BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77145.1
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476879 jgi|Araly1|476879|fgenesh2_kg.2__2009__AT1G77160.1 1195 0.0
> Ahg476879 jgi|Araly1|476879|fgenesh2_kg.2__2009__AT1G77160.1
Length=1007
Score = 1195 bits (647), Expect = 0.0
Identities = 782/847 (92%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 2 aaaaaaaaaaaaCCTAGAAGAATAGGAAGAGACACAGGTGAAAGAACATTTTGAGATGGG 61
||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||
Sbjct 1 AAAAAAAAAAAACCTAGAAGAATAGGAAGAG--ACAGGTGAGAGAATA-TTTGAGATGGG 57
Query 62 AAGCTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTCGATTATATCG-A--GTCTCCGAT 118
|||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||
Sbjct 58 AAGCTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTTGATTATATTGAATCATCTCCGAT 117
Query 119 CACCGTCTCCCAGCATATTGAGAGTTCTACAACGGCTCTTATCACTCTTAAGGAGATTCT 178
||| |||||| | ||| |||||| |||| |||||| ||||||||||||| ||||||||||
Sbjct 118 CACTGTCTCCGATCATCTTGAGACTTCTCCAACGGTTCTTATCACTCTTGAGGAGATTCT 177
Query 179 TAGGGCAAAAGGAGAAAAAGAGAAGGAGATGGAAGAGAAGATATGGTCGTTTATCAATG- 237
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||| || |
Sbjct 178 TAGGGCAAAAGGAGAAGAAGAGAAGGAGATGGAAGACAAGATAAAGTCGTTTATGAA-GA 236
Query 238 GAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAGATTGTCT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 237 GAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAAATTGTCT 296
Query 298 CTAAACTCAGATCTGAAGGCTATGATGCTTCTCTCTCCAAAACCTCATGGGACTCTTCTT 357
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 297 CTAAACTCAGATCTGATGGCTACGATGCTTCTGTCTCCAAAACCTCATGGGACTCTTCTT 356
Query 358 TTGATCATCGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTATGAGTACATTGACG 417
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 357 TTGATCTTAGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTACGAGTACATTGACG 416
Query 418 TCATGGTGAAGGGTGATAGCAACCGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTG 477
||||||| ||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 417 TCATGGTCAAGGGTGGTCGCGACGGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTG 476
Query 478 ATCTTGACTTCAAAACTCAGTTTGAGCTAGCGAGACAGACAGAAGCTTACAAAGATATGA 537
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || |
Sbjct 477 ATCTTGACTTCAAATCTCAGTTTGAGCTAGCCAGACAGACACAAGCTTACAAAGACATAA 536
Query 538 CTGAGATGCTTCC-ATTAGTGTTTGTGGCGACAGAAGGGAGACTGAGAAGAGTTGTTTCG 596
||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 537 CTGAGATGCTTCCGAG-AGTGTTCGTGGCGACAGAGGGGAGACTAAGAAGAGTTGTTTCG 595
Query 597 TTGGTTTGTGGTGAGATGAAAAAGTCCATGAAGAAAGAAGGAATGTCTAGGCCTCCATGG 656
|||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 596 TTGGTTTGTGGTGAGATGAAAAAGTCGATGGAGAAAGAAGGAATGTCTAGACCACCATGG 655
Query 657 AGGACTACGAGATACATGCAGTCCAAGTGGCTACCAGAGAATCGTCGAAGAGTCTCCGGT 716
|||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 656 AGGACTTCAAGATACATGCAGTCCAAGTGGCTACCTGAGAATCGTCGAAGAGTCTCTGGT 715
Query 717 TGTAAGAAAGGTTCTTGGTCTTGGTCTGTGTTTGATGATGGTAGTGAAGGAAGAGGTGAA 776
|| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 716 TGCAAGAAAGGGTCTTGGTCTTGGTCTGTGTTTGATGATGGTGGTGAAGGAAAAGGTCAA 775
Query 777 GCTAGGACTTGGACAGTAAGTGGTAGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTC 836
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 776 GCTAGGAGTTGGACAGTGAGTGGTGGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTC 835
Query 837 TGAGAGG 843
|||||||
Sbjct 836 TGAGAGG 842
Score = 196 bits (106), Expect = 2e-49
Identities = 136/149 (91%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 922 ttgttt-tt--ttCGTATGATTATTCC-TTTTTGGG-GGTGTTCTTGAAATTTTTGAATT 976
|||||| || ||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 862 TTGTTTGTTGCTTCTTATGATTATTCCTTTTTTGGGTGGTGTTCTTGAAATTTTTGAATT 921
Query 977 GCTTaaaaaaaaTGTTGGGCTTGTTGTGTCAGGtttttttCTGATGCTATCTATATTGCA 1036
|| ||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 922 GC-CAAAAAAAATGTGGGGCTTG-T-TGTCAAGTTTTTTTCTGATGCTATCTATATTGCA 978
Query 1037 TCTTCTACTTGTATCAATAGCCGATGGAT 1065
||||||||||||||||| |||||||||||
Sbjct 979 TCTTCTACTTGTATCAACAGCCGATGGAT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5