BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77210.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927119 jgi|Araly1|927119|scaffold_202680.1 2444 0.0
> Ahg927119 jgi|Araly1|927119|scaffold_202680.1
Length=1577
Score = 2444 bits (1323), Expect = 0.0
Identities = 1489/1570 (95%), Gaps = 8/1570 (1%)
Strand=Plus/Plus
Query 434 TTTTAAAGCCATGGCCGGTGGAGCTCTTACCGATGAAGGAGGCCTAAAGAGAGCTCATCT 493
||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 12 TTTGAAAGCCATGGCCGGTGGAGCTCTTACTGACGAAGGAGCCCTAAAGAGAGCTCATCT 71
Query 494 CTATGAACATCGGATCACTTCTTACTTCATCTTCGCTTGCATCGTCGGATCCATGGGAGG 553
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 72 CTATGAACATCGAATAACTTCTTACTTCATCTTCGCTTGCATCGTTGGATCCATGGGAGG 131
Query 554 CTCTCTTTTCGGCTATGATCTTGGAGTCTCTGGTGGTGTTACATCAATGGACGATTTCTT 613
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 132 CTCTCTCTTCGGCTATGATCTGGGAGTCTCTGGTGGTGTTACTTCAATGGACGATTTCTT 191
Query 614 GAAAGAGTTCTTCCCAGGGATCTACAAAAGAAAGCAAATGCATCTAAACGAAACAGATTA 673
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 192 GAAAGAGTTCTTCCCAGGAATCTACAAAAGAAAGCAAATGCATCTGAACGAAACAGATTA 251
Query 674 CTGCAAATACGACAATCAAATCCTCACACTCTTCACTTCTTCTCTCTACTTCGCCGGTTT 733
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 252 CTGCAAATACGACAATCAAATCCTCACACTCTTCACTTCCTCTCTCTACTTCGCCGGTTT 311
Query 734 AATCTCAACTTTCGGAGCTTCTTACGTCACCAGAATCTACGGTAGGAGAGGAAGCATCCT 793
|||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 312 AATCTCAACTTTTGGAGCTTCCTATGTCACCAGAATCTACGGCAGGAGAGGAAGCATCCT 371
Query 794 CGTTGGCTCTGTCAGCTTCTTCCTCGGAGGAGTGATTAACGCTGCAGCCAAAAACATCCT 853
||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 372 TGTTGGCTCTGTTAGCTTCTTCCTCGGAGGAGTCATTAACGCCGCCGCCAAAAACATCCT 431
Query 854 CATGTTAATCCTTGGTCGAATCTTCCTCGGCATAGGCATTGGATTCGGAAACCAGGCGGT 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CATGTTAATCCTTGGTCGAATCTTCCTCGGCATAGGCATTGGATTCGGAAACCAGGCGGC 491
Query 914 TCCGCTATACCTCTCGGAGATGGCTCCAGCGAAGATTAGAGGAACTGTGAATCAGCTTTT 973
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 492 TCCGTTATACCTCTCGGAGATGGCTCCAGCGAAGATTAGAGGAACCGTGAATCAGCTTTT 551
Query 974 CCAGCTAACAACTTGCATTGGAATTCTAGTTGCTAATTTGATAAACTACAAAACAGAGCA 1033
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 552 CCAGCTAACAACTTGCATTGGCATTCTAGTTGCTAATTTGATAAACTACAAAACAGAGCA 611
Query 1034 AATCCATCCATGGGGATGGAGACTCTCTCTCGGTCTCGCCACCGTCCCAGCTATACTCAT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AATCCATCCATGGGGATGGAGACTCTCTCTCGGTCTCGCCACCGTCCCAGCTATACTCAT 671
Query 1094 GTTCCTCGGTGGACTCGTTTTGCCTGAAACACCCAATAGTCTTGTCGAGCAAGGGAAGCT 1153
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 672 GTTCCTTGGTGGACTCGTTTTGCCCGAAACACCCAACAGTCTTGTCGAGCAAGGGAAGCT 731
Query 1154 CGA-GAAGGCTAAAGCCGTGCTGATCAAAGTACGTGGCACAAACAATATAGAAGCTGAGT 1212
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CGAAGA-GGCTAAAGCCGTACTGATCAAAGTACGTGGCACAAACAATATAGAAGCTGAGT 790
Query 1213 TTCAGGATCTTGTCGAAGCCAGTGACGCTGCTAGAGCCGTGAAGAATCCGTTTCGCAATC 1272
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 791 TTCAGGATCTTGTCGAAGCCAGTGAAGCTGCTAGAGCCGTAAAGAATCCGTTTCGCAATC 850
Query 1273 TTCTTGCTAGAAGAAACAGACCGCAGCTAGTGATTGGAGCCATTGGGCTTCCTGCGTTTC 1332
|||||||| | || |||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 851 TTCTTGCTCGGAGGAACAGACCACAGCTAGTGATTGGAGCGATTGGGATTCCTGCGTTTC 910
Query 1333 AGCAACTAACCGGAATGAATTCGATCCTGTTTTATGCTCCGGTTATGTTTCAGAGCTTAG 1392
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 911 AGCAACTAACCGGAATGAATTCGATTTTGTTTTATGCTCCGGTTATGTTTCAGAGCTTAG 970
Query 1393 GGTTTGGTGGATCTGCGTCGCTTATCTCGTCTACCATTACAAATGCTGCGCTTGTTGTCG 1452
||||||||||||| || || ||||||||||| || |||||||| ||||| || |||||||
Sbjct 971 GGTTTGGTGGATCCGCATCACTTATCTCGTCCACGATTACAAACGCTGCACTCGTTGTCG 1030
Query 1453 CGGCGATCATGTCTATGTATTCAGCTGATAAATTTGGAAGAAGGTTTCTTCTTCTTGAAG 1512
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1031 CGGCGATCATGTCTATGTATTCTGCTGATAAATTTGGAAGAAGGTTTCTTCTTCTTGAAG 1090
Query 1513 CTAGCGTGGAGATGTTCTGTTACATGGTTGTAGTAGGAGTAACACTAGCCTTGAAGTTTG 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CTAGCGTGGAGATGTTCTGTTACATGGTTGTAGTAGGAGTAACACTAGCCTTGAAGTTTG 1150
Query 1573 GGGAAGGTAAGGAGCTACCAAAATCGCTCGGTCTGATTCTTGTGGTCCTTATCTGTCTAT 1632
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1151 GGGAAGGCAAAGAGCTACCAAAATCGCTCGGTGTGATTCTTGTGGTCCTTATCTGTCTAT 1210
Query 1633 TTGTATTGGCGTATGGTCGATCTTGGGGTCCAATGGGATGGTTAGTTCCGAGCGAGCTTT 1692
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1211 TTGTATTGGCGTATGGTCGGTCATGGGGTCCAATGGGATGGTTAGTTCCGAGCGAGCTTT 1270
Query 1693 TCCCTCTAGAGACTCGATCAGCCGGTCAGAGCGTTGTGGTGTGCGTGAACCTTTTCTTCA 1752
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1271 TCCCTTTAGAGACTCGATCAGCCGGTCAGAGTGTTGTGGTGTGCGTAAACCTTTTCTTCA 1330
Query 1753 CGGCTCTAATCGCGCAGTGTTTCCTGGTGTCGCTGTGCCATCTCAAGTACGGAATATTCC 1812
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 1331 CGGCTCTAATCGCGCAGTGCTTCCCCGTGTCGCTGTGCCATCTCAAGTATGGAATATTCC 1390
Query 1813 TTTTATTCGCCGGACTTATATTGGGGATGGGAAGCTTCGTTTACTTTCTGTTGCCGGAGA 1872
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1391 TTTTATTCGCTGGACTTATATTCGGGATGGGAAGTTTCGTTTACTTTCTGTTGCCGGAGA 1450
Query 1873 CGAAACAGGTTCCGATTGAAGAGGTTTATCTTCTTTGGAGACAGCATTGGTTATGGAAGA 1932
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1451 CGAAACAGGTTCCTATTGAAGAGGTTTACCTTCTTTGGAGACAGCATTGGCTATGGAAGA 1510
Query 1933 AATATGTCGAAGATGTTGATGAATAA-GATCAATCGATAAATGAATAAA--CATTTTCTT 1989
||||||| || |||| ||||||| || | ||||||| ||||||| |||| |||||| ||
Sbjct 1511 AATATGTAGAGGATGGTGATGAA-AATGGTCAATCGGTAAATGAGTAAAAACATTTT-TT 1568
Query 1990 GTTTGTCaaa 1999
|||||||||
Sbjct 1569 -TTTGTCAAA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5