BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77020.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927099 jgi|Araly1|927099|scaffold_202660.1 1953 0.0
> Ahg927099 jgi|Araly1|927099|scaffold_202660.1
Length=1180
Score = 1953 bits (1057), Expect = 0.0
Identities = 1134/1172 (97%), Gaps = 1/1172 (0%)
Strand=Plus/Plus
Query 149 ACATCTTTG-TCTGATCATGGTGAAGGAAACAGTGTATTATGATGTTCTTGGTGTCACTC 207
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 4 ACATTTTTGATCTGATCATGGTGAAGGAAACAGTGTACTATGATGTTCTTGGTGTCACTC 63
Query 208 CCTCTGCTTCTGAGGAAGAGATTCGCAAGGCTTATTACATCAAGGCAAGACAAGTTCATC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CCTCTGCTTCTGAGGAAGAGATTCGCAAGGCTTATTACATCAAGGCAAGACAAGTTCATC 123
Query 268 CTGACAAGAATCAAGGTGATCCTCTAGCTGCTGAAAAGTTTCAGGTTCTTGGTGAAGCTT 327
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTGATAAGAATCAAGGTGATCCTCTAGCTGCTGAAAAGTTTCAGGTTCTTGGTGAAGCTT 183
Query 328 ACCAGGTTCTAAGTGATCCTGTTCATCGTGAAGCGTATGATCGGACTGGAAAATTCTCAG 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ACCAGGTTCTAAGTGATCCTGTTCATCGTGAAGCGTATGATCGGACTGGAAAATTCTCAG 243
Query 388 CTCCCAAAGAAACAATGGTTGATCCAACGGCTGTTTTCGCTCTTCTTTTCGGAAGTGAAC 447
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CTCCCAAAGAAACGATGGTTGATCCAACGGCTGTTTTCGCTCTTCTTTTCGGAAGTGAAC 303
Query 448 TATTCGAGGATTATATCGGTCACTTGGCTGTTGCATCAATGGCTTCCACTCAAATGGCTT 507
||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 304 TATTCAAAGATTATATCGGTCACTTAGCTGTTGCATCAATGGCGTCCACTCAAATGGCTT 363
Query 508 CTGAAATCGAAAACTCTGATCAGTTTCAAGACAAACTAAAGGCTGTTCAGAAAGAAAGAG 567
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTGAAATCGAAACCCCTGATCAGTTTCAAGACAAACTAAAGGCTGTTCAGAAAGAAAGAG 423
Query 568 AAGAAAACCTTTCAAGGTTTCTCAAAGATTTTCTGAGTCAATATGTCCACGGAGACAAAG 627
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 424 AAGAAAACCTCGCAAGGTTTCTCAAAGATTTTCTTAGTCAATATGTCCATGGAGACAAAG 483
Query 628 AAGGATTCATAAGCCGCGCAGAATCTGAAGCCAAGAGACTTTCAGATGCAGCTTTTGGAG 687
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 484 AAGGATTCATAAGCCGCGCAAAATCTGAAGCCAAGAGACTATCAGATGCAGCTTTTGGAG 543
Query 688 CGGATATGTTGCATACAATTGGATATGTATACACAAGACAAGCAGCTCAAGAACTTGGGA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CGGATATGTTGCATACAATTGGATATGTATACACAAGACAAGCAGCTCAAGAACTTGGGA 603
Query 748 AGAGAGCTCTTTACTTAGGAGTTCCATTTGTAGCTGAATGGGTTAGGAACAAAGGTCATT 807
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AAAGAGCTCTTTACTTAGGAGTTCCATTTGTAGCTGAATGGGTTAGGAACAAAGGTCATT 663
Query 808 CTTGGAAATCACAGATTAGTGCAGCTAAAGGAGCTTTACAGTTACTTCAGCTGCAAGAAG 867
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 664 CTTGGAAGTCACAGATTAGTGCAGCCAAAGGAGCTTTTCAGTTACTTCAGCTGCAAGAAG 723
Query 868 AGAGTAACCGGAGATTAAAGAAAGATGGGACTAGTCCAGCAAATGAGTTAGAGTCTCATA 927
||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 724 AGAGTAACCGGAGATTAAAGAAAGATGGGGCTAGTCCAGCGAATGAGCTAGAGTCTCATA 783
Query 928 TTCAGACCAACAAAGAAACATTGATGGGATCTTTGTGGAAACTTAATGTTGTCGACATTG 987
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTCAGACCAACAAAGAAACACTGATGGGATCTTTGTGGAAACTTAATGTTGTCGACATTG 843
Query 988 AAGTGACTCTGTTACATGTGTGTCAGATGGTCTTTCGCGAAAACAATTTGAGAAAGGAGG 1047
|||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||||| |
Sbjct 844 AAGTGACTTTGTTACATGTGTGTCAGATGATCTTGCGCGAAAACAACTTGAGAAAGGATG 903
Query 1048 AGCTCAAGTCTAGAGCAATGGCTCTCAAGATTCTTGGGAAGATTTTTCAGCAAGAAAAGC 1107
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 904 AGCTCAAATCTAGAGCAATGGCTCTCAAGATTCTTGGGAAGATTTTCCAGCAAGAAAAGC 963
Query 1108 AATCGAAGAACGGTACAACATCAAGAAAAGAAGATGAAGACAGCGACGATGATGACAGTA 1167
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AATCGAGGAACGGTACAACATCAAGAAAAGAAGATGAAGACAGCGACGATGATGACAGTA 1023
Query 1168 GCAGCGATGACGATTCTTCACAACCACTTTCATACAGAACTCCTCTGCTTACTCAGGGGA 1227
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1024 GTAGTGATGACGATTCTTCACAACCACTTTCATACAGAACTCCTCTGCTCACTCAGGGGA 1083
Query 1228 TTGGTAGACTTTTCAGATGTCTCTGCAATCCAGCATTCGATGTAGACGATGATGAAATTG 1287
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1084 TTGGTAGACTCTTCAGATGTCTCTGCAATCCAGCATTTGATGTAGACGATGATGAAATTG 1143
Query 1288 TATACAAAGGCAAATGATCAATACCACACTCA 1319
||||||||||||||||||||||||||||||||
Sbjct 1144 TATACAAAGGCAAATGATCAATACCACACTCA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5