BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77000.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476863 jgi|Araly1|476863|fgenesh2_kg.2__1993__AT1G77000.1 1845 0.0
Ahg472378 jgi|Araly1|472378|fgenesh2_kg.1__2332__AT1G21410.1 929 0.0
> Ahg476863 jgi|Araly1|476863|fgenesh2_kg.2__1993__AT1G77000.1
Length=1329
Score = 1845 bits (999), Expect = 0.0
Identities = 1244/1356 (92%), Gaps = 41/1356 (3%)
Strand=Plus/Plus
Query 1 AATCCTTATTTCCTTACATTTGTCGTCTTTTGATGTCATAGACTCAGAGATATTTAT-T- 58
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1 AATCCTTATTTCCCTACATTTGTCGTCTTTTGATGTCCTAAACTCAGAGATATTTATCTC 60
Query 59 T-ATCT-TCTTTCTCTCTCATTTCTCATTCTCATATTTACTTTTGATCTCGTGGTGTTAG 116
| || ||| |||||||| | |||||||||| |||||||||||||||| ||||||||||
Sbjct 61 TCCCCTCTCTCTCTCTCTC-TCTCTCATTCTCTTATTTACTTTTGATCTTGTGGTGTTAG 119
Query 117 AATCAAAGAAACCGCTTCAAGGATGGTGAGTGAAGGAGCAACAAGAAAAGAACTTAACCT 176
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AATCAAAGAAACCGCTT-AAAGATGGTGAGTGAAGGAGCAACAAGAAAGGAACTTAACCT 178
Query 177 CTGTTTCGAGAATATGAAGATGGAAGGAGTTTTGATCTCTGAGTGGAAAGATATCCCTGT 236
|| |||||||| |||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 179 ATGCTTCGAGAAGATGAAGATGGAAAGAATCGTGATCTCTGAGTGGAAAGATATCCCTGT 238
Query 237 GGAGCTTCTCATGAAGATTTTAAACCTTGTTGATGATCGGACTGTGATCATTGCTTCTTG 296
||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GGAGCTTCTTATGAGGATCCTAAACCTTGTTGATGATCGGACGGTGATCATTGCTTCTTG 298
Query 297 TATTTGTAGTGGCTGGAGAGATGCTGTTTCCCTTGGCCTCACTCGCCTCTCCCTCTCTTG 356
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 299 TATTTGTAGTGGTTGGAGAGATGCTATTTCCCTTGGCCTCACTCGTCTCTCCCTCTCTTG 358
Query 357 GTGCAAGAAGAATATGAACAGTTTGGTTCTATCTCTTGCTCCCAAATTCGTAAAGCTTCA 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 GTGCAAGAAGAATATGAACAGTTTGGTTCTTTCTCTTGCTCCCAAATTCGTAAAGCTTCA 418
Query 417 GACTTTAGTACTGCGACAGGACAAACCGCAGCTTGAGGACAACGCGGTGGAAGCCATAGC 476
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 GACTTTAGTACTGCGACAAGACAAACCGCAGCTTGAGGACAGCGCGGTGGAAGCCATAGC 478
Query 477 AAATCACTGTCATGAGCTACAAGATTTGGACTTAAGCAAAAGCTCGAAAATCACTGACCA 536
||||||||||||||||||||| |||||||| ||||||||||||| |||| | ||||||||
Sbjct 479 AAATCACTGTCATGAGCTACACGATTTGGATTTAAGCAAAAGCTTGAAACTTACTGACCA 538
Query 537 TTCCCTATATTCACTTGCTCGTGGTTGTACTAACCTGACTAAACTCAACCTTAGCGGCTG 596
|||||||||||| || |||||||||||||||||||| ||||| ||||||||||| | |||
Sbjct 539 TTCCCTATATTCTCTGGCTCGTGGTTGTACTAACCTCACTAAGCTCAACCTTAGTGCCTG 598
Query 597 CACTTCGTTCAGCGACACTGCTCTTGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAAT 656
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 CACTTCGTTCAGCGACACTGCTCTCGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAAT 658
Query 657 TCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGA 718
Query 717 AAACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGG 778
Query 777 AGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACTCTTGATCTTTGTAGCTGTGT 836
||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 779 AGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACCCTTGATCTTTGTGGTTGTGT 838
Query 837 TCTAATCACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGCATTCACTTGAGGTCATT 896
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 839 TCTAATTACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGTATACACTTGAGGTCATT 898
Query 897 GGGGTTATACTACTGCAGAAACATTACAGACAGAGCAATGTACTCTTTAGCTCAGAGCGG 956
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 899 GGGATTATACTACTGCAGAAACATTACCGACAGAGCGATGTACTCTTTAGCTCAGAGCGG 958
Query 957 AGTCAAGAACAAACACGAGATGTGGCGAGCGGTAAAGAAAGGAAAATTCGATGAAGAAGG 1016
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 AGTAAAGAACAAACACGAGATGTGGCGAGCGGTAAAGAAAGGCAAATTCGATGAAGAAGG 1018
Query 1017 ACTAAGAAGCCTTAACATTAGTCAATGCACTTACCTAACACCTTCAGCTGTTCAAGCTGT 1076
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1019 ACTAAGAAGCCTTAACATTAGCCAATGCACTTACCTAACACCTTCAGCGGTTCAAGCGGT 1078
Query 1077 CTGTGATACATTCCCTGCTCTCCACACTTGTTCAGGCAGACATTCACTTGTCATGAGCGG 1136
||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1079 CTGCGATACATTCCCTGCACTCCACACTTGCTCAGGCAGGCATTCACTTGTCATGAGCGG 1138
Query 1137 TTGTTTGAATCTACAATCTGTTCATTGTGCTTGTATCCTTCA-----A--G--CTCACCG 1187
|||| ||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1139 TTGTCTGAATCTACAATCTGTTCATTGTGCTTGTATCCTTCAGGCTCACCGGGCTCACCG 1198
Query 1188 CACTCACACCG-TTTACCCTCACCCGGCGCATTGAAACGGTGTGTGAGCCAGAGGGTCTA 1246
||| ||||||| ||| |||||||||||| ||||||| ||||||||| | | |
Sbjct 1199 CACCCACACCGCTTT-CCCTCACCCGGCTCATTGAACCGGTGTGTG-G--------T--A 1246
Query 1247 CTACTCTCTAGTATGTGTGTACATACATATAACCATATGGTGTTAATAAAGCTTCTTTGA 1306
| || |||| |||||||||||| | |||||| | |||||||||||||| |
Sbjct 1247 -T--------GT--GTGT--ACATACATATAAGCTTATGGTCTAAATAAAGCTTCTTTAA 1293
Query 1307 GTTCCTTCTTTGTCTTTGATGCAATCTTAAGATTTT 1342
||| |||||||||||||||| |||||| ||||||||
Sbjct 1294 GTTTCTTCTTTGTCTTTGATACAATCTCAAGATTTT 1329
> Ahg472378 jgi|Araly1|472378|fgenesh2_kg.1__2332__AT1G21410.1
Length=1318
Score = 929 bits (503), Expect = 0.0
Identities = 882/1063 (83%), Gaps = 34/1063 (3%)
Strand=Plus/Plus
Query 180 TTTCGAGAATATGAAGATGGAAGGAGTTTTGATCTCTGAGTGGAAAGATATCCCTGTGGA 239
|||| |||| ||||||||||||||| | | |||| ||||||| |||||||||||||||
Sbjct 81 TTTC-AGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGTGGAGAGATATCCCTGTGGA 139
Query 240 GCTTCTCATGAAGAT--TTTAAACCTTGTTGATGATCGGACTGTGATCATTGCTTCTTGT 297
|||||| |||| ||| ||| ||||||||||||||| | ||| || |||||||| ||
Sbjct 140 GCTTCTGATGAGGATCCTTT--CCCTTGTTGATGATCGTAATGTCATTGTTGCTTCTGGT 197
Query 298 ATTTG-TAGTGGCTGGAGAGATGCTGTTTCCCTTGGCCTCACTCGCCTCTCC--CTCTCT 354
|||| | ||||||||||||||||| | || ||||||||||||| ||||| ||||||
Sbjct 198 GTTTGCT-GTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTCG--TCTCCGTCTCTCT 254
Query 355 TGGTGCAAGAAG-AATATGAACAGTTTGGTTCTATCTCTTGCTCCCAAATTCGTAAAGCT 413
|||||||| || || |||||||| |||||||| ||||||| |||||| || || |||||
Sbjct 255 TGGTGCAA-CAGCAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCAAGTTTGTGAAGCT 313
Query 414 TCAGACTTTAGTACTGCGACAGGACAAACCGCAGCTTGAGGACAACGCGGTGGAAGCCAT 473
||||||||| ||||||| ||||||||||| || ||||||||||| || ||||| |||||
Sbjct 314 GCAGACTTTAATACTGCGGCAGGACAAACCACAACTTGAGGACAATGCAGTGGAGGCCAT 373
Query 474 AGCAAATCACTGTCATGAGCTACAAG-ATTTGGACT-TAAGCAAAAGCTCGAAAATCACT 531
|||||||||||| |||||| |||||| | || || | | |||||||||| |||||| ||
Sbjct 374 AGCAAATCACTGCCATGAGTTACAAGAACTT-GA-TCTCAGCAAAAGCTTGAAAATTACA 431
Query 532 GACCATTCCCTATATTCACTTGCTCGTGGTTGTACTAACCTGACTAAACTCAACCTTAGC 591
|| | ||| || ||| ||||||||| |||||| || |||| || ||||||||||||||
Sbjct 432 GATCGTTCACTTTATGCACTTGCTCATGGTTGCCCTGACCTCACAAAACTCAACCTTAGT 491
Query 592 GGCTGCACTTCGTTCAGCGACACTGCTCTTGCGCATTTGACAAGATTTTGCAGGAAGCTC 651
||||||||||| ||||| ||||||||| ||||| ||||||| ||||| ||||| |||||
Sbjct 492 GGCTGCACTTCATTCAGTGACACTGCTATTGCGTATTTGACCAGATTCTGCAGAAAGCTT 551
Query 652 AAAATTCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCA-G-G-CT 708
||| || |||||||||| || ||||| |||||||| |||||||| | ||| | | | |
Sbjct 552 AAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCCTTGGAGGTGAAT 611
Query 709 ATTGGAGAA-AACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAG 767
||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 612 ATTGG-GAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGTGAGAATATCAG 670
Query 768 TGATGATGGAGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACTCTTGATCTTTG 827
||||||||| || |||| |||||||||||| ||||| ||| | || || ||||| || ||
Sbjct 671 TGATGATGGGGTAATGAATTTAGCTTATGGCTGTCCAGATCTCAGGACCCTTGACCTCTG 730
Query 828 TAGCTGTGTTCTAATCACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGCATTCACTT 887
| ||||||||||||| |||||||||||||| || ||| | ||| || |||| | |||||
Sbjct 731 TGGCTGTGTTCTAATTACAGATGAGAGTGTGGTAGCTCTAGCGGATTGGTGTGTCCACTT 790
Query 888 GAGGTCATTGGGGTTATACTACTGCAGAAACATTACAGACAGAGCAATGTACTCTTTAGC 947
||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 791 GAGGTCACTGGGGTTATACTATTGCAGAAACATAACAGACAGGGCAATGTACTCGTTAGC 850
Query 948 TCAGAGCGGAGTCAAGAACAAACACGAGATG-TGGCGAGCGGTAAAGAAAGGAAAATTCG 1006
||| ||||| || |||||||||| || | | ||| | | ||||||||||| |||| ||
Sbjct 851 TCAAAGCGGGGTAAAGAACAAAC-CGGGTTCATGGAAATCAGTAAAGAAAGGCAAATACG 909
Query 1007 ATGAAGAAGGACTAAGAAGCCTTAACATTAGTCAATGCACTTACCTAACACCTTCAGCTG 1066
||||||||||||| ||||| || |||||||| ||||||||| ||| ||||||||||| |
Sbjct 910 ATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTCACACCTTCAGCGG 969
Query 1067 TTCAAGCTGTCTGTGATACATT-CCCTGCTCTCCACACTTGTTCAGGCAGACATTCACTT 1125
|||||||||| || ||| | || ||| || || ||||| |||||||| || ||||| |||
Sbjct 970 TTCAAGCTGTTTGCGATTCCTTTCCC-GCGCTTCACACATGTTCAGGAAGGCATTCGCTT 1028
Query 1126 GTCATGAGCGGTTGTTTGAATCT-A-CAATCTGTTCATTGTGCTTGTATCCTTCAAGCTC 1183
||||||||||||||| |||| || | ||| |||| || ||||||||||||||||| ||||
Sbjct 1029 GTCATGAGCGGTTGTCTGAA-CTTAACAA-CTGTCCACTGTGCTTGTATCCTTCAGGCTC 1086
Query 1184 ACCGCACTCACAC--CGTTTACCCTCACCCGGCGCATTGAAAC 1224
| || | |||| || || || ||| ||||| |||||||||
Sbjct 1087 ATCGTGCGCACAATGCGGTT-CC-TCATCCGGCTCATTGAAAC 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5