BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77090.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927108 jgi|Araly1|927108|scaffold_202669.1 1031 0.0
> Ahg927108 jgi|Araly1|927108|scaffold_202669.1
Length=821
Score = 1031 bits (558), Expect = 0.0
Identities = 637/675 (94%), Gaps = 5/675 (1%)
Strand=Plus/Plus
Query 161 AGACGAGTGGTGTGCTAGGGTTTTGAGTAGAAGATCGGTAATGGCGTCAGGGTTGGTC-- 218
||||||| |||| |||| || ||||||||||||||||||| ||||||| || || ||
Sbjct 122 AGACGAGAGGTGCGCTACGGCTTTGAGTAGAAGATCGGTACTGGCGTCTGGATT-CTCTT 180
Query 219 T--CCTCGACGACGGCTTTAGCATTTCCAAGGGAAGGATTGGCTGTCGTTAAACAAGGTC 276
| |||| ||||| ||||| |||||| ||||||||||||||||||| ||||| ||||
Sbjct 181 TAGTCTCGTCGACGTCTTTAATGTTTCCAGGGGAAGGATTGGCTGTCGTGAAACAGGGTC 240
Query 277 TTCTCGCTGGGAGAGTTCCTGGTCTGTCCGAACCTGATGAAGAAGGTTGGAGAACATACC 336
|||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 241 TTCTTGCCGGGAGAGTTCCTGGTCTATCCGAACCTGATGATGAAGGTTGGAGAACATACC 300
Query 337 GTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACG 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACG 360
Query 397 CCTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCGATCGCTGATCTTGGTGGCA 456
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CCTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCCATCGCTGATCTTGGTGGCA 420
Query 457 CCGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTC 516
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGAGATTGACTTGCGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTC 480
Query 517 CTGTTCTTAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACAAC 576
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CTGTTCTAAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACCAC 540
Query 577 CAGCGAAGGTGATTAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTAGAAGGGAAGG 636
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 CAGCGAAGGTGATCAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTTGAAGGGAAGG 600
Query 637 TGTTAAGTTCCAATGTTGCAGAACACGATGGTAGACTCTATTACCAATTCGAGCTAGAGC 696
||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 601 TGTTAAGTTCCAATGTTTCAGAACACGAAGGTAGACTCTATTACCAATTTGAGCTAGAGC 660
Query 697 CGCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCA 756
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CACCTCATGTACTGATCACAGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCA 720
Query 757 CCGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT 780
Query 817 TCCGCATTGTTTAGA 831
|||||||||||||||
Sbjct 781 TCCGCATTGTTTAGA 795
Score = 84.2 bits (45), Expect = 2e-15
Identities = 60/67 (90%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 28 TTCTCGAACTTCGCCGGAGAATGATGGAAACAGCTCTGCTCCGGTACTGCGTCAACTTTT 87
|||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 2 TTCTCGAA-GTCGCCGGACAAACATGGAAACAGCTCTGCTCCGGTACTGCGTCAATTTTT 60
Query 88 CCGGTCA 94
|| ||||
Sbjct 61 CCAGTCA 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5