BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77110.1 Length=1961 Score E Sequences producing significant alignments: (Bits) Value Ahg927110 jgi|Araly1|927110|scaffold_202671.1 1443 0.0 > Ahg927110 jgi|Araly1|927110|scaffold_202671.1 Length=1696 Score = 1443 bits (781), Expect = 0.0 Identities = 867/909 (95%), Gaps = 3/909 (0%) Strand=Plus/Plus Query 867 GATTTAGGCGGGTTCGGATTTACTCGACCCGGATTAGGTGCAAGTCCTAGAAGGCTCTCG 926 ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 780 GATTTAGGCGGGTTCGGGTTTACTCGACCCGGATTTGGTGCAAGTCCTAGGCGGCTCTCG 839 Query 927 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCAACACCACGTGCCTCGAACTTTAAC 986 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 840 GGTTATGCTTCCTCCGATGCTTACTCGTTGCAGCCGACGCCACGTGCCTCGAACTTTAAC 899 Query 987 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 1046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GAGCTTGACGTTAACGGAAACGGTACGCCGGTTTGGATGAAATCTCCTGCCGCCGGGAGA 959 Query 1047 ATATACCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAA 1106 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 ATATTCCGGCAATCTTCGCCGAAGATGATGTGGGAGTCTGGGCAAAGACATGCAGCCAAG 1019 Query 1107 GATATCAATGGATCAGTGCCAGAGAAGGAGATTAGCTTCAGAGACGCACTTAAGGCTGCA 1166 ||||||||| | | | ||||||||||||||||||||||| ||||||||||||| |||| | Sbjct 1020 GATATCAAT-G-T-ACTGCCAGAGAAGGAGATTAGCTTCCGAGACGCACTTAAAGCTGTA 1076 Query 1167 CCACAGGCTACGGCAGCCGGTGGTGGTGCTTCCATGGAGGAAGGAGCCGCCGGAAAAGAC 1226 |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1077 CCACAGACTACGGCAGCCGGTGGTGCTGCTTCCATGGAGGAAGGAGCTGCCGGAAAAGAC 1136 Query 1227 ACAACTCCGGTGGCTGCGATTGGCAAGCAAGAAATGCCAAGTGCAATTGTAATGATGCGC 1286 ||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||| Sbjct 1137 ACAACTCCGGTGGCTGCTATTGGCAAGCAAGAAATGCCAAGTGCCACTGTAATGGTGCGG 1196 Query 1287 CTCATACTAACAGTCGTGGGCCGCAAGCTTTCTCGAAACCCTAACACTTATTCCAGCCTC 1346 |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1197 CTCATACTAACAGTTGTGGGACGCAAGCTTTCTCGAAATCCTAACACTTATTCCAGCCTC 1256 Query 1347 TTAGGTCTTGTCTGGTCACTTATATCCTTCAAATGGAATATACCGATGCCAAATATAGTG 1406 |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| Sbjct 1257 TTAGGTCTTGTCTGGTCACTTATATCTTTCAAATGGAATATAGCGATGCCAAACATAGTG 1316 Query 1407 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 GATTTCTCGATAAAGATCATTTCAGATGCAGGTCTTGGGATGGCTATGTTTAGTTTAGGC 1376 Query 1467 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CTGTTTATGGCGCTGCAGCCAAAGATGATCCCTTGTGGGGCGAAAAAGGCAACAATGGGG 1436 Query 1527 ATGTTGATCAGGTTCATCTCAGGTCCTCTTTTCATGGCTGGTGCTTCCCTTCTTGTCGGA 1586 |||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||| Sbjct 1437 ATGTTGATTAGGTTCATCTCAGGTCCCCTTTTCATGGCTGCTGCTTCTCTTCTTGTCGGA 1496 Query 1587 TTAAGAGGTTCTAGGTTACATGCTGCTATCGTACAGGCTGCTCTACCGCAAGGGATAGTA 1646 || |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1497 TTGAGAGGTTCTAGGCTACATGCTGCCATCGTACAGGCGGCTCTACCGCAAGGGATAGTA 1556 Query 1647 CCATTTGTGTTTGCGAGGGAGTACAATTTGCATCCAGACCTACTCAGTACATTGGTTATC 1706 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1557 CCGTTTGTGTTTGCAAGGGAGTACAATTTGCATCCAGACTTACTCAGTACATTGGTTATC 1616 Query 1707 TTTGGGATGATAGTATCTTTACCAGTAACTATTTTGTACTACGTCCTCTTGGGCCTATGA 1766 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1617 TTTGGCATGATAGTATCTTTACCAGTAACTATTCTGTACTACGTCCTCTTGGGCCTATGA 1676 Query 1767 TTCACACAA 1775 ||||||||| Sbjct 1677 TTCACACAA 1685 Score = 1182 bits (640), Expect = 0.0 Identities = 735/781 (94%), Gaps = 5/781 (1%) Strand=Plus/Plus Query 37 AAGAGGCAAAGAAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 96 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 AAGAAGCAAAGCAAAAGATGATAACGGGAAACGAATTCTACACGGTGATGTGTGCCATGG 63 Query 97 CACCACTCTACTTCGCCATGTTCGTGGCTTATGGATCGGTAAAGTGGTGCAAGATCTTCA 156 ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 64 CACCACTCTACTTTGCCATGTTCGTGGCTTATGGATCGGTGAAGTGGTGGAAGATCTTCA 123 Query 157 CGCCGGCGCAATGTTCCGGAATCAACCGTTTTGTCTCCGTTTTCGCCGTCCCAGTCCTCT 216 ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 124 CGCCGACGCAATGTTCCGGAATCAACCGTTTTGTCTCAGTTTTCGCCGTCCCTCTCCTCT 183 Query 217 CTTTCCACTTCATCTCACAAAACAACCCTTACAAAATGGACACAATGTTCATCCTCGCCG 276 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 184 CTTTCCACTTCATCTCACAAAACAATCCTTACAAAATGGACACAATGTTCATCCTCGCCG 243 Query 277 ACACTTTGTCCAAAATCTTCGTCTTCGTTTTGCTCTCTCTATGGGCCGTTTTCTTCAAAG 336 | ||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||||| Sbjct 244 ATACTTTATCCAAAATATTCGTCTTCGTCTTGCTCTCGCTATGGGCCCTTTTCTTCAAAT 303 Query 337 CCGGTGGTCTCGATTGGCTCATCACTCTATTCTCAATCGCTACTCTCCCTAACACTCTCG 396 | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 304 CGGGTGGTCTCGATTGGCTCATCACACTCTTCTCAATCGCTACTCTCCCTAACACTCTCG 363 Query 397 TTATGGGCATACCTTTGCTTCAGGCCATGTATGGAGATTACACTCAAAC-CCTCATGGTC 455 |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| Sbjct 364 TTATGGGCATACCTTTGCTTCAAGCCATGTATGGAGATTACAC-CAAAAACCTCATGGTC 422 Query 456 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTATTCCTCTTTGAACTC 515 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 423 CAACTCGTTGTTCTTCAATGCATCATTTGGTATACTCTGCTACTCTTCCTCTTCGAACTC 482 Query 516 CGAGCAGCGAGGTTGCTTATCCGAGCAGAGTTTCCGGGTCAAGCAGCCGGATCAATCGCC 575 || |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 483 CGGGCAGCGAGGTTGCTCATCCGAGCCGAGTTTCCGGGTCAAGCAGCCGGGTCAATTGCC 542 Query 576 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCATGGATCCGCTCCGTACAGAA 635 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 543 AAGATCCAAGTCGACGATGACGTCATTTCCTTAGACGGCGTGGATCCCCTCCGTACAGAA 602 Query 636 ACTGAAACCGATGTTAACGGTCGGATCAGGCTCAGGATCCGACGGTCCGTATCATCCGTA 695 ||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 603 ACTGAAACCGATGCCAACGGTCGGATCAGACTTAGGATCCGACGGTCCATATCATCCGTA 662 Query 696 CCTGATTCTGTTATGTCCTCCTCCTTGTGCTTAACCCCTAGAGCCTCTAATCTTTCTAAC 755 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 663 CCTGATTCTGTTATGTCCTCCTCCTTGTGTTTAACCCCCAGAGCCTCTAATCTTTCTAAC 722 Query 756 GCCGAGATTTTCTCCGTCAACACTCCTAATAACCGTTTCTTCCACGGCGGAGGAGGAAGC 815 ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct 723 GCCGAGATTTTCTCCGTTAACACTCCTAA---CCGTTTCTTTAACGGCGGAGGAGGAAGC 779 Query 816 G 816 | Sbjct 780 G 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73704624075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5