BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77200.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476884 jgi|Araly1|476884|fgenesh2_kg.2__2014__AT1G77200.1 1066 0.0
> Ahg476884 jgi|Araly1|476884|fgenesh2_kg.2__2014__AT1G77200.1
Length=744
Score = 1066 bits (577), Expect = 0.0
Identities = 691/745 (93%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 1 ATGACCGAGTCATCCATTATCTCCGTCAAACAATCGTCTCCGGTGCCGGAGGAGGA-G-- 57
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
Sbjct 1 ATGACCGAGTCATCCATCACCTCCGTCAAACAGTCGTCTCCGGTGCCGGAGGAGGAGGTT 60
Query 58 G---ATCATCATCATCA-C--CAACAAGACTCCCACCGAACCAACACCAAGAAACGTGTA 111
| ||||||||||||| | ||| |||| |||||||||| ||||| ||||||||||||
Sbjct 61 GATCATCATCATCATCATCATCAAGAAGAGTCCCACCGAAACAACAACAAGAAACGTGTT 120
Query 112 AGATCCGACCCGGGTTACCGAGGCGTCCGGATGCGAACGTGGGGCAAATGGGTCTCCGAG 171
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACCCGACCCGGGTTACCGAGGCGTCCGGATGCGAACGTGGGGCAAATGGGTCTCCGAG 180
Query 172 ATCCGAGAGCCTCGCAAGAAGAGCCGAATCTGGCTAGGCACTTTCTCCACACCGGAAATG 231
||||||||||| |||||||| || ||||||||||| || ||||||||||||||||| |||
Sbjct 181 ATCCGAGAGCCCCGCAAGAAAAGTCGAATCTGGCTCGGTACTTTCTCCACACCGGAGATG 240
Query 232 GCGGCGCGTGCACATGACGCAGCTGCTCTCACCATTAAAGGAACTTCCGCCGTCCTCAAC 291
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GCGGCGCGTGCACATGACGCAGCTGCTCTCACCATTAAAGGGACTTCCGCCGTCCTCAAC 300
Query 292 TTCCCGGAGCTCGCCACTTACCTTCCCCGTCCAGCTTCCTCCTCTCCACGCGACGTTCAA 351
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTCCCGGAGCTCGCCACTCACCTTCCCCGTCCAGCTTCCTCCTCTCCTCGCGACGTTCAA 360
Query 352 GCCGCAGCCGCCGTAGCGGCCGCCATGGACTTCTCCCCCTCCTCCTCCTCTCTCGTAGTC 411
|| ||||| |||||||| |||||||||||||||||| |||| |||||||| ||| |||||
Sbjct 361 GCAGCAGCTGCCGTAGCAGCCGCCATGGACTTCTCCTCCTCATCCTCCTCCCTCATAGTC 420
Query 412 TCCGATCCAACCACCGTCATCGCCCCAGCTGAGACGCAGT-TGTCTTCCTCGAGCTATTC 470
|| ||||| ||||||||| ||| |||||||||||| || | | |||||||| ||||||||
Sbjct 421 TCTGATCCGACCACCGTCGTCGTCCCAGCTGAGACTCA-TCTATCTTCCTCAAGCTATTC 479
Query 471 AACGTGTACGTCATCGTCGTTGTCACCGTCAAGCGAAGAAGCTGCGTCGACGGCGGAAGA 530
|||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GACGTCTACATCATCGTCATTGTCACCATCAAGCGAAGAAGCTGCGTCGACGGCGGAAGA 539
Query 531 ACTAAGCGAGATAGTGGAGTTACCGAGTCTAGAGACGAGTTACGATGAGTCATTGAGCGA 590
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 ACTCAGCGAGATAGTGGAGTTACCGAGTCTAGAGACGAGTTACGATGAGTCATGGAGCGA 599
Query 591 GTTTGTGTACGTTGACTCGGCGTATCCACCTAGTTCGCCTTGGTATATTAATAATTGTTA 650
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GTTCGTGTACGTTGACTCGGCGTATCCACCTAGTTCGCCTTGGTATATTAATAACTGTTA 659
Query 651 TAGCTTTTATTACCACAGCGACGAAAATGGCATTTCGATGGCTGAACCTTTCGACTCTTC 710
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 660 TAGCTTTTATTACCACAGCGACGAAAATGGCATTTCGATGGGTGAACCTTTTGACTCTTC 719
Query 711 CAATTTTGGCCCCCTTTTTCCTTAG 735
|||||||||||||||||||||||||
Sbjct 720 CAATTTTGGCCCCCTTTTTCCTTAG 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5