BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76990.1
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476859 jgi|Araly1|476859|fgenesh2_kg.2__1989__AT1G76990.4 2451 0.0
> Ahg476859 jgi|Araly1|476859|fgenesh2_kg.2__1989__AT1G76990.4
Length=1862
Score = 2451 bits (1327), Expect = 0.0
Identities = 1477/1548 (95%), Gaps = 15/1548 (1%)
Strand=Plus/Plus
Query 99 cttcttcttcttctctgtctctgt-ctctgtctctctgtaatcttctgtgctctccacaa 157
|||||||||||||| ||||||| | ||||||||| ||||||| ||||| | || ||
Sbjct 61 CTTCTTCTTCTTCTGTGTCTCTCTGGTCTGTCTCTGTGTAATC-TCTGT--T-TCTTTAA 116
Query 158 atttgtctctcctc-tctctc--GCCGACTCCACAAATTTTGAGCTTCtttttttGAAGT 214
||| |||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||
Sbjct 117 ATTCGTCTCTCCTCTTCTCTCTTGCTGACTCCACAAAATTTGAGCTT-TTTTTTTGAAGT 175
Query 215 TCTTGAGAACAAGTGAAAGAGCTTAATATCCACAAGA--CTCTTGTTTCTTTCTTAAATG 272
||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 176 TCTTGAGAACAAGTG-AAGAGCTTAATATCCACAAGACTCTCTTGTTTCTTTGTTAAATG 234
Query 273 GCTAAAGTTTATTGGCCTTATTTCGATCCTGAATATGAGAACTTGAGCTCCAGAATCAAT 332
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 GCTAAAGTTTATTGGCCGTATTTCGATCCTGAATATGAGAACTTGAGCACCAGAATCAAT 294
Query 333 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 354
Query 393 AGTATGAACAAACCTGGAATACTACTTGAAGTTGTGCAAGTCCTAACCGATCTCGATCTC 452
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 355 AGTATGAACAAACCTGGAATACTGCTGGAAGTTGTGCAAGTCCTTACCGATCTCGATCTC 414
Query 453 ACTATCACTAAAGCTTATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 512
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACAATCACCAAAGCATATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 474
Query 513 ACCGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATCGATTACATCGAGAAGGTG 572
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 ACTGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATTGATTACATCGAGAAGGTT 534
Query 573 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACACTTGGCCTGGTAAAAGAGTCGGT 632
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 535 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACGCTTGGCCTGGTAAAAGGGTCGGT 594
Query 633 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 654
Query 693 TTGTCGGAGGTTTCAGCCGTACTAGCAGACCTCAACATTAATGTGGTGGCAGCTGAAGCA 752
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 655 TTGTCTGAGGTCTCAGCCGTACTAGCAGACCTCAACATCAATGTGGTGGCTGCTGAAGCA 714
Query 753 TGGACTCACAACCGTAGGATTGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 812
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGACTCACAACCGTAGGATCGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 774
Query 813 GCCGTTGATGATCCAGAAAGATTGTCTTCCATGGAAGAACAGCTTAACAATGTGCTGCGT 872
||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct 775 GCCGTTGATGACCCAGAAAGATTGTCTGCCATGGAAGAACAGCTCAACAACGTGCTGCGT 834
Query 873 GGGTGCGAAGAACAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCGACTCAC 932
||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 GGGTGTGAACAAGAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCAACTCAC 894
Query 933 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAGAGACTACGAAGCAGTGACTAAG 992
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 895 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAAAGACTATGAAGCAGTGACCAAG 954
Query 993 CTTGATGATTCTGCTTCTTGCGGATTCGAGCCCAAAATCACGGTTGAGCATTGTGAAGAG 1052
|||||||||| ||||||| | ||| |||||||||||||||||||||||||||| ||||||
Sbjct 955 CTTGATGATTTTGCTTCTCGTGGACTCGAGCCCAAAATCACGGTTGAGCATTGCGAAGAG 1014
Query 1053 AAAGGTTACTCCGTGATAAACGTGAGCTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1112
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1015 AAAGGTTACTCTGTGATAAACGTGAACTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1074
Query 1113 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1134
Query 1173 TCTCATGCTTCTCAGGAGTATTTCATCAGACACAAAGACGGTTGCACTCTTGACACAGAA 1232
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1135 TCTCATGCTTCTCAGGAGTATTTCATTAGACACAAAGACGGTTGCACTCTTGACAC---A 1191
Query 1233 GGAGAGAAAGAGAGAGTTGTCAAATGTCTGGAAGCTGCAATCCATAGACGAGTCAGCGAG 1292
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1192 GGAGAGAAAGAGAGAGTTATCAAATGTCTAGAAGCCGCAATCCATAGACGAGTCAGCGAG 1251
Query 1293 GGTTGGAGTTTGGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1352
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GGTTGGAGTTTAGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1311
Query 1353 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1371
Query 1413 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGATGTGAAGACGATT 1472
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1372 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGACGTGAAGACGATT 1431
Query 1473 GAGGCGTTACGCGGAGAGATTGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1532
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAGGCGTTACGCGGAGAGATCGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1491
Query 1533 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCAGT 1592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1492 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCACT 1551
Query 1593 TTCTTCTTTGGGAATTTGCTGGAGAAGTTACTGCCTTGAGAGAAAAGG 1640
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1552 TTCTTCTTTGGGAATTTGCTGGAGAAGTTGCTGCCTTGAGAGAAAAGG 1599
Score = 353 bits (191), Expect = 2e-96
Identities = 247/271 (91%), Gaps = 15/271 (6%)
Strand=Plus/Plus
Query 1722 AGGGATTTTGGTGGTTTGCCCG-AAGTCAAACCGAACCAAAACTGGTTTTCGGTTACTTT 1780
|||||||||||||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 1597 AGGGATTTTGGTGGTTTGCCCGAAACT-AAACCGAACCAAAACTGGTTTTCGG-----TT 1650
Query 1781 AGACTTTAGTCATAGTAAAATGAACATGTCTATAAATGAATAATATGCAACTCTTCCAAT 1840
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1651 --AC-TTAGTCATAGTAAAATGAACATGTCTATAAAAGAATAATATGCAACTCTTCCTAT 1707
Query 1841 TGGTAGGCTTGCTTTTGTCTATGTAATATCAATCCTTCTTGTTATGTATTTATCTTTGGC 1900
||| |||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct 1708 TGGAAGGCTTGCTTTTGTCTATGTAATATCGAT-C--CTTGTTATGTA-TTATCTTTGGC 1763
Query 1901 CAAATGTGATATTTTCTGTAGTTTTAATCTCTTCTTTTCCTTCTATTTTGTAACTTCTTC 1960
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1764 CAAATGTGATATTTTCTGTAGTTT-AATCTCTTCTTTCCCTTCTATTTTGTAACTTCTTT 1822
Query 1961 GAATCTTTAATGTCAATATCATTGCAGTGAG 1991
||||||| ||| |||||||||||||||||||
Sbjct 1823 GAATCTTGAATATCAATATCATTGCAGTGAG 1853
Score = 111 bits (60), Expect = 2e-23
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74847331425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5