BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77060.1 Length=1199 Score E Sequences producing significant alignments: (Bits) Value Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1 1668 0.0 Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1 817 0.0 > Ahg476868 jgi|Araly1|476868|fgenesh2_kg.2__1998__AT1G77060.1 Length=1101 Score = 1668 bits (903), Expect = 0.0 Identities = 1038/1104 (94%), Gaps = 6/1104 (1%) Strand=Plus/Plus Query 3 GTGGGTCAGAGTCTAACTCGA-TTAGAGAGAAGAA-AAAACTTGTTCGAGGCTTCGAAGA 60 ||||||||||||| ||||||| |||||||| |||| || |||| ||| | |||||||| | Sbjct 1 GTGGGTCAGAGTCCAACTCGATTTAGAGAG-AGAACAAGACTTATTC-AAGCTTCGAACA 58 Query 61 ATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTTAAACCTTACA 120 |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| || Sbjct 59 ATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAGCAGCTTAAACCTGACG 118 Query 121 GCTTCACCAACATTCCGACGGAACCCACGCGCGGCGAGATTGGTGAATCCGACAGCGAGA 180 ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| Sbjct 119 GCTTCACCAACATTCCGACGGAACCCACGAGCGGCGAGATTGATGAATCCGACGGCGAGA 178 Query 181 ATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTATGCCTGGATGC 240 |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 179 ATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCATTGTTCTCATGCCTGGATGC 238 Query 241 TACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 300 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 298 Query 301 GGTTACGCCTTATCCGCTTCTCTCCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 360 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 299 GGTTACGCCTTATCCGCTTCTCTTCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 358 Query 361 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCTAATATACCCATCATTGCA 420 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 359 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCAAATATACCAATCATTGCA 418 Query 421 GATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACCGTAAAGGATTTGATT 480 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 419 GATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTCAAAGAACCGTAAAGGATTTGATT 478 Query 481 GCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 538 Query 541 ATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAAATAGCATCAGCTC-G 599 |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | | Sbjct 539 ATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATGCCACTAAAATAGCATCAGC-CAG 597 Query 600 AGATGCTATTGGAGACTCTGACTTCTTCCTTGTCGCAAGAACAGACGTGCGTGCTACTTC 659 ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 598 AGACGCTATCGGAGACTCTGACTTCTTCCTTGTTGCAAGAACAGATGTGCGTGCTACTTC 657 Query 660 TGCAAAATCAGGGCTTGAAGACGCCATTGCACGTGTTAATCTATACATGGAGGCAGGAGC 719 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 658 TGCAAAATCAGGTCTTGAAGACGCCATTGCGCGTGTTAATCTCTACATGGAGGCGGGAGC 717 Query 720 TGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 779 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 718 TGATGCATCATTTGTAGAGGCACCGAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 777 Query 780 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTACACACGCC 839 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 778 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTGCACACGCC 837 Query 840 TGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCACCCCCTTACCGCACTCTATGC 899 || |||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 838 TGTTGAGCTTAAAGAAATGGGGTTTCACTTGATCGTTCACCCGCTTACCGCACTCTATGC 897 Query 900 ATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAAGAAAACGGTAGCACTCGAGA 959 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 898 ATCGACTCGAGCTCTGGTTGATGTTCTCAAGACTCTTAAAGAAAACGGAAGCACTCGAGA 957 Query 960 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTGGTGGATTTAGATTCGTG 1019 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 958 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTAGTGGATTTAGATTCATG 1017 Query 1020 GTTTGAGCTTGAAGCTCGCTATTCAAACCTCAGAAACGCTCTTGGGACAACCAAATCATG 1079 ||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1018 GTTTGAGCTCGAAGCTCGCTATTCAAACCTCAGGAACGCTCTTAGGACAACAAAATCATG 1077 Query 1080 AAGATAGGGACAtttttttttttt 1103 ||||||| ||| |||||||||| Sbjct 1078 AAGATAGACACAACTTTTTTTTTT 1101 > Ahg472380 jgi|Araly1|472380|fgenesh2_kg.1__2334__AT1G21440.1 Length=1197 Score = 817 bits (442), Expect = 0.0 Identities = 853/1049 (81%), Gaps = 38/1049 (4%) Strand=Plus/Plus Query 51 GCTTCGAAGAATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTT 110 |||||||| |||||||||||||||||| | |||| | ||||||||| || | |||| Sbjct 38 GCTTCGAA-AATGTCGATGTTAATGGCGGCCAAATCCACTTCACTC--TT-T---AGCTC 90 Query 111 AAACCTTACAGCTTCACCAACATTCCGACGGAACCCACGCGC-GGCGAGATTGGTGAATC 169 ||||| ||| |||| | | | || | | ||||| ||||| | | |||| ||| ||| Sbjct 91 AAACCCAACAATTTCAGCTAGAATCGGGCAAAACCCTCGCGCTGTC-AGATCGGTTTATC 149 Query 170 CGACAGCGAGAATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTA 229 |||| | |||||| || ||||| |||| || ||||| ||||| |||||| |||||||| Sbjct 150 CGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATCGAAGAGCAAGGCGCTGTGCTTA 209 Query 230 TGCCTGGATG-CTACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCT 288 | || ||| | |||||| || ||||| ||||||||||||||||| |||||||||||||| Sbjct 210 TTCCCGGA-GTCTACGACGCATTATCGGCGGCTATTGTGCAGCAGACCGGATTCTCCGCC 268 Query 289 GGTTTTATATCCGGTTACGCCT-TATCCG-CTTCTCTCCTGGGAAAACCCGATTTCGGTT 346 | || || |||||||||| || | |||| | | || ||||||||||||||||||||| Sbjct 269 GCATTAATCTCCGGTTACG-CTGTCTCCGCCGTAACT-TTGGGAAAACCCGATTTCGGTT 326 Query 347 TGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGT-CAGCTCCTAAT 405 || ||||||| ||||||||||| || ||||| || || |||||||| | | ||||| || Sbjct 327 TGATAACACCGCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGC-TGCTGCTCCAAAG 385 Query 406 ATACCCATCATTGCAGATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACC 465 || || |||||||| ||||| ||||| |||||||||||||| || || ||||||||||| Sbjct 386 ATTCCAATCATTGCCGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTCAAAGAACC 445 Query 466 GTAAAGGATTTGATTGCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCA 525 || ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 446 GTTAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGGCATGGCCA 505 Query 526 AAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAA 585 |||| |||||| ||||||||||| ||| |||| ||||| || || || || || || ||| Sbjct 506 AAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAGCACGCTGCTAAA 565 Query 586 ATAGCATCAGCTCGAGATGCTATTGGAGACT-CTGACTTCTTCCTTGTCGCAAGAACAGA 644 |||||||| || |||| ||||||||||| | ||||||| ||||| |||| || || || Sbjct 566 ATAGCATCGGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTCCTAATCGCTAGGACTGA 624 Query 645 CG-TGCGTGCTAC-TTCTGCAAAATCAGGGCTTGAAGACGCCATTGCA-CGTGTTAATCT 701 | | ||||| || ||| |||||| |||| ||| ||||||||||| | |||| |||||| Sbjct 625 TGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTG-ACCGTGCTAATCT 681 Query 702 ATACATGGAGGCAGGAGCTGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCT 761 |||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| Sbjct 682 TTACATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGATGATGAGCT 741 Query 762 CAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTT-TGCAACATGATTGAAGGAGGA- 819 |||||||| |||| ||||||||||| || ||| || || |||||| ||||||| ||| Sbjct 742 TAAGGAAATCGGAAGGCGCACAAAAGGCTACAGA-TTGTGTAACATGCTTGAAGGTGGAC 800 Query 820 GTCACACCATTACACACGCCTGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCAC 879 | ||| ||||| || |||||||||||||||||||||||||| || || ||||| | ||| Sbjct 801 G-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGCTTTCATTTGATCGCACAC 859 Query 880 CCCCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAA 939 || |||||| | || ||||||||||| |||||||| || ||||| ||||||| ||| || Sbjct 860 CCACTTACCTCGCTTTATGCATCGACCCGAGCTCTTGTGGATGTACTCAAGATTCTCAAG 919 Query 940 GAAAACGGTAGCACTCGA-GATCACTT-GCAAAAGATGGCTACTTTTGAGGAATTCAATA 997 ||||| || | ||| | | |||||||| | |||||||| |||||| ||||| || || | Sbjct 920 GAAAAGGGAACCAC-CAAAGATCACTTAG-AAAAGATGATTACTTTCGAGGAGTTTAACA 977 Query 998 GTTTGGTGGATTTAGATTCGTGGTTTGAGCTTGAAGCTC-GCTATTCAAACCTCAGAAAC 1056 |||||||||| || ||||| |||| |||||||||| || | || || |||||||||||| Sbjct 978 GTTTGGTGGACTTGGATTCATGGTATGAGCTTGAAACTAAG-TACTCTAACCTCAGAAAC 1036 Query 1057 GCTCTTGGGACAACCAAA-TCATGAAGAT 1084 || ||||||||||| ||| | |||| ||| Sbjct 1037 GCGCTTGGGACAAC-AAAGTGATGA-GAT 1063 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44756304558 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5