BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77230.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 2228 0.0 Ahg316635 jgi|Araly1|316635|fgenesh1_pm.C_scaffold_2001668 931 0.0 > Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 Length=1596 Score = 2228 bits (1206), Expect = 0.0 Identities = 1375/1459 (94%), Gaps = 2/1459 (0%) Strand=Plus/Minus Query 931 AAATGCACATGGAGTTTCTCCCCACATCTTGTCTGGCTTAGCCACCACAGCTGCTTCCTT 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1458 AAATGCACATGGAGTTTCTCCCCACATCTTGTCTGGCTTAGCCACCACAGCTGCTTCCTT 1399 Query 991 AATTGCGGGGTTTGTGTACAGAACTGCCTCGAGTTCCGTGCTGCTGATGTTCTCTCCTCC 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 AATTGCGGGGTTTGTGTACAGAACTGCCTCGAGTTCCGTGCTGCTGATGTTCTCTCCTCC 1339 Query 1051 GCAAATGACCACATCCTTTGATCTGTCTTTGACTTCCAAGTAACCGTCTGGGTGCATTAC 1110 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1338 GCAAATGACCACATCCTTTGATCTGTCTTTGACTTCCAAGTAACCATCTGGGTGCATTAC 1279 Query 1111 TCCAATGTCTCCGGTGTAGAACCATCCGTCTTCTCTCATACTTGCTGCGGTGCCTTCTGG 1170 ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1278 ACCAATGTCTCCGGTGTAGAACCATCGGTCTTCTCTCATACTTGCCGCGGTGCCTTCTGG 1219 Query 1171 GTCTTTGTAATAACCTAGCATGACCGAACCGCCTCTGAAGACGATCTCTCCCACAGTTGC 1230 ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| Sbjct 1218 GTCTTTGTAATAACCCAGCATGACCGAACCGCCTTTGAAGACGATCTCTCCAACAGTTGC 1159 Query 1231 TCCATCATGCTTCACGCTCTTCCCGGATATTGGGTCTCTAACATCGACTTCCGCGAATAC 1290 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1158 TCCATCATGCTTCACGCCCTTCCCGGATAATGGGTCTCTAACATCGACTTCCGCGAATAC 1099 Query 1291 TGCAGTTCTAATTCCTTGCCTTGATTTCTGTTTTGCTCTCT-CGTCTGGTTCTAGACGAT 1349 |||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||| Sbjct 1098 CGCAGTTTTAATTCCTTGCCTTGATTTCAGTTTTGCTCT-TGCGTCTGGTTCTAGACGAT 1040 Query 1350 CCCACTCAGGCTTCAATGCGCACGAGACAACCAGACCGCCTGTTTCTGTCATCCCGTAAC 1409 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1039 CCCACTCAGGCTTCCATGCGCACGAGACAACCAGACCGCCGGTTTCTGTCATCCCGTAAC 980 Query 1410 CGTGACTCACGTCGAAACCAAGCGCCTCAGCCTTGGAGATGACTGTAGCTGGTGGTGGAG 1469 |||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 979 CGTGACCCACGTCGAAACCGAGTGCCTTAGCCTTGGAGATGACTGTAGCTGGTGGTGGAG 920 Query 1470 CTCCAGCAGTCATAACCTTAACTGGGCTCTGAAGCGGTTTCTGGGCTGGGTGATTAGTCA 1529 ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||| Sbjct 919 CTCCAGCTGTCATAACCTTAACTGGGCTCTGAAGCGGTTTCTGGCCTGGGTAATTGGTCA 860 Query 1530 ACATGTTGAGAACCATTGGCGCAGCGCACATGTGGGTCACTTGATACTTGTCGATCAAGT 1589 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 859 ACATGTTGAGAACCATTGGTGCAGCGCACATGTGGGTCACTTGATACTTGTCGATCAAGT 800 Query 1590 TGAAAATAGTCGGCACATCAACTCTTGTGACACAGATGTTTCTGGCTCCCACAGCTGCTG 1649 |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 799 TGAAAATAGTCGGCGCATCAACTCTTGTGACACAGATGTTTGTGGCCCCCACAGCTGCTG 740 Query 1650 TGGCCCATGTGTAGCTCCAACCATTGGCATGGAACATCGGCAGTGTCCACAGGTATACCG 1709 ||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct 739 TGGCCCACGTGTAGCTCCACCCATTGGCGTGGAACATCGGTAGGGTCCACAGGTATACCG 680 Query 1710 GACGGTTAGGCAAAGACCAGTCTAGCAAAGAGTTAATAGTGCTCATGAAAACCGATCTGT 1769 ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 679 GACAGTTAGGCAAAGACCAGTCTAGCAAAGAGTTAATAGTGCTCATGAAAACTGACCTGT 620 Query 1770 GGCTATGCACCACTCCCTTTGGGGACGACGTAGTTCCTGAGGTGTAGTTAAGCACCATTG 1829 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 619 GGCTATGCACCACTCCCTTTGGAGACGACGTAGTTCCTGAGGTGTAGTTAAGCACCATTG 560 Query 1830 GAGTCCACTCGCTTTTAGGACGTACCCACTTGAACCTCAGGTCTCCTCTCTCCATAAACC 1889 || |||||||||||| ||||| ||||||||||| || |||||||||||||||| | || Sbjct 559 GAACCCACTCGCTTTTCGGACGAACCCACTTGAAACTTGGGTCTCCTCTCTCCATCACCC 500 Query 1890 CTTCGTACGTGTCAAGAAAATCCATATCAGCTGATGAAGATGATGGCATGTCGTTTCCGT 1949 ||||||| ||||||||||||||||| ||||| |||| |||||||||| || | |||| || Sbjct 499 CTTCGTATGTGTCAAGAAAATCCATGTCAGCCGATGTAGATGATGGCGTGCCATTTCTGT 440 Query 1950 CGTTGAGTATGACGAGACGAGGTCTCTCATCCTTGGGCAAAAACGAGACAGCTTCGAGGA 2009 ||||||| |||| ||| ||||| ||||||| ||||||||| ||||||||||||||||||| Sbjct 439 CGTTGAGGATGATGAGGCGAGGCCTCTCATTCTTGGGCAAGAACGAGACAGCTTCGAGGA 380 Query 2010 CTAAAGAGCTTGAGTGATGGTCAACAAACACGAGCTTGGATTCGCTGTGACGTAGAAGGA 2069 ||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||| Sbjct 379 CTAAAGATCTTGAGTGATGGTCAACAAACATGAGCTTGGATTCACTGTGACGCAGAAGGA 320 Query 2070 CGGAGAGTGCATGAGCGTCTAAACGTGGGTTGATGTTGTTGAGGACTGCGCCTGACATCG 2129 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 319 CGGAAAGTGCGTGAGCGTCTAAACGCGGGTTGATGTTGTTGAGGACTGCGCCTGACATTG 260 Query 2130 GAACTGCGAACTGAAGCTCGTAGACAGATGGGACGTTTGGACCAATAACAGAGACAACTT 2189 |||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 259 GAACCGCGAACTGAAGCTCGTAAACAGATGGAACGTTGGGACCAATAACAGAGACAACTT 200 Query 2190 GGCCGCGGTTGATTCCGAGGGAAGCGGAAGAGAGAGTTGAAGCTATACGGAGACATCGAG 2249 |||| |||||||| |||||||||| |||||||||||||||||| || |||| |||||||| Sbjct 199 GGCCACGGTTGATACCGAGGGAAGAGGAAGAGAGAGTTGAAGCGATGCGGAAACATCGAG 140 Query 2250 AATGAGTTTCAGACCAAGTATGAACAGTGGTTGTGTGGAGGAGTGAAGGAGAGTCGCCGA 2309 |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 139 AATGAGTTTCAGACCAAGTATGGACGGTGGTTGTGTGGAGGAGGGAAGGAGAGTCGCCGA 80 Query 2310 AGACAGAGGCGGCTCGTTCTAAGAAGCCAAGAACAGTGAGAGGACATGAGTTTGAAGCGT 2369 |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 79 AGACGGAGGCGGCTCGTTCTAAGAAGCCGAGAACAGTGAGAGGACAGGAGTTTGAAGCGT 20 Query 2370 GTGGGAGTAAAAGTTCCAT 2388 ||||||||||||||||||| Sbjct 19 GTGGGAGTAAAAGTTCCAT 1 Score = 239 bits (129), Expect = 9e-62 Identities = 135/138 (98%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 751 TCAAGGCAAGGACTTAGCCATTTGTCTGAGAAGAAACTTTTGAATCTTTCCAGTAGAAGT 810 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1596 TCAAGGAAAGGACTTAGCAATTTGTCTGAGAAGAAACTTTTGAATCTTTCCAGTAGAAGT 1537 Query 811 CTTTGGAAGCTCTTCCAGGAAAACCACATTCCTTGGAACCATATACTTTGGCAGCTTGGT 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1536 CTTTGGAAGCTCTTCCAGGAAAACCACATTCCTTGGAACCATATACTTTGGCAGCTTGGT 1477 Query 871 TTTACAAAACTCCCGTAT 888 |||||||||||||| ||| Sbjct 1476 TTTACAAAACTCCCTTAT 1459 > Ahg316635 jgi|Araly1|316635|fgenesh1_pm.C_scaffold_2001668 Length=645 Score = 931 bits (504), Expect = 0.0 Identities = 608/657 (93%), Gaps = 12/657 (2%) Strand=Plus/Plus Query 10 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGTTTGGTTTTATCGAATTTC 69 ||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||| Sbjct 1 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGCGTAGCTCTATCGAATTTC 60 Query 70 CCGGATCTTCCTTTCGAGAAGGATGATTCTCTAGAGTCTCAATCTCATCTTCATTTTCGT 129 ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||| |||||| Sbjct 61 CCGGATCTTCCTTTCGAGAAGGATGATGCTCCAGAGTCCCAATCTCATCGTCAGTTTCGT 120 Query 130 GAAGATGATATTGATCGTAGACAAACTACCGATCAATTGGACTCGTCGGAGGTTGGAGGG 189 ||||||||||||| ||||||||||| ||||||||||||||||||||| || Sbjct 121 GAAGATGATATTGGTCGTAGACAAATTACCGATCAATTGGACTCGTC-----------GG 169 Query 190 AATCATCCTCGTGAGAATTTCGATGTCGAAGCTAAGAAACTCGCAGAGTCCATTAGAGCC 249 |||||||||||||||| |||||| ||||||||||| | || ||||||||||| |||||| Sbjct 170 -ATCATCCTCGTGAGAAATTCGATCTCGAAGCTAAGGATCTGGCAGAGTCCATAAGAGCC 228 Query 250 CAAGGAGACAAGTTCGCTGAGGAAGGAAAATACCAGGAGGCTCTAGGGAAATGGGAAGCT 309 |||||||| || | ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 229 CAAGGAGATAAACTAGCTGAGGAAGGTAAATACCAGGAGGCTCTGGGGAAATGGGAAGCT 288 Query 310 GCTCTTAATCTTGTTCCCGAAGATGCAATCCTGCATGAACAGAAAGCACAAGTGTTACTT 369 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 289 GCTCTTAATCTTCTTCCCGAAGATGCAGTCCTGCATGAACAGAAAGCACAAGTGTTACTT 348 Query 370 GAGCTTGGTGATGCATGGAAAGCACTCAAAGCTGCAACACGAGCTACTGAGATAGATCCA 429 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 349 GAGCTTGGTGATGCATGGAAAGCACTCAAGGCTGCAACACGAGCTACTGAGATAGATCCA 408 Query 430 TCGTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAGCCGGAC 489 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 409 TCTTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAACCGGAC 468 Query 490 AGTGCTATCAGGAGTTTTGAAAGTGCATTATTGATCAATGCGGATTCCAGAGAGGCTAAA 549 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 469 AGTGCTATCAGGAGTTTTGAAAGTGCATTATCGATCAATGCGGATTCCAGAGAGGCGAAC 528 Query 550 GACGATCTTAAAAGTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 609 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 GACGATCTAAAAACTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 588 Query 610 CAGGACACCGACACTACACGATTTGTGGTCAACGACAAGAACATAGAGCCAAACTAA 666 |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| Sbjct 589 CAGGACACCGACACTAAACGTTTTGTGGTCGACGACAAGAACATAGAGCCAAACTAA 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96558771075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5