BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77290.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476892 jgi|Araly1|476892|fgenesh2_kg.2__2022__AT1G77290.1 1498 0.0
> Ahg476892 jgi|Araly1|476892|fgenesh2_kg.2__2022__AT1G77290.1
Length=1211
Score = 1498 bits (811), Expect = 0.0
Identities = 876/908 (96%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 437 GCTTGAATGTTTAACCCCCACTGCTCCAATGAAATTAGAA-TCTGCTCTGTTTGAATAAT 495
|||||||||||||| ||||||||||||||| |||||||| |||||| ||||||| ||||
Sbjct 305 GCTTGAATGTTTAA-TCCCACTGCTCCAATGTAATTAGAATTCTGCTTTGTTTGACTAAT 363
Query 496 TTGGTAGGAGCCTTGGACAAATAGTTGGAGAGAACTGGTCTGAAACAATGCAGTTATATC 555
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 364 ATGGTAGGAGCCTTGGACAAATAGTTGGAGGGAATTGGTCTGAAGCAATGCAGTTATATC 423
Query 556 ACCATCCTTACTCAATAGACAGCCAAAGAGTGAGACTAGCTTTGGAAGAGAAAGGCATTG 615
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATCATCCTTACTCATTAGACAGCCAAAGAGTGAGACTAGCTTTGGAAGAGAAAGGCATTG 483
Query 616 ATTACACATCATACCATGTCAATCCCATCACAGGCAAGCACATGGACCCTTCCTTCTTTA 675
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 484 ATTACACATCATACCATGTGAATCCCATCACCGGCAAGCACATGGACCCTTCCTTTTTTA 543
Query 676 GGATGAATCCCAACGCCAAACTTCCCGTTTTCAGGAATGGTTCTCACATCATTTTGGACA 735
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGATGAATCCCAACGCTAAACTTCCCGTTTTCAGGAATGGTTCTCACATCATTTTGGACA 603
Query 736 CTATTGAGATCATAGAGTACTTAGAGAGAATAGCTGAAGTTTCCTCTGGTATAGAAGATG 795
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 604 CTATTGAGATCATAGAGTACTTAGAGAGAATAGCTGAGGTTTCCTCTGGTATAGAGGATG 663
Query 796 CTACTTTTAATAGAGAAGTTGTTGAATGGATGCGGAAGATTAGGGAATGGGAGTCCAAAC 855
|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 664 CTACTTTTGGCAGAGAAGTTCTTGAATGGATGCGGAAGATTAGGGAATGGGACTCCAAGC 723
Query 856 TTTTCACTCTTGCTCACATACCGGATAATCGTCGCCTCTATGTTTCCAAGTTCTTGAGGA 915
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 724 TTTTCACTCTTGCTCACATACCGGATAATCGTTGCCTCTATGTTTCCAAGTTCTTGAGGA 783
Query 916 TGGTAGTGATTGCAAGGATGGCTGAGTCTCCAGACTTAGCTAGTGCTTACCATAGGAAGC 975
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGGTTGTGATTGCAAGGATGGCTGAGTCTCCAGACTTAGCTAGTGCTTACCATAGGAAGC 843
Query 976 TAAGGGAAGCATACGATACAGAAGACAAACTAAAAGACCCTGGGGCCTTAAGGAGAAGCA 1035
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TAAGGGAAGCGTACGATACAGAAGACAAACTAAAAGACCCTGGGGCCTTAAGGAGAAGCA 903
Query 1036 AAGACCATTTGCTTAGGCTTCTAGATGAGGTTGAAACAAAGCTAGAGGGGACAACCTATT 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 904 AAGACCATTTGCTTAGGCTTCTAGATGAGGTTGAAACAAAGCTAGAGGGGACAACGTATT 963
Query 1096 TGGCTGGGAATGAGTTTAGTATGGCTGATGTAATGCTAATCCCGGTGCTAGCTCGGTTAT 1155
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGGCAGGGAATGAGTTTAGTATGGCTGATGTAATGCTAATCCCGGTGCTAGCTCGGTTAT 1023
Query 1156 CGCTCTTGGATTTGGAAGAGGAGTATATAAGTAGCAGGAAGAATCTTGCTGAGTATTGGG 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CGCTCTTGGATTTGGAAGAGGAGTATATAAGTAGCAGGAAGAATCTTGCTGAGTATTGGG 1083
Query 1216 CTCTTGTGAGGAGGCGGCCAAGTTACAAGAAGGTAATTGGAAGGTACTTCAATGGCTGGA 1275
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CTGTTGTGAGGAGGCGGCCAAGTTACAAGAAGGTAATTGGAAGGTACTTCAATGGCTGGA 1143
Query 1276 GAAAATATGCAACACTTGTAAAAACTTGGATGTTTGTTAGAGTCAGAAGTTTACTCAGAA 1335
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1144 GAAAATATGCAACACTTGTAAAAACTTGGATGTTTGTTAGAGTCAGAAGTTTGCTCAGAA 1203
Query 1336 AATATTGA 1343
|||| |||
Sbjct 1204 AATACTGA 1211
Score = 276 bits (149), Expect = 3e-73
Identities = 241/281 (86%), Gaps = 23/281 (8%)
Strand=Plus/Plus
Query 116 ATTCAGTTCTTGATCTCGTCTTTCTTTCTCGAAGGTGTTGTTCAGTTTTATTGGG-TATG 174
|||||||||||| | ||||| || |||||||||||| ||||| ||||| ||||| || |
Sbjct 35 ATTCAGTTCTTG-T-TCGTC-TTAGTTCTCGAAGGTG-TGTTCTGTTTTCTTGGGTTA-G 89
Query 175 T-CTTGTCATATT--TCGTC-AGTTCTTGTCTTTGCTTGCTTCAATCTCTGTTTGACGCT 230
| ||| | |||| | ||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 90 TCCTT-T--TATTCCTTGTCTTGTTCTTGTCTTTGTTTGCTTCAATCTCTGTTTGAAGCT 146
Query 231 GTTCTGTTCTGTTATGTTTTATATGTTTTCAAGCTCATGTGTTTGATTCGATTCCTTCAT 290
|||||| | | ||||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 147 GTTCTG-T-T-TTATGTTCTATATGGTCTCAAGCTCATGTGTTTGATTCGATTCCTTAAG 203
Query 291 TATCGTGCTTCAGCCCCTTTTTAGTCCCAGATATGAATCTCTCTTTGTTGAAGTTTC-G- 348
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 204 TATCGTGCTTCAGCCCCTTTTTAGTCCCAAATATGAATCTCTCTTTGTTGAAGTTTCAGG 263
Query 349 ---A-G-GTTTAACAGTTTCTCCTGTAATGTTAATTTGGTG 384
| | | ||||| |||||||||| |||||||||||||||
Sbjct 264 TCTATGAGGTTAACGGTTTCTCCTGAAATGTTAATTTGGTG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5