BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77240.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 2228 0.0
> Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1
Length=1596
Score = 2228 bits (1206), Expect = 0.0
Identities = 1375/1459 (94%), Gaps = 2/1459 (0%)
Strand=Plus/Plus
Query 195 ATGGAACTTTTACTCCCACACGCTTCAAACTCATGTCCTCTCACTGTTCTTGGCTTCTTA 254
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGAACTTTTACTCCCACACGCTTCAAACTCCTGTCCTCTCACTGTTCTCGGCTTCTTA 60
Query 255 GAACGAGCCGCCTCTGTCTTCGGCGACTCTCCTTCACTCCTCCACACAACCACTGTTCAT 314
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 61 GAACGAGCCGCCTCCGTCTTCGGCGACTCTCCTTCCCTCCTCCACACAACCACCGTCCAT 120
Query 315 ACTTGGTCTGAAACTCATTCTCGATGTCTCCGTATAGCTTCAACTCTCTCTTCCGCTTCC 374
||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||
Sbjct 121 ACTTGGTCTGAAACTCATTCTCGATGTTTCCGCATCGCTTCAACTCTCTCTTCCTCTTCC 180
Query 375 CTCGGAATCAACCGCGGCCAAGTTGTCTCTGTTATTGGTCCAAACGTCCCATCTGTCTAC 434
||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 181 CTCGGTATCAACCGTGGCCAAGTTGTCTCTGTTATTGGTCCCAACGTTCCATCTGTTTAC 240
Query 435 GAGCTTCAGTTCGCAGTTCCGATGTCAGGCGCAGTCCTCAACAACATCAACCCACGTTTA 494
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GAGCTTCAGTTCGCGGTTCCAATGTCAGGCGCAGTCCTCAACAACATCAACCCGCGTTTA 300
Query 495 GACGCTCATGCACTCTCCGTCCTTCTACGTCACAGCGAATCCAAGCTCGTGTTTGTTGAC 554
|||||||| ||||| ||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 301 GACGCTCACGCACTTTCCGTCCTTCTGCGTCACAGTGAATCCAAGCTCATGTTTGTTGAC 360
Query 555 CATCACTCAAGCTCTTTAGTCCTCGAAGCTGTCTCGTTTTTGCCCAAGGATGAGAGACCT 614
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 361 CATCACTCAAGATCTTTAGTCCTCGAAGCTGTCTCGTTCTTGCCCAAGAATGAGAGGCCT 420
Query 615 CGTCTCGTCATACTCAACGACGGAAACGACATGCCATCATCTTCATCAGCTGATATGGAT 674
|| ||| |||| ||||||||| |||| | || |||||||||| |||| ||||| ||||||
Sbjct 421 CGCCTCATCATCCTCAACGACAGAAATGGCACGCCATCATCTACATCGGCTGACATGGAT 480
Query 675 TTTCTTGACACGTACGAAGGGTTTATGGAGAGAGGAGACCTGAGGTTCAAGTGGGTACGT 734
||||||||||| ||||||||| | |||||||||||||||| || ||||||||||| |||
Sbjct 481 TTTCTTGACACATACGAAGGGGTGATGGAGAGAGGAGACCCAAGTTTCAAGTGGGTTCGT 540
Query 735 CCTAAAAGCGAGTGGACTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCCCCA 794
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CCGAAAAGCGAGTGGGTTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCTCCA 600
Query 795 AAGGGAGTGGTGCATAGCCACAGATCGGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 854
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 601 AAGGGAGTGGTGCATAGCCACAGGTCAGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 660
Query 855 TGGTCTTTGCCTAACCGTCCGGTATACCTGTGGACACTGCCGATGTTCCATGCCAATGGT 914
||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 661 TGGTCTTTGCCTAACTGTCCGGTATACCTGTGGACCCTACCGATGTTCCACGCCAATGGG 720
Query 915 TGGAGCTACACATGGGCCACAGCAGCTGTGGGAGCCAGAAACATCTGTGTCACAAGAGTT 974
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 721 TGGAGCTACACGTGGGCCACAGCAGCTGTGGGGGCCACAAACATCTGTGTCACAAGAGTT 780
Query 975 GATGTGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCG 1034
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GATGCGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCA 840
Query 1035 CCAATGGTTCTCAACATGTTGACTAATCACCCAGCCCAGAAACCGCTTCAGAGCCCAGTT 1094
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 841 CCAATGGTTCTCAACATGTTGACCAATTACCCAGGCCAGAAACCGCTTCAGAGCCCAGTT 900
Query 1095 AAGGTTATGACTGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTGAGGCGCTT 1154
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 901 AAGGTTATGACAGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTAAGGCACTC 960
Query 1155 GGTTTCGACGTGAGTCACGGTTACGGGATGACAGAAACAGGCGGTCTGGTTGTCTCGTGC 1214
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 GGTTTCGACGTGGGTCACGGTTACGGGATGACAGAAACCGGCGGTCTGGTTGTCTCGTGC 1020
Query 1215 GCATTGAAGCCTGAGTGGGATCGTCTAGAACCAGACG-AGAGAGCAAAACAGAAATCAAG 1273
|||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1021 GCATGGAAGCCTGAGTGGGATCGTCTAGAACCAGACGCA-AGAGCAAAACTGAAATCAAG 1079
Query 1274 GCAAGGAATTAGAACTGCAGTATTCGCGGAAGTCGATGTTAGAGACCCAATATCCGGGAA 1333
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 GCAAGGAATTAAAACTGCGGTATTCGCGGAAGTCGATGTTAGAGACCCATTATCCGGGAA 1139
Query 1334 GAGCGTGAAGCATGATGGAGCAACTGTGGGAGAGATCGTCTTCAGAGGCGGTTCGGTCAT 1393
| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1140 GGGCGTGAAGCATGATGGAGCAACTGTTGGAGAGATCGTCTTCAAAGGCGGTTCGGTCAT 1199
Query 1394 GCTAGGTTATTACAAAGACCCAGAAGGCACCGCAGCAAGTATGAGAGAAGACGGATGGTT 1453
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1200 GCTGGGTTATTACAAAGACCCAGAAGGCACCGCGGCAAGTATGAGAGAAGACCGATGGTT 1259
Query 1454 CTACACCGGAGACATTGGAGTAATGCACCCAGACGGTTACTTGGAAGTCAAAGACAGATC 1513
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 CTACACCGGAGACATTGGTGTAATGCACCCAGATGGTTACTTGGAAGTCAAAGACAGATC 1319
Query 1514 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1379
Query 1574 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 1439
Query 1634 AGAAACTCCATGTGCATTT 1652
|||||||||||||||||||
Sbjct 1440 AGAAACTCCATGTGCATTT 1458
Score = 239 bits (129), Expect = 6e-62
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1695 ATACGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1754
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518
Query 1755 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATG 1814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578
Query 1815 GCTAAGTCCTTGCCTTGA 1832
||||||||||| ||||||
Sbjct 1579 GCTAAGTCCTTTCCTTGA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68790982470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5