BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77140.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476877 jgi|Araly1|476877|fgenesh2_kg.2__2007__AT1G77140.1 3083 0.0
> Ahg476877 jgi|Araly1|476877|fgenesh2_kg.2__2007__AT1G77140.1
Length=1960
Score = 3083 bits (1669), Expect = 0.0
Identities = 1854/1940 (96%), Gaps = 25/1940 (1%)
Strand=Plus/Plus
Query 121 GAATTTTGCGGTGAAACGATGGTTTTGGTTACGTCTGTGCGTGATTACATTAACCGGATG 180
||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAATTTTACGGCGGAACGATGGTTTTGGTTACGTCTGTGCGTGATTACATCAACCGGATG 60
Query 181 CTTCAGGACATCTCCGGCATGAAGGTTCTCATACTCGACTCCGAAACGGTTAGCAATGTA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCAGGATATCTCCGGCATGAAGGTTCTCATACTCGACTCCGAAACGGTTAGCAATGTA 120
Query 241 AGCATTGTGTATTCACAGTCAGAGCTGCTTCAGAAAGAAGTGTTTCTGGTGGAGATGATA 300
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 AGCATTGTGTATTCACAGTCAGAGCTGCTTCAGAAAGAAGTTTTTCTTGTGGAGATGATA 180
Query 301 GATTCAATATCTGTGTCAAAAGAATCGATGTCACATCTGAAAGCTGTTTATTTCATCCGT 360
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GATTCAATCTCTGTGTCAAAAGAATCGATGTCGCATCTGAAAGCTGTTTATTTCATCCGT 240
Query 361 CCAACTTCAGATAATATTCAGAAATTACGATACCAGCTTGCGAATCCTAGATTTGGAGAA 420
||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 241 CCAACTTCAGAGAATATTCAGAAACTACGTTACCAGCTTGCCAATCCTAGATTTGGAGAG 300
Query 421 TACCATTTATTTTTCTCCAATCTGTTGAAGGATACTCAGATTCATATTTTGGCTGATTCC 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TACCATTTATTTTTCTCCAATCTGTTAAAGGATACTCAGATTCATATTTTGGCTGATTCC 360
Query 481 GATGAGCAGGAAGTTGTACAGCAAGTTCAGGAGTATTATGCAGACTTTGTTTCTGGTGAT 540
|| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GACGAGCATGAGGTTGTACAGCAAGTTCAGGAGTATTATGCAGACTTTGTTGCTGGTGAT 420
Query 541 CCATATCATTTCACATTGAATATGGCATCAAATCATCTATATATGATCCCCGCAGTTGTC 600
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 421 CCATATCATTTCACATTGAATATGGCATCAAACCACCTTTATATGATCCCAGCAGTTGTC 480
Query 601 GATCCCTCTGGTTTGCAACGCTTTTCCGATCGGGTTGTTGATGGAATTGCGGCAGTGTTT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCCCTCTGGTTTGCAACGCTTCTCCGATCGGGTTGTTGATGGAATTGCGGCAGTGTTT 540
Query 661 CTGGCGTTGAAACGAAGACCTGTCATCAGATATCAGAGGACCTCTGATACTGCAAAAAGG 720
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 541 CTGGCGTTGAAACGGAGACCTGTCATCAGATATCAGAGGACTTCTGATACTGCGAAAAGG 600
Query 721 ATTGCACACGAAACAGCTAAATTGATGTATCAGCATGAAAGCGCTCTTTTTGACTTTAGA 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTGCACAGGAAACAGCTAAATTGATGTATCAGCATGAAAGCGCTCTTTTTGACTTTAGA 660
Query 781 CGGACTGAAAGCTCTCCGTTGCTACTTGTAATTGACAGAAGAGATGACCCGGTTACCCCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGACTGAAAGCTCTCCGTTGCTACTTGTAATTGACAGAAGAGATGACCCGGTTACCCCA 720
Query 841 TTGCTGAATCAGTGGACATATCAGGCAATGGTGCACGAACTCATAGGACTTCAAGATAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGCTGAATCAGTGGACATATCAGGCAATGGTGCACGAACTCATAGGACTTCAAGATAAT 780
Query 901 AAAGTGGACTTGAAATCCATTGGAAGTCTTCCAAAAGATCAGCAAGTGGAGGTGGTTTTA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAGTGGACTTGAAATCCATTGGAAGTCTTCCAAAAGATCAGCAAGTGGAGGTGGTTTTA 840
Query 961 TCATCAGAACAAGATGCATTTTTCAAATCTAACATGTATGAAAATTTTGGGGATATTGGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCATCAGAACAAGATGCATTTTTCAAATCTAACATGTATGAAAATTTTGGGGATATTGGA 900
Query 1021 ATGAACATCAAGCGAATGGTAGATGACTTTCAGCAGGTGGCCAAGAGTAACCAAAATATC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGAACATCAAGCGAATGGTAGATGACTTTCAGCAGGTGGCCAAGAGTAACCAAAATATC 960
Query 1081 CAGACAGTAGAGGATATGGCCAGATTTGTTGACAACTACCCTGAGTACAAAAAGATGCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGACAGTAGAGGATATGGCCAGATTTGTTGACAACTACCCTGAGTACAAAAAGATGCAA 1020
Query 1141 GGCAACGTTTCAAAGCATGTAACTCTGGTTACTGAAATGAGCAAGCTAGTTGAAGCAAGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGCAACGTTTCAAAGCATGTAACTCTGGTTACTGAAATGAGCAAGCTAGTTGAAGCAAGG 1080
Query 1201 AAACTGATGAC-GGTTTCACAAACAGAGCAGGACTTGGCTTGCAATGGTGGCCAAGGAGC 1259
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAACTGATG-CTGGTTTCACAAACAGAGCAGGACTTGGCTTGCAATGGTGGCCAAGGAGC 1139
Query 1260 TGCATATGAGGCAGTTACGGATCTCTTAAATAATGAAAGTGTGTCTGACATCGACCGGCT 1319
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TGCATATGAGGCAGTTATGGATCTCTTAAATAATGAAAGTGTTTCTGACATCGACCGGCT 1199
Query 1320 GCGTTTGGTAATGCTATATGCTTTGCGCTATGAGAAAGAAAATCCTGTTCAGTTGATGCA 1379
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1200 GCGTTTGGTAATGCTATATGCTTTGCGCTATGAGAAAGAAAACCCCGTTCAGTTGATGCA 1259
Query 1380 ATTGTTCAACAAATTGGCTTCACGGTCTCCCAAGTACAAACCAGGGCTAGTTCAATTTCT 1439
| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1260 ACTGTTCAACAAATTGGCTTCACGGTCTCCCAAGTACAAACCAGGGTTAGTTCAGTTTCT 1319
Query 1440 CTTGAAACAAGCCGGTGTGGAGAAGCGCACTGGTGATCTATTTGGAAACAGAGATCTTTT 1499
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1320 CTTGAAACAAGCCGGTGTGGAGAAGCGTACTGGGGATCTATTTGGAAACAGAGATCTTTT 1379
Query 1500 GAATATAGCACGTAACATGGCTCGTGGACTTAAGGGTGTTGAGAATGTCTACACTCAACA 1559
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1380 GAATATAGCACGAAACATGGCTCGTGGACTTAAGGGGGTTGAGAATGTGTACACTCAACA 1439
Query 1560 TCAGCCTCTTCTGTTTCAAACAATGGAGAGCATAACTAGAGGGAGATTACGAGATGTGGA 1619
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1440 TCAGCCTCTTCTGTTTCAAACAATGGAGAGCATAACCAGAGGGAGATTACGAGATGTGGA 1499
Query 1620 TTACCCATTTGTTGGAGATCATTTTCAACAGGGACGGCCACAAGAGGTGGTTATTTTTAT 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTACCCATTTGTTGGAGATCATTTTCAACAGGGACGGCCACAAGAGGTGGTTATTTTTAT 1559
Query 1680 GGTTGGTGGAACAACATACGAGGAATCACGCTCTGTTGCTCTACAGAATGCCACCAACTC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGTTGGTGGAACAACATACGAGGAATCACGCTCTGTTGCTCTACAGAATGCCACCAACTC 1619
Query 1740 CGGGGTTCGGTTTATTCTCGGCGGCACCGCAGTGCTTAATTCCAAGAGATTTCTAAAGGA 1799
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGGGATTCGGTTTATTCTCGGCGGCACCGCAGTGCTTAATTCCAAGAGATTTCTAAAGGA 1679
Query 1800 CTTGGAAGAAGCACAAAGGATATCAAGATCAGGTAGCCATATGGTGTGAAGAAGATCCAA 1859
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1680 CTTGGAAGAAGCACAAAGGATATCAAGATCAGGTAGCCATATGGTGTGAAT--G-T--AA 1734
Query 1860 AAGAATTTTGTGTAAATTATTTTTTAAGTCTTAAGATTCTTCCGGGGAGCACATAGAAGA 1919
| | || || | || ||| || || | || || || ||||| |||||||
Sbjct 1735 ATTA-TTAAGTCTTAAG-ATTCTTCC-GTATGAA-AT------GGAGAGCA--TAGAAGA 1782
Query 1920 AAGAGACAAATGAAAGAA-GAAGATTGTGGTCAGGTTCGTCGAATCTTTCGTATACATGA 1978
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1783 AAGAGACAAATGAAAGAAAGAAGATTGTGGTCAGGTTTATCGAATCTTTCGTATACAT-- 1840
Query 1979 TGATGATTACCCC-ACCAGAGAT-T-TAATTTTTGGGGTTTGTGTGTGTATTCATCGTGG 2035
||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1841 TGATGATTACCCCCACTAGAGAGATGTAATTTTTGGGGTTTGTGTGTGTATTCATCGTGG 1900
Query 2036 TACAGTTTAATTGGACCGTT 2055
||||||||||||||||||||
Sbjct 1901 TACAGTTTAATTGGACCGTT 1920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5