BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77170.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476881 jgi|Araly1|476881|fgenesh2_kg.2__2011__AT1G77170.1 1975 0.0
> Ahg476881 jgi|Araly1|476881|fgenesh2_kg.2__2011__AT1G77170.1
Length=1401
Score = 1975 bits (1069), Expect = 0.0
Identities = 1299/1410 (92%), Gaps = 15/1410 (1%)
Strand=Plus/Plus
Query 2 ATGTTCTTCTCTGGTCTTATCTCCAAGCTTCATGTTCATGGTACTAAGAGAACAAATCAC 61
||||||||||||||||| ||||||||| | ||||||||||||| || |||||||||
Sbjct 1 ATGTTCTTCTCTGGTCTCATCTCCAAG---C---TTCATGGTACTAAAAGGACAAATCAC 54
Query 62 TTCACGATCTTTCACCGTTTGAATCATTTCGTCACTA---CATCATCTTCCTCGGTTACG 118
|| | |||||||||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 55 TTAAAGATCTTTCACCGTTTGAATCATTTCGTCACTATCTCATCATCTTCGTCGATTACG 114
Query 119 CCTCTTTCGCCTCAAGATCGAAACAAACTCTTAGCTACTCTGTTATCAAACTGCACTAGC 178
|||||||||| |||||||||||||| |||||||||||||||||||| || || || |||
Sbjct 115 TCTCTTTCGCCCCAAGATCGAAACAAGCTCTTAGCTACTCTGTTATCTAATTGTACCAGC 174
Query 179 CTAGCTCGTGTTCGTCGGATCCATGGTGACATCTTCCGTTCACGAATCCTCGATCAATAT 238
|| |||||||| ||||| ||||||||||| |||||||||||| | |||||||||||||||
Sbjct 175 CTCGCTCGTGTCCGTCGTATCCATGGTGATATCTTCCGTTCATGCATCCTCGATCAATAT 234
Query 239 CCGATCGCTTTCTTATGGAACAACATCATGCGATCTTACATTCGCCATGAGTCTCCTCTC 298
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 235 CCAATCGCTTTCTTATGGAACAACATCATGCGATCTTACATTCGCCATGATTCTCCTCTC 294
Query 299 GATGCAATTCAAGTATATCTCGGTATGGTGAGATCGACTGTTTTACCCGATCGATATTCT 358
||| || ||||||| |||||||||||||||||||| | |||||| |||||||||||| ||
Sbjct 295 GATTCAGTTCAAGTGTATCTCGGTATGGTGAGATCAAATGTTTTGCCCGATCGATATACT 354
Query 359 CTTCCGATTGTAATCAAAGCAGCCGTTCAAATTCATGATTTTACGTTGGGAAAGGAGCTT 418
|||||||||||||||||||| |||||||| |||||||||||| ||||||||||| || ||
Sbjct 355 CTTCCGATTGTAATCAAAGCCGCCGTTCAGATTCATGATTTTCCGTTGGGAAAGCAGTTT 414
Query 419 CATTCCGTCGCCGTTAGGTTAGGGTTCGTCGGAGATGAGTTCTGCGAGAGTGGGTTCATT 478
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 415 CATTCCGTCGCCGTGAGGTTAGGTTTCGTCGGAGACGAGTTCTGCGAGAGTGGATTCATT 474
Query 479 ACATTGTATTGTAAAGCAGGGGAATTTGAGAACGCACGTAAGGTGTTCGATGAAAATCCT 538
|| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 475 ACGTTGTATTGTAAAGCAGGGGAATTGGAGAATGCACGTAACGTGTTCGATGAAAATCCT 534
Query 539 GAGAGAAAGCTGGGGTCTTGGAACGCCATTATCGGAGGGTTGAATCACGCTGGTCGAGCT 598
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 535 GAGAGAAAGTTGGGGTCTTGGAACGCTATTATCGGAGGGTTGAATCACGCGGGTCGAGCT 594
Query 599 AACGAGGCGGTGGAAATGTTTGTGGATATGAAAAGGAGTGGACTTGAGCCTGATGATTTC 658
||||||||||| ||||||||| |||| |||| |||||||||| ||||||| |||||||||
Sbjct 595 AACGAGGCGGTTGAAATGTTTATGGAGATGAGAAGGAGTGGATTTGAGCCGGATGATTTC 654
Query 659 ACTATGGTTAGTGTGACTGCTTCTTGTGGAGGATTAGGTGACTTGAGCTTGGCTTTTCAG 718
|||||||| ||||||||| | |||||||||||||||||||||||| ||| |||||||||
Sbjct 655 ACTATGGTGAGTGTGACTTCAGCTTGTGGAGGATTAGGTGACTTGAACTTAGCTTTTCAG 714
Query 719 TTGCATAAATGCGTTCTACAAGCTAAGACCGAAGAGAAGTCTGATATCATGATGCTGAAT 778
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 TTGCATAAATGCGTTTTACAAGCTAAGACCGAAGAGAAGTCTGATATCATGATGATGAAT 774
Query 779 TCGCTCATTGATATGTATGGAAAATGTGGGCGTATGGATTTAGCGAGTCACA-TATTCGA 837
|||||||| || |||||||||||||| |||||||||||||| |||| ||| | | |||||
Sbjct 775 TCGCTCATCGACATGTATGGAAAATGCGGGCGTATGGATTTCGCGATTCA-AGTGTTCGA 833
Query 838 GGAAATGCGACAGAGAAACGTTGTCTCTTGGAGTTCTATGATCGTGGGTTACGCAGCTAA 897
||| |||| |||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 834 GGAGATGCCACAGAGAAACGTTGTCTCATGGAGTTCAATGATCACGGGTTACGCAGCTAA 893
Query 898 CGGGAATACATTAGAGGCTTTAGAATGCTTTCGTCAGATGAGAGAATTCGGTGTCAGACC 957
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 894 CGGGAATACATTAGAAGCCTTGGAATGCTTCCGTCAGATGAGAGAATTCGGTGTCAGACC 953
Query 958 AAACAAGATCACGTTCGTTGGAGTTCTCAGTGCTTGCGTCCATGGAGGTCTTGTGGAGGA 1017
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 954 AAACAAGATCACGTTCGTTGGAGTCCTTAGTGCTTGCGTCCATGGAGGTCTTGTGGAGGA 1013
Query 1018 AGGAAAAACATATTTTGCGATGATGAAGTCAGAGTTCGAGCTAGAACCGGGATTATCGCA 1077
||||||| | ||||| || |||||||||||||||||| | ||||||||||||||||||||
Sbjct 1014 AGGAAAAGCGTATTTCGCAATGATGAAGTCAGAGTTCAATCTAGAACCGGGATTATCGCA 1073
Query 1078 TTACGGATGCATAGTTGATCTAT-TGAGCCGTGACGGGCAGCTTAAGGAGGCAAAGAAAG 1136
||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||
Sbjct 1074 TTACGGATGCATAGTTGATCT-TCTGAGCCGGGACGGGCAGCTTAAGGAGGCCAAGAAAG 1132
Query 1137 TTGTTGAGGAGATGCCGATGAAGCCTAACGTGATGGTTTGGGGTTGTTTGATGGGAGGGT 1196
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1133 TTGTGGAAGAGATGCCGATGAAGCCTAACGTGATGGTTTGGGGTTGTTTGATGGGTGGGT 1192
Query 1197 GTGAGAAGTTTGGGGATGTTGAGATGGCTGAGTGGGTGGCTCCATACATGGTTGAGCTTG 1256
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1193 GTGAGAAGTTTGGGGATGTTGAGATGGCTGAGTGGGTGGCTCGATACATGGTTGAGCTAG 1252
Query 1257 AGCCGTGGAACGATGGTGTTTATGTTGTCTTGGCTAATGTGTATGCACTCAGAGGGATGT 1316
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1253 AGCCGTGGAACGATGGTGTTTATGTGGTCTTGGCTAATGTGTATGCGCTAAGAGGGATGT 1312
Query 1317 GGAAAGATGTTGAGAGAGTTAGGAAGTTGATGAAG-ACGAAGAAGGTTGCTAAGATTCCT 1375
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 1313 GGAAAGATGTTGAGAGAGTTAGGAAGATGATGAAGGA-GAAGAAGGTTGCTAAGATTCCT 1371
Query 1376 GCCTATAGCTATGCTTCAACGACATTTTGA 1405
|||| ||||||||||||||| |||||||||
Sbjct 1372 GCCTGTAGCTATGCTTCAACAACATTTTGA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5