BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77060.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1 1668 0.0
Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1 817 0.0
> Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1
Length=1101
Score = 1668 bits (903), Expect = 0.0
Identities = 1038/1104 (94%), Gaps = 6/1104 (1%)
Strand=Plus/Plus
Query 3 GTGGGTCAGAGTCTAACTCGA-TTAGAGAGAAGAA-AAAACTTGTTCGAGGCTTCGAAGA 60
||||||||||||| ||||||| |||||||| |||| || |||| ||| | |||||||| |
Sbjct 1 GTGGGTCAGAGTCCAACTCGATTTAGAGAG-AGAACAAGACTTATTC-AAGCTTCGAACA 58
Query 61 ATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTTAAACCTTACA 120
|||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||
Sbjct 59 ATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAGCAGCTTAAACCTGACG 118
Query 121 GCTTCACCAACATTCCGACGGAACCCACGCGCGGCGAGATTGGTGAATCCGACAGCGAGA 180
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 119 GCTTCACCAACATTCCGACGGAACCCACGAGCGGCGAGATTGATGAATCCGACGGCGAGA 178
Query 181 ATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTATGCCTGGATGC 240
|||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 179 ATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCATTGTTCTCATGCCTGGATGC 238
Query 241 TACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 300
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 298
Query 301 GGTTACGCCTTATCCGCTTCTCTCCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTTACGCCTTATCCGCTTCTCTTCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 358
Query 361 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCTAATATACCCATCATTGCA 420
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 359 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCAAATATACCAATCATTGCA 418
Query 421 GATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACCGTAAAGGATTTGATT 480
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 419 GATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTCAAAGAACCGTAAAGGATTTGATT 478
Query 481 GCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 538
Query 541 ATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAAATAGCATCAGCTC-G 599
|||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | |
Sbjct 539 ATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATGCCACTAAAATAGCATCAGC-CAG 597
Query 600 AGATGCTATTGGAGACTCTGACTTCTTCCTTGTCGCAAGAACAGACGTGCGTGCTACTTC 659
||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 598 AGACGCTATCGGAGACTCTGACTTCTTCCTTGTTGCAAGAACAGATGTGCGTGCTACTTC 657
Query 660 TGCAAAATCAGGGCTTGAAGACGCCATTGCACGTGTTAATCTATACATGGAGGCAGGAGC 719
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 658 TGCAAAATCAGGTCTTGAAGACGCCATTGCGCGTGTTAATCTCTACATGGAGGCGGGAGC 717
Query 720 TGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 779
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 TGATGCATCATTTGTAGAGGCACCGAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 777
Query 780 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTACACACGCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTGCACACGCC 837
Query 840 TGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCACCCCCTTACCGCACTCTATGC 899
|| |||||||||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 838 TGTTGAGCTTAAAGAAATGGGGTTTCACTTGATCGTTCACCCGCTTACCGCACTCTATGC 897
Query 900 ATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAAGAAAACGGTAGCACTCGAGA 959
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 ATCGACTCGAGCTCTGGTTGATGTTCTCAAGACTCTTAAAGAAAACGGAAGCACTCGAGA 957
Query 960 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTGGTGGATTTAGATTCGTG 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 958 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTAGTGGATTTAGATTCATG 1017
Query 1020 GTTTGAGCTTGAAGCTCGCTATTCAAACCTCAGAAACGCTCTTGGGACAACCAAATCATG 1079
||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 1018 GTTTGAGCTCGAAGCTCGCTATTCAAACCTCAGGAACGCTCTTAGGACAACAAAATCATG 1077
Query 1080 AAGATAGGGACAtttttttttttt 1103
||||||| ||| ||||||||||
Sbjct 1078 AAGATAGACACAACTTTTTTTTTT 1101
> Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1
Length=1197
Score = 817 bits (442), Expect = 0.0
Identities = 853/1049 (81%), Gaps = 38/1049 (4%)
Strand=Plus/Plus
Query 51 GCTTCGAAGAATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTT 110
|||||||| |||||||||||||||||| | |||| | ||||||||| || | ||||
Sbjct 38 GCTTCGAA-AATGTCGATGTTAATGGCGGCCAAATCCACTTCACTC--TT-T---AGCTC 90
Query 111 AAACCTTACAGCTTCACCAACATTCCGACGGAACCCACGCGC-GGCGAGATTGGTGAATC 169
||||| ||| |||| | | | || | | ||||| ||||| | | |||| ||| |||
Sbjct 91 AAACCCAACAATTTCAGCTAGAATCGGGCAAAACCCTCGCGCTGTC-AGATCGGTTTATC 149
Query 170 CGACAGCGAGAATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTA 229
|||| | |||||| || ||||| |||| || ||||| ||||| |||||| ||||||||
Sbjct 150 CGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATCGAAGAGCAAGGCGCTGTGCTTA 209
Query 230 TGCCTGGATG-CTACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCT 288
| || ||| | |||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 210 TTCCCGGA-GTCTACGACGCATTATCGGCGGCTATTGTGCAGCAGACCGGATTCTCCGCC 268
Query 289 GGTTTTATATCCGGTTACGCCT-TATCCG-CTTCTCTCCTGGGAAAACCCGATTTCGGTT 346
| || || |||||||||| || | |||| | | || |||||||||||||||||||||
Sbjct 269 GCATTAATCTCCGGTTACG-CTGTCTCCGCCGTAACT-TTGGGAAAACCCGATTTCGGTT 326
Query 347 TGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGT-CAGCTCCTAAT 405
|| ||||||| ||||||||||| || ||||| || || |||||||| | | ||||| ||
Sbjct 327 TGATAACACCGCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGC-TGCTGCTCCAAAG 385
Query 406 ATACCCATCATTGCAGATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACC 465
|| || |||||||| ||||| ||||| |||||||||||||| || || |||||||||||
Sbjct 386 ATTCCAATCATTGCCGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTCAAAGAACC 445
Query 466 GTAAAGGATTTGATTGCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCA 525
|| ||||| || || ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 446 GTTAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGGCATGGCCA 505
Query 526 AAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAA 585
|||| |||||| ||||||||||| ||| |||| ||||| || || || || || || |||
Sbjct 506 AAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAGCACGCTGCTAAA 565
Query 586 ATAGCATCAGCTCGAGATGCTATTGGAGACT-CTGACTTCTTCCTTGTCGCAAGAACAGA 644
|||||||| || |||| ||||||||||| | ||||||| ||||| |||| || || ||
Sbjct 566 ATAGCATCGGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTCCTAATCGCTAGGACTGA 624
Query 645 CG-TGCGTGCTAC-TTCTGCAAAATCAGGGCTTGAAGACGCCATTGCA-CGTGTTAATCT 701
| | ||||| || ||| |||||| |||| ||| ||||||||||| | |||| ||||||
Sbjct 625 TGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTG-ACCGTGCTAATCT 681
Query 702 ATACATGGAGGCAGGAGCTGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCT 761
|||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||
Sbjct 682 TTACATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGATGATGAGCT 741
Query 762 CAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTT-TGCAACATGATTGAAGGAGGA- 819
|||||||| |||| ||||||||||| || ||| || || |||||| ||||||| |||
Sbjct 742 TAAGGAAATCGGAAGGCGCACAAAAGGCTACAGA-TTGTGTAACATGCTTGAAGGTGGAC 800
Query 820 GTCACACCATTACACACGCCTGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCAC 879
| ||| ||||| || |||||||||||||||||||||||||| || || ||||| | |||
Sbjct 801 G-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGCTTTCATTTGATCGCACAC 859
Query 880 CCCCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAA 939
|| |||||| | || ||||||||||| |||||||| || ||||| ||||||| ||| ||
Sbjct 860 CCACTTACCTCGCTTTATGCATCGACCCGAGCTCTTGTGGATGTACTCAAGATTCTCAAG 919
Query 940 GAAAACGGTAGCACTCGA-GATCACTT-GCAAAAGATGGCTACTTTTGAGGAATTCAATA 997
||||| || | ||| | | |||||||| | |||||||| |||||| ||||| || || |
Sbjct 920 GAAAAGGGAACCAC-CAAAGATCACTTAG-AAAAGATGATTACTTTCGAGGAGTTTAACA 977
Query 998 GTTTGGTGGATTTAGATTCGTGGTTTGAGCTTGAAGCTC-GCTATTCAAACCTCAGAAAC 1056
|||||||||| || ||||| |||| |||||||||| || | || || ||||||||||||
Sbjct 978 GTTTGGTGGACTTGGATTCATGGTATGAGCTTGAAACTAAG-TACTCTAACCTCAGAAAC 1036
Query 1057 GCTCTTGGGACAACCAAA-TCATGAAGAT 1084
|| ||||||||||| ||| | |||| |||
Sbjct 1037 GCGCTTGGGACAAC-AAAGTGATGA-GAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5