BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77100.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316625 jgi|Araly1|316625|fgenesh1_pm.C_scaffold_2001658 1552 0.0
> Ahg316625 jgi|Araly1|316625|fgenesh1_pm.C_scaffold_2001658
Length=1011
Score = 1552 bits (840), Expect = 0.0
Identities = 956/1013 (94%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 1 ATGAGCCGTAGAATACGAGAAGATATATCAATTCGTTTGTTTGATCCCAAAATGATCACT 60
||||| ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||
Sbjct 1 ATGAGTCGTAGAATACGAGAAGATATATCGATTAGTTTGTTTGGTCCGAAAATGATCACT 60
Query 61 ATTGCATTATTTCTAGTTTTGTTATATTTTCATGATCAATTAGGTTATTCAGCGGCACAA 120
|||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||
Sbjct 61 GTTGCATTATTTCTAGTTTTGTTTTATTTTCATGATCAGTTAGGTTATTCGGTGGCACAA 120
Query 121 CTTCAGTTTGGATTCTACTCGGAAACATGTCCATCAGCAGAGTCAATCGTTCGTGATGTT 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTCAGTTTGGATTCTACTCAGAAACATGTCCATCAGCAGAATCAATCGTTCGTGATGTT 180
Query 181 GTTCAACAGGCGGTGACCAACGACCCAGGGAAGGCTGCTGTCTTACTCCGTCTCCAGTTC 240
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 GTTCAACATGCGGTGACCAACGACCCCGGAAAGGCTGCTGTCTTACTCCGTCTCCAGTTC 240
Query 241 CACGATTGCTTTGTCGAGGGTTGTGATGGGTCAATACTAATCAAGCATGGTGGGAACGAT 300
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 CACGATTGCTTCGTTGAGGGTTGTGATGGGTCAATACTAATCAAGCATGATGGGAACGAT 300
Query 301 GACGAAAGGTTTGCTGCGGGTAACGCGGGGGTGGCTGGTTTCGATGTTATAGACGAAGCC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GACGAAAGGTTTGCTGCGGGTAACGCGGGTGTGGCTGGTTTCGATGTTATAGACGAAGCC 360
Query 361 AAATCAGAGCTTGAACGTTTTTGTCCGGGCG-TTGTGTCTTGCGCTGACATCGTTGCTCT 419
|||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||
Sbjct 361 AAATCAGAGCTTGAACGTCATTGTCCGGG-GATTGTGTCTTGCGCCGACATCGTTGCTCT 419
Query 420 TGCTGCTAGAGACGCTATTGCTGAGGCAAAAGGACCATTTTATGAAGTTCCAACCGGTCG 479
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 420 TGCTGCTAGAGACGCTATTGCTGAGGTAAAAGGACCATTTTATGAGGTTCCAACCGGTCG 479
Query 480 GAGAGACGGTCTGATTGCAAATGTTGATCATGCTA-AGAACTTGCCAGATGTTCAAGATT 538
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 480 GAGAGACGGTCGGATTGCAAATGTTGGTCATGCTACA-AACTTGCCAGATGTTCAAGATT 538
Query 539 CCATAAATACTTTGAAATCAAAATTTAGAGAAAAAGGGCTTTCAGATCAAGATCTTGTAC 598
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 539 CCATAAGCACTTTGAAATCAAAATTTAGAGAAAAGGGGCTTTCGGATCAAGATCTTGTAC 598
Query 599 TTCTTAGTGCTGGTGCACATACTATTGGTACAACGGCTTGCTTCTTTGTCATACCACGTT 658
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 599 TTCTTAGTGCTGGTGCACATACTATTGGTACAACCGCTTGCTTCTTCGTCATACCACGTT 658
Query 659 TAGATGCTCAAGATCCTACGATAAACCCGGAATTTTTTCAAATCCTGAGGTCAAAGTGTC 718
||||||||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||
Sbjct 659 TAGATGCTCAAGATCCTACCATAAATCCAGAATTCTTTCAAATCCTAAGGTCAAAATGTC 718
Query 719 CCCAAGGCGGTGATGTTAATGTCAGGATTCCGTTGGACTGGGATAGCCAATTTGTGTTTG 778
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CCCAAGGCGGAGATGTTAATGTCAGGATTCCGTTGGACTGGGATAGCCAGTTTGTGTTTG 778
Query 779 ATAACCAAATCTTCCAAAACATCAAAAATGGCAGAGGTGTCATTCTATCGGACTCTGTTT 838
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 ATGACCAAATCTTGCAAAACATCAAAAATGGCAGAGGTGTCATTCTATCGGACTCTGTCT 838
Query 839 TATACCAAGACAATAATATGAAGAAAATCATTGATTCATACTTAGAAACTAATCAAAGTT 898
| ||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 839 TGTACCAAGACAATAGTATGAAAAAAATCATTGATTCGTACCTAGAAACTAATCAAAGTT 898
Query 899 CAAAGGCTAATTTTGCTGCGGATTTCACTAAAGCCATGATAAAGATGGGTGCTATCGGAG 958
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 899 CAAAGGCTAATTTTGCTGCGGATTTTGTTAAAGCCATGGTAAAGATGGGTGCTATCGGAG 958
Query 959 TGAAAATCGGTGCTGAAGGAGAGATTAGACGTTTATGCAGTGCTACAAACTAG 1011
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAAAATCGGTGTTGAAGGAGAGATTAGACGTTTATGCAGTGCTACAAACTAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5