BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77270.1
Length=2520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927125 jgi|Araly1|927125|scaffold_202686.1 1195 0.0
> Ahg927125 jgi|Araly1|927125|scaffold_202686.1
Length=2512
Score = 1195 bits (647), Expect = 0.0
Identities = 832/917 (91%), Gaps = 30/917 (3%)
Strand=Plus/Plus
Query 1448 AAAGAATACGAGAAATGATGAGTCTCAGACAATTTTCAGAGCTTCAAAGAGACTGAAGAC 1507
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AAAGCATACGAGAAATGATGAGTCTCAGACAATTTTCAGAGCTTCAAAGAGACTGAAGAC 1669
Query 1508 TGAGATTGGGAGAGCAGATCATAACTCGATTTCAAAGACTAACCCA--G-TGGTTAAAAC 1564
|||||||||||||||||| ||||||||||||||||||||| |||| | ||||||| ||
Sbjct 1670 TGAGATTGGGAGAGCAGAAAATAACTCGATTTCAAAGACTATCCCAGTGTTGGTTAACAC 1729
Query 1565 CAAAGATATTCAACGAAA-GAACCGAGAGGCTTTGCGGGGAAGGAAGA-TCCATGTGACC 1622
||||||||| |||||||| ||| ||||||||||||||||| ||||||| ||| |||||||
Sbjct 1730 CAAAGATATCCAACGAAAGGAA-CGAGAGGCTTTGCGGGGTAGGAAGATTCC-TGTGACC 1787
Query 1623 AAGCACAATAATGAATCGAAATCTAGAGGTCATGTCATAGACAA-CTTATTTCACAGTTT 1681
|||||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||
Sbjct 1788 AAGCACAATAATGAATCGAAATCTAGAGGTAATGTCAAAGA-AAGCTTATTTCACAGTTG 1846
Query 1682 CAAACCTTCCAAGAAGGAGAATGAAA-TGAGCTTATCGTCAGTGGAAAAAAGCTATTCAT 1740
||||| | ||||| ||||||| ||| |||| |||||||| |||| |||| ||||||||
Sbjct 1847 CAAACATGCCAAGCAGGAGAA-AAAAGAGAGCCTATCGTCAATGGATAAAACCTATTCAT 1905
Query 1741 ATTACACAGCTTTTCTAAGAAACTCCATAAGAAATTCCGTTACCATCTTCAATTCGGGA- 1799
||||| ||| | | | | | ||||||||||| ||||||||||||| || |||
Sbjct 1906 ATTACGTAGC---T-T-----A-T-C-TAAGAAATTCCATTACCATCTTCAAATC-GGAT 1952
Query 1800 CAACAAGTGAAACCTATGAAAGATGCAGTGTGTTTGTCTGATCCTGATATTATTGCAGTC 1859
| ||| |||||||||||||||| || |||||||||||| |||||||||||||||||| ||
Sbjct 1953 CGACAGGTGAAACCTATGAAAGGTGAAGTGTGTTTGTCCGATCCTGATATTATTGCAATC 2012
Query 1860 AGTAATCACCCCTTTCCGGATGGAGGCAAATCCCCATTTGAGGCAACAAAAGACGGCAAA 1919
||| |||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 2013 AGTGATCACCCCTTTCCGGATGGAGGCAAATCGCCATTCGAGGCAACTAATGACGGCAAA 2072
Query 1920 GTGATAGATCTGGAAGATGGTATTAAACCTGATGATATATTCAACTCTTCGTTTAGCAAG 1979
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2073 GTGATAGATCTTGAAGATGGTATTAAACCTGATGATATATTCAACTCTTGGTTTAGCAAG 2132
Query 1980 AAGCTAATGGAAATTCTCAGAAATCCCTACGATGAAAAGGAATTCTTGAGACTCTATAAT 2039
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2133 AAGCTAATGGAAATTCTCAGAAATCCCTATGATGAAAAGGAGTTCTTGAGACTCTATAAT 2192
Query 2040 GAAGCATCAGTCAAGAGACCGTTGACTAAGTCCAGGCAATTACGAGATGGAAGAGAGATT 2099
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2193 GAGGCATCACTCAAGAGACCGTTGACTAAGTCTAGGCAATTACGAGATGGAAGAGAGATT 2252
Query 2100 GAATATTATTG-T-GACGACCAGTTTGCCCTTTCATATCTCGAAAAGTATACAGATTTCA 2157
||||| || || | || || |||| || |||||||||||||||||||||||||||||||
Sbjct 2253 GAATA-TAATGATCAAC-ACAAGTTGGCACTTTCATATCTCGAAAAGTATACAGATTTCA 2310
Query 2158 ACAAGACGTATCATCGTTACCGGAAGGATCTTCCTAGAGCTTTGAACCTGTTGCGCGGAT 2217
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2311 ACAAGAAGTATCATCGTTATCGGAAGGATCTTCCTAGAGCTTTGAACCTGTTGCGCGGGT 2370
Query 2218 TTTTCTTTTATTTAGAGAACATAGTTCTTGAAGGTGCATTCAAACCCTGGCTGCATGAAA 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 TTTTCTTTTATTTAGAGAACATAGTTCTTGAAGGTGCATTCAAACCCTGGCTGCATGAAA 2430
Query 2278 AACGTTTGACAAAATTTGTGTGTTGATACTAGAGGGTGCATAGATATTGTAGGCAACAAG 2337
||||||||||||| | ||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 2431 AACGTTTGACAAA-TCTGTGTGTTGATGCTAGAGGGTGCAAAGATATGGTAGGCAACAAG 2489
Query 2338 TAACGCGGCACTGCACT 2354
||| ||||||| |||||
Sbjct 2490 TAAAGCGGCACCGCACT 2506
Score = 915 bits (495), Expect = 0.0
Identities = 936/1130 (83%), Gaps = 106/1130 (9%)
Strand=Plus/Plus
Query 399 GTGAAGATGGAAATAAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAAAATGATGGAT 458
||||||| |||||||||||| |||||||||||||||||||||||||||| |||| || |
Sbjct 459 GTGAAGAAGGAAATAAAGACCGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGCCT 518
Query 459 CTTTGTGTTGAAAG-GAACGCGTCAAAGGATGATGCTTTAGCTAAGAAGAACCCGAAGAA 517
| ||| | || ||| ||| || ||| ||||| | |||||||| || ||||
Sbjct 519 C-TTG-G-TG-AAGTGAATGCATCAGGGGATGGTTCTTTAGCT------AA---GAAG-- 563
Query 518 ATCTGCT-GTGGCTAAGACCATTTTGAATAAGGAAATCATTGAGATTGAGTCTGATACAG 576
|||| | ||||||||||||||| |||| ||||||||||||| ||||||||| || ||||
Sbjct 564 -TCTG-TGGTGGCTAAGACCATTGTGAAGAAGGAAATCATTGCGATTGAGTCAGACACAG 621
Query 577 ACACAGATGAAGTTGGTCCTAGAAAGTTGCCTCTTTGTAATGAAGAGAATGCATCAGGGG 636
||||||||||||||| | ||||| | | |||||| | || ||||||||||||||||
Sbjct 622 ACACAGATGAAGTTGCTGGTAGAATGCCGGCTCTTTTTCGTGCCGAGAATGCATCAGGGG 681
Query 637 ATGATGTTTTAGCTAAGAACCCGAAGAAGTGCT-CTGTGGCTAAGACGATTGTGAAGAAA 695
|||||||||||||||||||| |||| | || || |||||||| |||| |||||||||||
Sbjct 682 ATGATGTTTTAGCTAAGAACTCGAACATGT-CTGCTGTGGCTGAGACAATTGTGAAGAAG 740
Query 696 GAAATA---AAGATTGAG--T--CA-A-ACATAGATGAACTTGGTGGTAG-AT--T-G-- 740
|||||| |||||||| | || | ||| ||||||| |||||||||| || | |
Sbjct 741 GAAATAGTTGAGATTGAGTCTGCCACAGACACAGATGAAGTTGGTGGTAGAATGCTGGCT 800
Query 741 C-------TG--GTGAATGCATCAGGTGATGATGTTTTAGCTAAGAAAC-CGAAGAAGTC 790
| || |||||||||||||| |||||||||||||||||| ||| ||||||| ||
Sbjct 801 CTTTGTGGTGAAGTGAATGCATCAGGGGATGATGTTTTAGCTAAG-AACTCGAAGAATTC 859
Query 791 TGTGGTGGCTAAGACCATTGTGTGGCAGGAAATAATTGAGATTGAGT------CAG---C 841
|| |||||||||| | |||||| | ||||||||||||||||||||| ||| |
Sbjct 860 TGCGGTGGCTAAGTCAATTGTGAAGAAGGAAATAATTGAGATTGAGTCAGCCACAGACAC 919
Query 842 ---CACAGACACAGACACAGATGAAGTTGGTGGTAAAACGTTGTCTCTTTGTGGTAAAGT 898
|||||||||||||||||||||||||| ||||| || | || ||||||||||||||||
Sbjct 920 AGACACAGACACAGACACAGATGAAGTTGATGGTAGAATGCTGGCTCTTTGTGGTAAAGT 979
Query 899 GGATGCATCCGGGGATGATCTTTTAGCTAGAGATGGCAAAACCAAAAGAACCAACCTGCA 958
| ||||||| ||||| ||||||||||||| |||||| | ||| || |||| ||||
Sbjct 980 GAATGCATCAGGGGACGATCTTTTAGCTAAAGATGG------C-AAA-AA-CAACATGCA 1030
Query 959 GA-TTGTTTGTGTTGATGATTGCGATTCCGGTTTGGTTCATGATTTGGAATATAAAAAGT 1017
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1031 -ACTTGTTTGTGTTGATGATTGCGATTCTGGTTTGGTTCATGATTTGGAATATAAAAAGT 1089
Query 1018 ACTTGGCACATTTTAGTGAAA-CGCGGAATGTATATTTGCTTGAGGACAATGTAAGGGGT 1076
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1090 ACTTGGCACATTTTAGTGAAATCG-GGAATCTATATTTGCTTGAGGACAATGTAAGGGGT 1148
Query 1077 AGTTCTCCAGTGCG---TA--T--AATG-----T---ATCATGAAGCACCTGACAGGAGT 1121
||||| || ||||| || | |||| | || |||||| | |||| |||||
Sbjct 1149 AGTTCGCCTGTGCGCATTATGTACAATGTCTCCTACGATTATGAAGAATCTGATAGGAG- 1207
Query 1122 TTAA-GAAAAGCAGTAGAAACCGAGAAGAGTAAAGCAGGGAGAAAGCCAAAGTCTCCTAC 1180
| || ||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1208 TAAAGGAAAAGCAGTAAAAACTGAGAAGAGTAGAGCAGGGAGAAAGGCAAAGTCTCCTAC 1267
Query 1181 CATTTCCAGTGTATCTAAGAGGTTGAAGACTGAGGATGGTAGAGCAGATCATAAGTCGAT 1240
|||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1268 GATTTCCAGTGTATCCAAGAGGTTGAAGACTGAGAATGGTAGAGTAGATCATAAGTCGAT 1327
Query 1241 TTCGAGGACTGTCTTAAGGACCAAAGAAACCCAGCAAAAGAAAGGAGATGAT-GT--TCG 1297
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1328 TTCGAGGACTGTCTTAAGGACCAAAGAAACCCAGCAAAAGAAAGGAGATGCTCGACGTGG 1387
Query 1298 A----------C-GTGG--AAGGAGCTCTATCGAAGTAAAGCCTAGAAGTTATGTCAGAG 1344
| | |||| ||| | |||||||||| ||||||||||||||||||||| ||
Sbjct 1388 AAGAAAGAGTTCTGTGGCCAAG-ACCTCTATCGAATTAAAGCCTAGAAGTTATGTCATAG 1446
Query 1345 ACACCAAAGAACGGAACGGAGATGCTCGACGTGGAAGGAAGATTTCTGTGGCCAAGAACA 1404
|||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ACACAAAACAACAGAATGGAGATGCTCGACGTGGAAGGAAGATTTCTGTGGCCAAGAACA 1506
Query 1405 CTATCGAATCAAAGCCTACAAGATATGTCAGAGACTCTCAAGAAAAGAAT 1454
||||| ||| ||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1507 CTATCAAATTAAAGCCTGCAAGTTATGTCAGAGACTCCCAAGAAAAGAAT 1556
Score = 595 bits (322), Expect = 4e-169
Identities = 600/725 (83%), Gaps = 55/725 (8%)
Strand=Plus/Plus
Query 236 ATAGCCTGC-TAAGTTGAATATGAAGAGGAAG-C--CGAAGAAGTCTGCCT-GGCTTAAG 290
||||||||| |||||||||||||| ||||||| | |||||||| | ||| ||| ||||
Sbjct 1 ATAGCCTGCTTAAGTTGAATATGACGAGGAAGTCGAAGAAGAAGTTTTCCTGGGC-TAAG 59
Query 291 ACTATTGC-GAAGAAGGAAATTATTGAGATTGAGTCTGATACAGAC-ACTGATGATGAAG 348
|| ||| | || |||||||| |||||||| ||||||||||||||| || | ||||| |
Sbjct 60 ACAATT-CTGACCAAGGAAATAATTGAGATCGAGTCTGATACAGACGACACA-GATGATG 117
Query 349 TTGCTGCT---ACAAAGTTGGCTCCTTT-TGGTGAAGAGAATGCGAAGTCTTCGGTGAAG 404
||| |||| | |||||||| | ||| ||||||||||||||| ||||||||||||||
Sbjct 118 TTGGTGCTAGAAGAAAGTTGGAT-TTTTGTGGTGAAGAGAATGCTAAGTCTTCGGTGAAC 176
Query 405 ATGGAAATAAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAAAATGATGGATCTTTGT 464
| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 177 AAGGAAATCAAGACTGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGGATCTTTGC 236
Query 465 GTTGAAAGGAACGCGTCAAAGG-ATGATGCTTTAGCTAAGAAGAACCCGAAGAAATCTGC 523
|||||||||||||| || |||| ||||||||||||||||||| ||| |||||||||||
Sbjct 237 GTTGAAAGGAACGC-TCTAAGGGATGATGCTTTAGCTAAGAAC--CCC-AAGAAATCTGC 292
Query 524 TGTGGCTAAGA---CCATTTTGAATAAGGAAATCATTGAGATTGAGTCTGATACAGACAC 580
||||||||||| ||||| || | |||||||| ||||||||||| ||||| || |||||
Sbjct 293 TGTGGCTAAGAAGACCATTGTGGACAAGGAAATTATTGAGATTGATTCTGACACGGACAC 352
Query 581 AGATGAAGTTGGTCCTAGAAAGTTGCCTCTTTGTAATGAAGAGAATGCATCAGGGGATGA 640
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 353 TGATGAAGTTGGTGCTACAAAGTTGCCTTTTTGTAATGAAGAGAATGCATCAGGGGATAA 412
Query 641 TGTTTTAGCTAAGAACCCGAAGAAGTGCTCTG-TGGCTAAGACGATTGTGAAGAAAGAAA 699
| |||||||||||||||||| |||| || || |||||||||| | ||||||||| ||||
Sbjct 413 TACTTTAGCTAAGAACCCGAACAAGT-CTGTGGTGGCTAAGACCACTGTGAAGAAGGAAA 471
Query 700 TAAAGATTGAGTCAAACATAGATGAACTTGGTGGTAGA-T--TGC-T---GGTGAA-TG- 750
|||||| |||||||||||||||||| || |||||||| | ||| | |||||| ||
Sbjct 472 TAAAGACCGAGTCAAACATAGATGAAGTTTGTGGTAGAATGCTGCCTCTTGGTGAAGTGA 531
Query 751 ---CATCAGGTGATGATGT-TTTAGCTAAGAAACCGAAGAAGTCTGTGGTGGCTAAGACC 806
||||||| |||| | | |||||||||||| | ||||||||||||||||||
Sbjct 532 ATGCATCAGGGGATGGT-TCTTTAGCTAAGAA---G------TCTGTGGTGGCTAAGACC 581
Query 807 ATTGTGTGGCAGGAAATAATTGAGATTGAGTCAGCCACAGACACAGACACAGATGAAGTT 866
|||||| | ||||||| |||| ||||||||||| ||| || |||||||||||||||
Sbjct 582 ATTGTGAAGAAGGAAATCATTGCGATTGAGTCAG--ACA--CA--GACACAGATGAAGTT 635
Query 867 GGTGGTAAAACGTTGTCTCTTTGTGGTAAAGTGGATGCATCCGGGGATGATCTTTTAGCT 926
| ||||| || | | |||||| | || | | ||||||| ||||||||| ||||||||
Sbjct 636 GCTGGTAGAATGCCGGCTCTTTTTCGTGCCGAGAATGCATCAGGGGATGATGTTTTAGCT 695
Query 927 AGAGA 931
| |||
Sbjct 696 A-AGA 699
Score = 237 bits (128), Expect = 3e-61
Identities = 242/295 (82%), Gaps = 16/295 (5%)
Strand=Plus/Plus
Query 427 ACATAGATGAAGTTTG-TGGTAAAATGATGGATCTTTGT-GTTGAAAG-GAACGCGTCAA 483
||| |||||||| ||| ||||| |||| || ||||| | | || | ||| || |||
Sbjct 622 ACACAGATGAAG-TTGCTGGTAGAATGCCGGCTCTTTTTCG-TG-CCGAGAATGCATCAG 678
Query 484 AGGATGATGCTTTAGCTAAGAAGAACCCGAAGAAATCTGCTGTGGCTAAGACCATTTTGA 543
|||||||| ||||||| |||||| |||| | |||||||||||| |||| ||| |||
Sbjct 679 GGGATGATGTTTTAGCT---AAGAACTCGAACATGTCTGCTGTGGCTGAGACAATTGTGA 735
Query 544 ATAAGGAAATCA-TTGAGATTGAGTCTGATACAGACACAGATGAAGTTGGTCCTAGAAAG 602
| |||||||| | ||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 736 AGAAGGAAAT-AGTTGAGATTGAGTCTGCCACAGACACAGATGAAGTTGGTGGTAGAATG 794
Query 603 TTGCCTCTTTGTAATGAAGAGAATGCATCAGGGGATGATGTTTTAGCTAAGAACCCGAAG 662
|| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 795 CTGGCTCTTTGTGGTGAAGTGAATGCATCAGGGGATGATGTTTTAGCTAAGAACTCGAAG 854
Query 663 AAGTGCT-CTGTGGCTAAGACGATTGTGAAGAAAGAAATAA---AGATTGAGTCA 713
|| | || | ||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct 855 AATT-CTGCGGTGGCTAAGTCAATTGTGAAGAAGGAAATAATTGAGATTGAGTCA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94997071030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5