BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77122.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476875 jgi|Araly1|476875|fgenesh2_kg.2__2005__AT1G77122.1 1539 0.0
> Ahg476875 jgi|Araly1|476875|fgenesh2_kg.2__2005__AT1G77122.1
Length=1036
Score = 1539 bits (833), Expect = 0.0
Identities = 983/1053 (93%), Gaps = 19/1053 (2%)
Strand=Plus/Plus
Query 42 TCTTCTTC-TTCTTCACTTGCCGGAGAAGATGGATTTG-TTGTTCTGTTTCCGACCGAAT 99
|||||||| ||| ||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1 TCTTCTTCTTTC-TCACTTGCCGGAGAAGATGGATTTGTTTATT-TGTTTCCGACCGAAT 58
Query 100 CAGACTTGTCGGGGAATTTCAGTTTTGCCTGCTTTTAGCATAAGCAATCTTTCCGCCGTC 159
||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 59 CAGTCTTGTCGCGGAATTTCAGTTTTGCCTGCTTTTAGCATAAGCAATGTTTTCGCTGTC 118
Query 160 AATCGTTTCCGTTCGACGACGAGTCTTCGTTTTGGATTTCCGGCGACGCCGTTTCGTCGG 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATCGTTTCCGTTCGACGACGAGTCTTCGTTTTGGATTTCCGGCGACGCCGTTTCGTCGG 178
Query 220 ACTCCAAACTTTACCTTCAAAACTCACGCGAAGAGGAAGAATAAAACGAGTACTTTCGAA 279
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 179 ACTCCAAACTTTACCTTCAATACTCACGCGAAGAAGAAGAATAAAACGAGTACTGTCGAA 238
Query 280 CCGAAACCGAATAAAGTCGAAGAGTTGATCATTgaagaagaagaagaagaagaagaagaa 339
| || |||||| ||||||||||| |||||| || ||||||||||||||||||
Sbjct 239 CAGAGACCGAACAAAGTCGAAGAATTGATC-TT--------TGAAGAAGAAGAAGAAGAA 289
Query 340 gaggagatagttcttcccgaagagattcaagagaatcaagaCGAGTTGCTACTGGATGAT 399
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 290 GAGGAGCTACTTCTTCCCGAAGAGATTCAAGACAATCAAGACGAGTTGCTACTGGATGAT 349
Query 400 GAATATGACGAAGACGATGACGATGACTTTGAGTTCGATGAGAGCGAGGAGGAGCTCTAT 459
| | || || ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 350 G-A-AT-AC---GACGAAGACGATGACTTTGAGTTCGATGAGAGCGAGGAGGAACTTTAT 403
Query 460 GCTGGAGATGGTGGTGGTGGAGGAGGCATCAAACTTGCTGGAACATTATGGGACAAAGTA 519
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 404 GCTGGAGATGGAGGTGGTGGAGGAGGCATTAAACTTGCTGGAACATTATGGGATAAAGAA 463
Query 520 GCATTAGCATTAGCTGTGAAAGTTTGTGAGTCTTTTGATGGTGATTTAGGCATTTATGCC 579
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 464 GCATTGGCATTAGCTGAGAAAGTCTGTGAGTCTTTTGATGGTGATTTAGGCATTTATGCC 523
Query 580 TTCAAGACTCTGCCAAATTCAACCATACAAGTGAGAATCGAGCGGCTCACTAACAAGTTT 639
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 524 TTCAAGACACTGCCTAATTCAACCATACAAGTGCGAATCGAGCGGCTCACTAACAAGTTT 583
Query 640 GGTTCACCAACAATGGAAGACATTGAAGCATTTTCAACAATCTACCGAGCAAAATTGGCT 699
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 584 GGTTCTCCAACAATGGAAGACATTGAAGCATTTTCAACAATCTATAGAGCAAAATTGGCT 643
Query 700 GAAGCAGAACTCGCCAAGTCAATACCGGACAATATCTCTCTAGAGGTTTCATCTCCTGGT 759
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 644 GAAGCTGAACTCGCCAAGTCTATACCGGACAATATCTCTCTAGAGGTTTCATCTCCTGGT 703
Query 760 GTCGAAAGGGTAGTACGAATTCCGCAGGATCTTGATCGGTATAAGGATAGACCGATGTAC 819
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 704 GTTGAAAGGGTAGTACGAATTCCGCAGGATCTTGATCGGTACAAGGACAGACCGATGTAC 763
Query 820 GTGAGGTACACTAACGAGGACACTGAGACCGAAGGTGATGGTATTTTCAGGCTGGTTTCT 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 764 GTGAGGTACACTAACGAGGACACTGAGACCGAAGGTGATGGTATTTTCAGGCTGATTTCT 823
Query 880 TTCGATGTGGAAGCTAAAATCTGCATTTGGGGCATAGCAGATATAAGAGTAAACCGAGAA 939
|||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 824 TTCGATGTGGAAGCCAAAAGCTGCATTTGGGGAATAGCAGACATAAGAGTAAACCGAGAA 883
Query 940 AAGGCCGGCAAAGGAAGACCTTTGAGCAAGAAGCAAAGAGAATGGCGACTCGAAACGGCT 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AAGGCCGGCAAAGGAAGACCTTTGAGCAAGAAGCAAAGAGAATGGCGACTCGAAACGGCT 943
Query 1000 TTCGAGTCACTACGGTTAGTCCGTTTGCATTCTGAATGTTGAGAACACAGTAAAATGGAA 1059
||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||| ||||
Sbjct 944 TTCGAGTCACTGCGGTTAGTCCGCTTGCACTCTGAATGTTGAGAACACAATAAAAAGGAA 1003
Query 1060 TGTGTTTTAGTTTATATTCAAATCTCAATAGAA 1092
||| ||||| |||||||| ||||||||||||||
Sbjct 1004 TGTCTTTTACTTTATATTAAAATCTCAATAGAA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5