BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77230.1
Length=2561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 2228 0.0
Ahg316635 jgi|Araly1|316635|fgenesh1_pm.C_scaffold_2001668 931 0.0
> Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1
Length=1596
Score = 2228 bits (1206), Expect = 0.0
Identities = 1375/1459 (94%), Gaps = 2/1459 (0%)
Strand=Plus/Minus
Query 931 AAATGCACATGGAGTTTCTCCCCACATCTTGTCTGGCTTAGCCACCACAGCTGCTTCCTT 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 AAATGCACATGGAGTTTCTCCCCACATCTTGTCTGGCTTAGCCACCACAGCTGCTTCCTT 1399
Query 991 AATTGCGGGGTTTGTGTACAGAACTGCCTCGAGTTCCGTGCTGCTGATGTTCTCTCCTCC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AATTGCGGGGTTTGTGTACAGAACTGCCTCGAGTTCCGTGCTGCTGATGTTCTCTCCTCC 1339
Query 1051 GCAAATGACCACATCCTTTGATCTGTCTTTGACTTCCAAGTAACCGTCTGGGTGCATTAC 1110
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1338 GCAAATGACCACATCCTTTGATCTGTCTTTGACTTCCAAGTAACCATCTGGGTGCATTAC 1279
Query 1111 TCCAATGTCTCCGGTGTAGAACCATCCGTCTTCTCTCATACTTGCTGCGGTGCCTTCTGG 1170
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1278 ACCAATGTCTCCGGTGTAGAACCATCGGTCTTCTCTCATACTTGCCGCGGTGCCTTCTGG 1219
Query 1171 GTCTTTGTAATAACCTAGCATGACCGAACCGCCTCTGAAGACGATCTCTCCCACAGTTGC 1230
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1218 GTCTTTGTAATAACCCAGCATGACCGAACCGCCTTTGAAGACGATCTCTCCAACAGTTGC 1159
Query 1231 TCCATCATGCTTCACGCTCTTCCCGGATATTGGGTCTCTAACATCGACTTCCGCGAATAC 1290
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1158 TCCATCATGCTTCACGCCCTTCCCGGATAATGGGTCTCTAACATCGACTTCCGCGAATAC 1099
Query 1291 TGCAGTTCTAATTCCTTGCCTTGATTTCTGTTTTGCTCTCT-CGTCTGGTTCTAGACGAT 1349
|||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 1098 CGCAGTTTTAATTCCTTGCCTTGATTTCAGTTTTGCTCT-TGCGTCTGGTTCTAGACGAT 1040
Query 1350 CCCACTCAGGCTTCAATGCGCACGAGACAACCAGACCGCCTGTTTCTGTCATCCCGTAAC 1409
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 CCCACTCAGGCTTCCATGCGCACGAGACAACCAGACCGCCGGTTTCTGTCATCCCGTAAC 980
Query 1410 CGTGACTCACGTCGAAACCAAGCGCCTCAGCCTTGGAGATGACTGTAGCTGGTGGTGGAG 1469
|||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 979 CGTGACCCACGTCGAAACCGAGTGCCTTAGCCTTGGAGATGACTGTAGCTGGTGGTGGAG 920
Query 1470 CTCCAGCAGTCATAACCTTAACTGGGCTCTGAAGCGGTTTCTGGGCTGGGTGATTAGTCA 1529
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 919 CTCCAGCTGTCATAACCTTAACTGGGCTCTGAAGCGGTTTCTGGCCTGGGTAATTGGTCA 860
Query 1530 ACATGTTGAGAACCATTGGCGCAGCGCACATGTGGGTCACTTGATACTTGTCGATCAAGT 1589
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ACATGTTGAGAACCATTGGTGCAGCGCACATGTGGGTCACTTGATACTTGTCGATCAAGT 800
Query 1590 TGAAAATAGTCGGCACATCAACTCTTGTGACACAGATGTTTCTGGCTCCCACAGCTGCTG 1649
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 799 TGAAAATAGTCGGCGCATCAACTCTTGTGACACAGATGTTTGTGGCCCCCACAGCTGCTG 740
Query 1650 TGGCCCATGTGTAGCTCCAACCATTGGCATGGAACATCGGCAGTGTCCACAGGTATACCG 1709
||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct 739 TGGCCCACGTGTAGCTCCACCCATTGGCGTGGAACATCGGTAGGGTCCACAGGTATACCG 680
Query 1710 GACGGTTAGGCAAAGACCAGTCTAGCAAAGAGTTAATAGTGCTCATGAAAACCGATCTGT 1769
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 679 GACAGTTAGGCAAAGACCAGTCTAGCAAAGAGTTAATAGTGCTCATGAAAACTGACCTGT 620
Query 1770 GGCTATGCACCACTCCCTTTGGGGACGACGTAGTTCCTGAGGTGTAGTTAAGCACCATTG 1829
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 619 GGCTATGCACCACTCCCTTTGGAGACGACGTAGTTCCTGAGGTGTAGTTAAGCACCATTG 560
Query 1830 GAGTCCACTCGCTTTTAGGACGTACCCACTTGAACCTCAGGTCTCCTCTCTCCATAAACC 1889
|| |||||||||||| ||||| ||||||||||| || |||||||||||||||| | ||
Sbjct 559 GAACCCACTCGCTTTTCGGACGAACCCACTTGAAACTTGGGTCTCCTCTCTCCATCACCC 500
Query 1890 CTTCGTACGTGTCAAGAAAATCCATATCAGCTGATGAAGATGATGGCATGTCGTTTCCGT 1949
||||||| ||||||||||||||||| ||||| |||| |||||||||| || | |||| ||
Sbjct 499 CTTCGTATGTGTCAAGAAAATCCATGTCAGCCGATGTAGATGATGGCGTGCCATTTCTGT 440
Query 1950 CGTTGAGTATGACGAGACGAGGTCTCTCATCCTTGGGCAAAAACGAGACAGCTTCGAGGA 2009
||||||| |||| ||| ||||| ||||||| ||||||||| |||||||||||||||||||
Sbjct 439 CGTTGAGGATGATGAGGCGAGGCCTCTCATTCTTGGGCAAGAACGAGACAGCTTCGAGGA 380
Query 2010 CTAAAGAGCTTGAGTGATGGTCAACAAACACGAGCTTGGATTCGCTGTGACGTAGAAGGA 2069
||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 379 CTAAAGATCTTGAGTGATGGTCAACAAACATGAGCTTGGATTCACTGTGACGCAGAAGGA 320
Query 2070 CGGAGAGTGCATGAGCGTCTAAACGTGGGTTGATGTTGTTGAGGACTGCGCCTGACATCG 2129
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 319 CGGAAAGTGCGTGAGCGTCTAAACGCGGGTTGATGTTGTTGAGGACTGCGCCTGACATTG 260
Query 2130 GAACTGCGAACTGAAGCTCGTAGACAGATGGGACGTTTGGACCAATAACAGAGACAACTT 2189
|||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 259 GAACCGCGAACTGAAGCTCGTAAACAGATGGAACGTTGGGACCAATAACAGAGACAACTT 200
Query 2190 GGCCGCGGTTGATTCCGAGGGAAGCGGAAGAGAGAGTTGAAGCTATACGGAGACATCGAG 2249
|||| |||||||| |||||||||| |||||||||||||||||| || |||| ||||||||
Sbjct 199 GGCCACGGTTGATACCGAGGGAAGAGGAAGAGAGAGTTGAAGCGATGCGGAAACATCGAG 140
Query 2250 AATGAGTTTCAGACCAAGTATGAACAGTGGTTGTGTGGAGGAGTGAAGGAGAGTCGCCGA 2309
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 139 AATGAGTTTCAGACCAAGTATGGACGGTGGTTGTGTGGAGGAGGGAAGGAGAGTCGCCGA 80
Query 2310 AGACAGAGGCGGCTCGTTCTAAGAAGCCAAGAACAGTGAGAGGACATGAGTTTGAAGCGT 2369
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 79 AGACGGAGGCGGCTCGTTCTAAGAAGCCGAGAACAGTGAGAGGACAGGAGTTTGAAGCGT 20
Query 2370 GTGGGAGTAAAAGTTCCAT 2388
|||||||||||||||||||
Sbjct 19 GTGGGAGTAAAAGTTCCAT 1
Score = 239 bits (129), Expect = 9e-62
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 751 TCAAGGCAAGGACTTAGCCATTTGTCTGAGAAGAAACTTTTGAATCTTTCCAGTAGAAGT 810
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 TCAAGGAAAGGACTTAGCAATTTGTCTGAGAAGAAACTTTTGAATCTTTCCAGTAGAAGT 1537
Query 811 CTTTGGAAGCTCTTCCAGGAAAACCACATTCCTTGGAACCATATACTTTGGCAGCTTGGT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CTTTGGAAGCTCTTCCAGGAAAACCACATTCCTTGGAACCATATACTTTGGCAGCTTGGT 1477
Query 871 TTTACAAAACTCCCGTAT 888
|||||||||||||| |||
Sbjct 1476 TTTACAAAACTCCCTTAT 1459
> Ahg316635 jgi|Araly1|316635|fgenesh1_pm.C_scaffold_2001668
Length=645
Score = 931 bits (504), Expect = 0.0
Identities = 608/657 (93%), Gaps = 12/657 (2%)
Strand=Plus/Plus
Query 10 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGTTTGGTTTTATCGAATTTC 69
||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct 1 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGCGTAGCTCTATCGAATTTC 60
Query 70 CCGGATCTTCCTTTCGAGAAGGATGATTCTCTAGAGTCTCAATCTCATCTTCATTTTCGT 129
||||||||||||||||||||||||||| ||| |||||| |||||||||| ||| ||||||
Sbjct 61 CCGGATCTTCCTTTCGAGAAGGATGATGCTCCAGAGTCCCAATCTCATCGTCAGTTTCGT 120
Query 130 GAAGATGATATTGATCGTAGACAAACTACCGATCAATTGGACTCGTCGGAGGTTGGAGGG 189
||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 121 GAAGATGATATTGGTCGTAGACAAATTACCGATCAATTGGACTCGTC-----------GG 169
Query 190 AATCATCCTCGTGAGAATTTCGATGTCGAAGCTAAGAAACTCGCAGAGTCCATTAGAGCC 249
|||||||||||||||| |||||| ||||||||||| | || ||||||||||| ||||||
Sbjct 170 -ATCATCCTCGTGAGAAATTCGATCTCGAAGCTAAGGATCTGGCAGAGTCCATAAGAGCC 228
Query 250 CAAGGAGACAAGTTCGCTGAGGAAGGAAAATACCAGGAGGCTCTAGGGAAATGGGAAGCT 309
|||||||| || | ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 229 CAAGGAGATAAACTAGCTGAGGAAGGTAAATACCAGGAGGCTCTGGGGAAATGGGAAGCT 288
Query 310 GCTCTTAATCTTGTTCCCGAAGATGCAATCCTGCATGAACAGAAAGCACAAGTGTTACTT 369
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 289 GCTCTTAATCTTCTTCCCGAAGATGCAGTCCTGCATGAACAGAAAGCACAAGTGTTACTT 348
Query 370 GAGCTTGGTGATGCATGGAAAGCACTCAAAGCTGCAACACGAGCTACTGAGATAGATCCA 429
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 349 GAGCTTGGTGATGCATGGAAAGCACTCAAGGCTGCAACACGAGCTACTGAGATAGATCCA 408
Query 430 TCGTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAGCCGGAC 489
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 TCTTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAACCGGAC 468
Query 490 AGTGCTATCAGGAGTTTTGAAAGTGCATTATTGATCAATGCGGATTCCAGAGAGGCTAAA 549
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 469 AGTGCTATCAGGAGTTTTGAAAGTGCATTATCGATCAATGCGGATTCCAGAGAGGCGAAC 528
Query 550 GACGATCTTAAAAGTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 609
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GACGATCTAAAAACTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 588
Query 610 CAGGACACCGACACTACACGATTTGTGGTCAACGACAAGAACATAGAGCCAAACTAA 666
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 589 CAGGACACCGACACTAAACGTTTTGTGGTCGACGACAAGAACATAGAGCCAAACTAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96558771075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5