BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77080.4
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 1127 0.0
Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 791 0.0
Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 706 0.0
> Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2
Length=848
Score = 1127 bits (610), Expect = 0.0
Identities = 787/868 (91%), Gaps = 29/868 (3%)
Strand=Plus/Plus
Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGA-TTGAAGCCATGGGAAGAAGAAAAATC 59
Query 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 119
Query 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 179
Query 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240
||||| |||||||||||||||||||| || ||||||||||||||||| | | ||| |
Sbjct 180 GTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--TAGAAG--C 235
Query 241 ATTGATC--GTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAA 298
|| || | || || ||| | | ||| || || ||| ||||||| |||||
Sbjct 236 GCTGGTCAAG-CCGGAGAT--AAC-T-C-AATG--TTTTGA-ACTT-GATCTTGCAGAAA 285
Query 299 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAG 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345
Query 359 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405
Query 419 CTGCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATATCGA-GTCC 477
||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||
Sbjct 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGT-GAAGTCC 464
Query 478 CTTAAA-GAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 536
||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 523
Query 537 AAAGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAGTAGCTCCGG 596
||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||
Sbjct 524 GAAGAATACGTTGCTGGCAATAGAGGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583
Query 597 CAACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCT-GAGT 655
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643
Query 656 TTTC-ACCTTAAACTCAAAGCCTGATTCATAATTAAGAGAATAAATTTGTATATT-ATAA 713
|||| | ||||||||||| |||||||||| ||| |||| || | ||||||| ||| ||||
Sbjct 644 TTTCCAGCTTAAACTCAACGCCTGATTCAGAATGAAGAAAACATATTTGTAAATTTATAA 703
Query 714 AAAGCTGTGTAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTTAAGGTCAAAAAGA 773
|||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 704 AAAGCTGTATAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTAAAGGTTAAAAA-A 762
Query 774 AAACGAGAAAGTATGGATCAGT-GTTGTACCT-CCTTCGGAGACAAGATCAGAGTTTGTG 831
||| |||||||||||| || ||||||||| ||||| |||||||||||||||| ||
Sbjct 763 CT-CGATAAAGTATGGATC-GTTGTTGTACCTTCCTTCAAAGACAAGATCAGAGTTCATG 820
Query 832 TGTTTGTGTCTGAATGTACGGATTGGAT 859
||||||||| ||||||||||||||||||
Sbjct 821 TGTTTGTGTTTGAATGTACGGATTGGAT 848
> Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3
Length=767
Score = 791 bits (428), Expect = 0.0
Identities = 593/672 (88%), Gaps = 13/672 (2%)
Strand=Plus/Plus
Query 7 AAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATCGAGATC 66
|||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 100 AAATTAGGGCATAAGCCTTATCGGAGA-AAGAAGCCATGGGAAGAAGAAAGGTCGAGATC 158
Query 67 AAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTC 126
||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 159 AAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTC 218
Query 127 ATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCGTCGTA 186
||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| ||| |||
Sbjct 219 ATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTC 278
Query 187 TCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATCATTGAT 246
|||| ||| ||||||||||| || || ||||||||||| |||| || ||||||||||||
Sbjct 279 TCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGATCATTGAT 338
Query 247 CGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAAATTCAG 306
|||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct 339 CGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAAAAATTCGG 398
Query 307 AATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAACCAAAT 366
||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 399 AATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAAT 458
Query 367 GTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACTGCTCTG 426
||||||| ||||||||||||||||||||||||| |||||||||| || |||||| |||||
Sbjct 459 GTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTG 518
Query 427 TCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCCTTAAAG 484
||||||| |||||||| |||| ||||||| ||||||||| | | | || ||||||| |||
Sbjct 519 TCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGT-GAAGTCCCTTCAAG 576
Query 485 AAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGA-----T-GGGAA 538
||| ||||| ||||||||||||||||||||| ||||||||||||| | | ||| |
Sbjct 577 AAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAGTTGGGGA 636
Query 539 AGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAG-TAGCTCCGGC 597
|||||||||| |||| |||||| | ||||||| |||||| | ||||| | ||||||||
Sbjct 637 AGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCAC-GGGAAAATGGCTCCGGC 695
Query 598 AACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCTGAGTTT 657
|||||| |||| |||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 696 AACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTT 755
Query 658 TCACCTTAAACT 669
||||||||||||
Sbjct 756 TCACCTTAAACT 767
> Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2
Length=704
Score = 706 bits (382), Expect = 0.0
Identities = 483/532 (91%), Gaps = 5/532 (1%)
Strand=Plus/Plus
Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60
||||| |||||||||||| | ||||||||| || | |||||||||||||||||||| ||
Sbjct 66 AGGATCAAATTAGGGCATTATCCTTATCGGTGAAAT-AAGCCATGGGAAGAAGAAAAGTC 124
Query 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAA 184
Query 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180
||||||||||| ||||||||||||||||| |||||||| ||||| ||| |||||||| ||
Sbjct 185 GGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGTTCTC 244
Query 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240
||||| || | ||||||||||||||| || || | ||||||||| |||| || ||||||
Sbjct 245 GTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAAAGATC 304
Query 241 ATTGATCGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAA 300
|||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 305 ATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAAAA 364
Query 301 ATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAA 360
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 365 ATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAA 424
Query 361 CCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACT 420
||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 425 CCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACT 484
Query 421 GCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCC 478
||||||||||||| |||||||| |||| ||||||| ||||||||| | | | || |||||
Sbjct 485 GCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGT-GAAGTCCC 542
Query 479 TTAAAGAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCA 530
|| |||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 543 TTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5