BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77110.1
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927110 jgi|Araly1|927110|scaffold_202671.1 1443 0.0
> Ahg927110 jgi|Araly1|927110|scaffold_202671.1
Length=1696
Score = 1443 bits (781), Expect = 0.0
Identities = 867/909 (95%), Gaps = 3/909 (0%)
Strand=Plus/Plus
Query 867 GATTTAGGCGGGTTCGGATTTACTCGACCCGGATTAGGTGCAAGTCCTAGAAGGCTCTCG 926
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 780 GATTTAGGCGGGTTCGGGTTTACTCGACCCGGATTTGGTGCAAGTCCTAGGCGGCTCTCG 839
Query 927 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCAACACCACGTGCCTCGAACTTTAAC 986
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 840 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCGACGCCACGTGCCTCGAACTTTAAC 899
Query 987 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 959
Query 1047 ATATACCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAA 1106
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATATTCCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAG 1019
Query 1107 GATATCAATGGATCAGTGCCAGAGAAGGAGATTAGCTTCAGAGACGCACTTAAGGCTGCA 1166
||||||||| | | | ||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1020 GATATCAAT-G-T-ACTGCCAGAGAAGGAGATTAGCTTCCGAGACGCACTTAAAGCTGTA 1076
Query 1167 CCACAGGCTACGGCAGCCGGTGGTGGTGCTTCCATGGAGGAAGGAGCCGCCGGAAAAGAC 1226
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1077 CCACAGACTACGGCAGCCGGTGGTGCTGCTTCCATGGAGGAAGGAGCTGCCGGAAAAGAC 1136
Query 1227 ACAACTCCGGTGGCTGCGATTGGCAAGCAAGAAATGCCAAGTGCAATTGTAATGATGCGC 1286
||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||
Sbjct 1137 ACAACTCCGGTGGCTGCTATTGGCAAGCAAGAAATGCCAAGTGCCACTGTAATGGTGCGG 1196
Query 1287 CTCATACTAACAGTCGTGGGCCGCAAGCTTTCTCGAAACCCTAACACTTATTCCAGCCTC 1346
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1197 CTCATACTAACAGTTGTGGGACGCAAGCTTTCTCGAAATCCTAACACTTATTCCAGCCTC 1256
Query 1347 TTAGGTCTTGTCTGGTCACTTATATCCTTCAAATGGAATATACCGATGCCAAATATAGTG 1406
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1257 TTAGGTCTTGTCTGGTCACTTATATCTTTCAAATGGAATATAGCGATGCCAAACATAGTG 1316
Query 1407 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1376
Query 1467 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1436
Query 1527 ATGTTGATCAGGTTCATCTCAGGTCCTCTTTTCATGGCTGGTGCTTCCCTTCTTGTCGGA 1586
|||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 1437 ATGTTGATTAGGTTCATCTCAGGTCCCCTTTTCATGGCTGCTGCTTCTCTTCTTGTCGGA 1496
Query 1587 TTAAGAGGTTCTAGGTTACATGCTGCTATCGTACAGGCTGCTCTACCGCAAGGGATAGTA 1646
|| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1497 TTGAGAGGTTCTAGGCTACATGCTGCCATCGTACAGGCGGCTCTACCGCAAGGGATAGTA 1556
Query 1647 CCATTTGTGTTTGCGAGGGAGTACAATTTGCATCCAGACCTACTCAGTACATTGGTTATC 1706
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 CCGTTTGTGTTTGCAAGGGAGTACAATTTGCATCCAGACTTACTCAGTACATTGGTTATC 1616
Query 1707 TTTGGGATGATAGTATCTTTACCAGTAACTATTTTGTACTACGTCCTCTTGGGCCTATGA 1766
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 TTTGGCATGATAGTATCTTTACCAGTAACTATTCTGTACTACGTCCTCTTGGGCCTATGA 1676
Query 1767 TTCACACAA 1775
|||||||||
Sbjct 1677 TTCACACAA 1685
Score = 1182 bits (640), Expect = 0.0
Identities = 735/781 (94%), Gaps = 5/781 (1%)
Strand=Plus/Plus
Query 37 AAGAGGCAAAGAAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 96
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAGAAGCAAAGCAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 63
Query 97 CACCACTCTACTTCGCCATGTTCGTGGCTTATGGATCGGTAAAGTGGTGCAAGATCTTCA 156
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 64 CACCACTCTACTTTGCCATGTTCGTGGCTTATGGATCGGTGAAGTGGTGGAAGATCTTCA 123
Query 157 CGCCGGCGCAATGTTCCGGAATCAACCGTTTTGTCTCCGTTTTCGCCGTCCCAGTCCTCT 216
||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 124 CGCCGACGCAATGTTCCGGAATCAACCGTTTTGTCTCAGTTTTCGCCGTCCCTCTCCTCT 183
Query 217 CTTTCCACTTCATCTCACAAAACAACCCTTACAAAATGGACACAATGTTCATCCTCGCCG 276
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 184 CTTTCCACTTCATCTCACAAAACAATCCTTACAAAATGGACACAATGTTCATCCTCGCCG 243
Query 277 ACACTTTGTCCAAAATCTTCGTCTTCGTTTTGCTCTCTCTATGGGCCGTTTTCTTCAAAG 336
| ||||| |||||||| ||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 244 ATACTTTATCCAAAATATTCGTCTTCGTCTTGCTCTCGCTATGGGCCCTTTTCTTCAAAT 303
Query 337 CCGGTGGTCTCGATTGGCTCATCACTCTATTCTCAATCGCTACTCTCCCTAACACTCTCG 396
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 304 CGGGTGGTCTCGATTGGCTCATCACACTCTTCTCAATCGCTACTCTCCCTAACACTCTCG 363
Query 397 TTATGGGCATACCTTTGCTTCAGGCCATGTATGGAGATTACACTCAAAC-CCTCATGGTC 455
|||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 364 TTATGGGCATACCTTTGCTTCAAGCCATGTATGGAGATTACAC-CAAAAACCTCATGGTC 422
Query 456 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTATTCCTCTTTGAACTC 515
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 423 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTCTTCCTCTTCGAACTC 482
Query 516 CGAGCAGCGAGGTTGCTTATCCGAGCAGAGTTTCCGGGTCAAGCAGCCGGATCAATCGCC 575
|| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 483 CGGGCAGCGAGGTTGCTCATCCGAGCCGAGTTTCCGGGTCAAGCAGCCGGGTCAATTGCC 542
Query 576 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCATGGATCCGCTCCGTACAGAA 635
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 543 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCGTGGATCCCCTCCGTACAGAA 602
Query 636 ACTGAAACCGATGTTAACGGTCGGATCAGGCTCAGGATCCGACGGTCCGTATCATCCGTA 695
||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 603 ACTGAAACCGATGCCAACGGTCGGATCAGACTTAGGATCCGACGGTCCATATCATCCGTA 662
Query 696 CCTGATTCTGTTATGTCCTCCTCCTTGTGCTTAACCCCTAGAGCCTCTAATCTTTCTAAC 755
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 663 CCTGATTCTGTTATGTCCTCCTCCTTGTGTTTAACCCCCAGAGCCTCTAATCTTTCTAAC 722
Query 756 GCCGAGATTTTCTCCGTCAACACTCCTAATAACCGTTTCTTCCACGGCGGAGGAGGAAGC 815
||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 723 GCCGAGATTTTCTCCGTTAACACTCCTAA---CCGTTTCTTTAACGGCGGAGGAGGAAGC 779
Query 816 G 816
|
Sbjct 780 G 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73704624075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5