BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77310.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476896 jgi|Araly1|476896|fgenesh2_kg.2__2026__AT1G77310.1 2146 0.0
Ahg472398 jgi|Araly1|472398|fgenesh2_kg.1__2352__AT1G21610.1 963 0.0
> Ahg476896 jgi|Araly1|476896|fgenesh2_kg.2__2026__AT1G77310.1
Length=2409
Score = 2146 bits (1162), Expect = 0.0
Identities = 1363/1456 (94%), Gaps = 29/1456 (2%)
Strand=Plus/Plus
Query 3 CGCGCAACGTTGTAACAAAAATCGTCCTCTCAGTTCCAATCTCTCTCAGATTCTCCTCCT 62
||| ||||||| ||||||||||| ||||||||||| ||| |||||| ||||| ||
Sbjct 1 CGCACAACGTTCTAACAAAAATCATCCTCTCAGTTGCAA--TCTCTC-----CTCCT-CT 52
Query 63 CATCACA-ATTCCCCACTCCTTTGATTCTTGTCCCAGAGTCACGTCCTCTCCTATTCGGG 121
||||| | |||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 53 CATCA-AGATTCCCCACTCCTTTGATTCTTGT-CCAGAGTCACGTCCTCTCCGATCCGGG 110
Query 122 TCTCTACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACTAAATGGAGGACGAACCA 181
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 111 TCTCCACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACT-AATGGAGGACGAACCA 169
Query 182 AAGCTCCCAACCGATGACGGTCCAACTTTCAACGAATCGTGTAAAATCTCGTCTGAGATA 241
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||
Sbjct 170 AAGCTCCCAACCGATGACGGTCCAACTTTCGGCGAGTCGTGTAAAATCTCGTCAGCGATA 229
Query 242 TTGACCGCCGGTGATCGGAAATTACTTAAAGTTGAACTCC-TCAAAGAGGAGACCACGCT 300
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 230 TTGACTGCCGGTGATCGGAAATTACTTAAAGTTGAACTCCTTC-AAGAGGAGACCACGCA 288
Query 301 CGTATCGTGGAAGAAGCTTATGGATGAGGCTAGCAAAGAAAACGGCGGCTTGTTCGTTTC 360
||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct 289 CGTGTCGTGGAAGAAGCTTATGGACGAGGCTTGCAAGGAAAA---CGGCTTGTTCGCTTC 345
Query 361 GGCTCCCGAACGGCTTCTTAATGCCAACCCTAACCTCGAGTTTCGCCTTGCACCGGGGGC 420
| | |||||||||| || |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 346 GCCCCCCGAACGGCCTCCTAATGCTAACCCTAACCTCGACTTTCGCCTTGCACCGGGGGC 405
Query 421 ACAAACAGAGAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCTGTTATAGC 480
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 406 ACAAACAGAAAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCCGTTATAGC 465
Query 481 CAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGACGGTGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 AAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGATGGTGC 525
Query 541 TCCTGACGATGATGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCCTGACGATGACGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 585
Query 601 GTATTTTGAAGTTGATAATTCGCCAATTAAACATGATGGATTTTTTGTCAATAGAGGAAA 660
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 586 GTATTTTGAAGTTGACAATTCGCCAATAAAACATGATGGATTTTTTGTCAATAGAGGAAA 645
Query 661 GTTAGAACGAATTGAACCTTCAGCTACATCGAACCAGCAGCAACCAAAGAAAAGGCGAAG 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 GTTAGAACGAATTGAACCTTCAGCTACATCAAACCAGCAGCAACCAAAGAAAAGGCGAAG 705
Query 721 GAAGGAGTCAGCAAAACCTTGTGGCGATGTTGTTGATGTATCCAGAAAACGAGCCAAGAT 780
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 706 GAAGGAGTCAGCAAAACCTTGTGGCGACGTTGTTGATGTATCCAGAAAACAAGCCAAAAT 765
Query 781 GGCTAAGACGGCTGGGGGAAAGGATCAATCTGCTTCTCCTGGGCCCTCTTCGAAGAAAAT 840
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 766 GGCTAAGACGGCTGGGGGAAAGGATCAATCAGCTGCTCCTGGGCCCTCTTCGAAGAAAAT 825
Query 841 TTCCAATGATTCAAAGACGGTGCAAGATTCGTTTTCCCCTTTGAAAGCGCAAAATGGCAA 900
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 826 TTCCAATGATTCAAAGACAGTGCAAGATTCGTTTTCCCCTTTGAAAGCTCAAAATGGCAA 885
Query 901 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCACCAGCCAATGAA 960
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 886 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCATCAGCCAATGAA 945
Query 961 TGCCACGAGTCCGAAGTCAAAGGCAGCTGGATCTTCTGGCCCCCTTCATCCGAAGTGCAG 1020
||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 946 TGCCACGAGTCCGAAATCAAAGGCAGCTGGATCGTCTTTCCCCCTTCATCTGAAGTGCA- 1004
Query 1021 C-AGCAAAAGTGTTCATGAACAATCTAATTCCCCTCCAGGAAAATCTCGGCCAAATGTTT 1079
| ||||||| |||||||||||||||||| ||| |||| |||||||||||||| ||
Sbjct 1005 CAAGCAAAA------ATGAACAATCTAATTCCCTTCCCGGAATATCTCGGCCAAATGATT 1058
Query 1080 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGTTAACAATGGCATGCCTGACCTGGACATTG 1139
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1059 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGCTAACAATGGCATGCCTGACCTGGACATTG 1118
Query 1140 CAACGGAAAGC-AAAACATCTATTCAAATATCTaaaaaaaGCGGTTCAAATGGCCGGCCT 1198
||||||||||| |||| |||| ||||||||||||||||| ||||||| |||||| |||||
Sbjct 1119 CAACGGAAAGCGAAAA-ATCTGTTCAAATATCTAAAAAAGGCGGTTCGAATGGCAGGCCT 1177
Query 1199 AAATACTCGACACTTGAGAAAGCCATCA-GGAATTTGGAGAAGTTGGTCGCTGAATCAAG 1257
|||| ||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 1178 AAATCCTCAACACTTGAGAAAGCCATCAGGGAA-TTGGAGAAGGTGGTCGCTGAATCAAG 1236
Query 1258 GCCTCCTGCTGCCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1317
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCCTCCTGCTGTCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1296
Query 1318 ATTGCCAGGAGATGTAAAATTGCATCTTGCTAAAGTTGCTAGAATCGCGTATGCGAGCCA 1377
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1297 ATTGCCAGGAGATGTAAAATTGAATCTTGCTAAAGTTGCTAGAATCGCGCATGCGAGCCA 1356
Query 1378 AGGTGAAATATCAGGAGAGTTAATCAATCGTCTCATGGGCATTGTCGGTCATCTAATACA 1437
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1357 AGGAGATATATCAGGAGAGTTAATCAATCGTCTCATGAGCATTGTCGGTCATCTAATACA 1416
Query 1438 GATTAGATCACTTAAG 1453
||||||||||||||||
Sbjct 1417 GATTAGATCACTTAAG 1432
Score = 1262 bits (683), Expect = 0.0
Identities = 836/909 (92%), Gaps = 14/909 (2%)
Strand=Plus/Plus
Query 1580 GAAACAAATCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGATCTCTTGGAAAG 1639
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1505 GAAACAAGTCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGCTCTCTTGGAAAG 1564
Query 1640 TCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGAAAAATTGTGTGATCTATAT 1699
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1565 CCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGCAAAATTGTGTGATCTATAT 1624
Query 1700 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTTCACAAATCAGAAAGCTTTATTCA 1759
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 1625 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTCCACAGATTAGAAAGCTTTATTCA 1684
Query 1760 GATCTAGCTCAACTGTGGCCCAATAGTTTAGTTGACAATCATGAGATCAGGCGTGCCATT 1819
||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1685 GATCTAGCTGAACTCTGGCCAAATAGGTTAGTGGACAATCATGAGATCAGGCGTGCCATT 1744
Query 1820 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGGAAGGAAACATTGGGAAGGAGATGGATCAA 1879
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1745 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGAAAGGAAACCTTGGGAAGGAGATGGATCAA 1804
Query 1880 ACGAAGATAACAAAGAAGAAACAGACACAATTGGTCCCTAAATCTGAGGGTATTACTTAT 1939
|||| |||| ||||||||||| |||||||||||||||| ||||| ||||||| |||||||
Sbjct 1805 ACGACGATAGCAAAGAAGAAAGAGACACAATTGGTCCCAAAATCAGAGGGTACTACTTAT 1864
Query 1940 CCCGACAAGACTTCAGGTGTTGAAGTTAAAGCAAGTGTTGTCCTAACTGCAACCACCACG 1999
||||||||| |||||||||||| ||||| ||| ||||||||||||| |||||| ||||||
Sbjct 1865 CCCGACAAGGCTTCAGGTGTTGGAGTTATAGCGAGTGTTGTCCTAAGTGCAACTACCACG 1924
Query 2000 TCCTTAGTGGACTGTCAACCTGCAGCAGACTCGTCCTTTGAAAGGTCAAAGCAGCAACAT 2059
||||||||||||||| || ||||| |||| ||||||| ||||||||||||| ||||| ||
Sbjct 1925 TCCTTAGTGGACTGTGAAGCTGCATCAGATTCGTCCTGTGAAAGGTCAAAGAAGCAAAAT 1984
Query 2060 GAGAAATTAAAGCGAACTTCGAGCTTAAGCAATCCTGCAGCAGAAGGAAAGAAAGTCAGA 2119
|||||| ||||| |||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1985 GAGAAACTAAAGGGAACCTCGAGCTTAAGCAACCCTGCAGCAGAAGGAAAGACAGTCAGA 2044
Query 2120 AGAAAGACAGAACCAGCTCTAGAAGAAACTCACCTGCCCGCAGAGAAACCCCTCGTTCTG 2179
|||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 2045 AGAAAGACAGAACCAGCTGTAGAAAAAACTCAGCTGCCCGCAGAGAAACCTCTCGTTCTG 2104
Query 2180 GCCCTGAAGCGGCAGACACATCTAAAATCCAAGACACATAAACAGGTACAGGTACATCCA 2239
|||||||||| ||||| ||||| | | |||||| |||||||| ||| |||||||||||||
Sbjct 2105 GCCCTGAAGCAGCAGAAACATCCACAGTCCAAGGCACATAAAAAGGCACAGGTACATCCA 2164
Query 2240 CAGTCCAAGGCACATAAACAGGCACAGGTACATCCAA-AGGCCAAGACACA------GAC 2292
|||||||||||||||||||||||||| |||||| || ||||||||||||| |||
Sbjct 2165 CAGTCCAAGGCACATAAACAGGCACAAGTACATG-AACAGGCCAAGACACAAACACAGAC 2223
Query 2293 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTACAGCTTAGAttttttttCTCAAAGTC 2352
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2224 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTCCAGCTTAG-TTTTTTTTGTCAAAGTC 2282
Query 2353 TGGCTCTAGCCTTGCCTTTGTTTTTCGTAGCTATAGTTTCGCTTCTAATTTTTGCGCCTA 2412
||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 2283 TGGCTCTAGCCGTGCCTTTGTTCTTCGTAGCTATAGTTTGGCTTCTAATTTTTGCGCCTA 2342
Query 2413 GT-ATTGATTTTCTAGTCGTTTCTTACGTAGAAGACGAAGTCC-CTCTCCTC-GTTACAA 2469
|| || |||| ||||| |||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2343 GTTAT-GATTCTCTAGCCGTTTCTTACGTAGAAGACGAAGTCCTCTCTCCTCTGT-ACAA 2400
Query 2470 ATTAAAGAT 2478
|||||||||
Sbjct 2401 ATTAAAGAT 2409
> Ahg472398 jgi|Araly1|472398|fgenesh2_kg.1__2352__AT1G21610.1
Length=2530
Score = 963 bits (521), Expect = 0.0
Identities = 1313/1683 (78%), Gaps = 103/1683 (6%)
Strand=Plus/Plus
Query 242 TTGACCGCCGGTGATCGGAAATTACTTAAAGTTGAAC-TCCTCAAAGAGGAGACCACGCT 300
||||| |||||||||||||||||||| || || || | || | | ||| || || |
Sbjct 239 TTGACGGCCGGTGATCGGAAATTACTCAAGGTGGAGCTTCGAC-CTGGGGATACGAC-TT 296
Query 301 -CGTATCGTGGAAGAAGCTTATGGA-TGAGGCTAGCAAAGAAAACGGCGGCTTGTTC-GT 357
|| ||||||||||||||||| || || | ||| || | || || || || |
Sbjct 297 ATGTTTCGTGGAAGAAGCTTAT-GAGGGATGTTAGTAAGGTCAA---TGG-TTCATCGGC 351
Query 358 TTCGGCTCCCGAACGGCTTCTTAATGCCAACCCTAACCTCGAGTTTCGCCTTGCACCGGG 417
||||| |||||| | || || |||||| |||||||||||||||| ||| ||||||| ||
Sbjct 352 TTCGGTTCCCGATCCGCCTCCTAATGCTAACCCTAACCTCGAGTCTCGAATTGCACC-GG 410
Query 418 GGCA-CAAACAGAGAATGAAATG-GTGAATCAACCTCATCCTAATCGTCTT-AACTCTGT 474
|||| | | |||||| ||||| | |||| ||||||||| |||| | | || ||| ||||
Sbjct 411 GGCATCCAGCAGAGATTGAAACGAATGAA-CAACCTCATTCTAACCAT-TTCAACGCTGT 468
Query 475 TATAGCCAAGATTGAGAGACTTTATATGGGTAAA-GACGGTAGTGATGGGGAAGAGTTAG 533
||| | ||||| ||||| || |||| ||| ||| || | |||||||||||||||||||
Sbjct 469 TATTGAGAAGATAGAGAGGCTCTATAAGGG-AAACGATAGCAGTGATGGGGAAGAGTTAG 527
Query 534 ACGGTGCTCCTGACGATGATGACTATGACACTGAAGATTCATTTATCGATGATGCTGAAT 593
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 528 ACGGTGCTCCTGATGATGATGAGTATGACACTGAAGATTCATTTATTGATGATGCTGAAC 587
Query 594 TGGATGAGTATTTTGAAGTTGATAATTCGCCAATTAAACATGATGGATTTTTTGTCA-AT 652
|||||||||||||||||||||||||||| || |||||||||||||||||| ||| | ||
Sbjct 588 TGGATGAGTATTTTGAAGTTGATAATTCAACAGTTAAACATGATGGATTTTATGT-ATAT 646
Query 653 AGAGG-AAAGTTAGAACGAATTGAACCTTCAGCTACATC-GAACCAGCAGCAACCAAAGA 710
||||| ||| | || || || ||||||||| | ||||| | ||||||| | ||||| |
Sbjct 647 AGAGGCAAA-CTGGAGCGGATGGAACCTTCAACAACATCTG-ACCAGCA--ACCCAAA-A 701
Query 711 AAAGGCGAAGGAAGGAGTCAGCAAAACCTTGTGGCGATGTTGTTGATGTATCCAGA-AAA 769
|| ||||| | || || ||| ||||||| ||||| |||| ||||| |||||| || |||
Sbjct 702 AACGGCGACGAAAAGATTCAACAAAACCATGTGGTGATGCAGTTGACGTATCC-GATAAA 760
Query 770 CGA-GCCAAGATGGCTA-AGACGGCTGGGGGAAAGGATCAATCTGCTTCTCCTGGGCCCT 827
| | ||||| || ||| | || ||| || ||||||||||||| || || ||||| |||
Sbjct 761 C-ACACCAAGTTGTCTATA-ACAGCTAGGCGAAAGGATCAATCAACTGCTTCTGGGTCCT 818
Query 828 CTTCGAAGA-AAATTTCCAATGAT-TCAAAGACGGTGCAAGATTC-GTTTTCCCCTTTGA 884
||| ||||| ||| | |||| | ||| || || || || ||| || ||||
Sbjct 819 CTTTGAAGAGAAA-GTATAATG-TCGCAAGGAAAACACAGGAGTCACCTTTGCCTTTTG- 875
Query 885 AAGCGCAAAATGGC-AATGA-TTCCTTAGT-TTTGGAAAATGTGAAGCATACTGATAAAG 941
||||||| | || ||| | ||| || | | |||| ||||||||||| |||||| ||
Sbjct 876 GAGCGCAAGCT-GCGAAT-ACTTCAGTA-TCTCTGGATGATGTGAAGCATTCTGATAGAG 932
Query 942 CGAATCACCAG-CCAATGAATGCCACGAGTC-CGAAGTCAAAGGCAGCTGGATCTTCTGG 999
| ||||| ||| | || ||||| || |||| | ||||||| || | ||||||| ||| |
Sbjct 933 CAAATCATCAGTCTAA-GAATGATACAAGTCAC-AAGTCAAGGGAAACTGGATCCTCTAG 990
Query 1000 CCCCCTTCATCCGAAGTGCAGCAGCAAAAGTGTT-CATGAACAATCTAATTCCCCT-CCA 1057
||||||||||||| | ||||| |||||| || ||| |||||||||| | |||| |||
Sbjct 991 TGCCCTTCATCCGAAATACAGCAACAAAAG-CTTACATCAACAATCTAAGT-CCCTGCCA 1048
Query 1058 GGAAAATCT-CGGCCAAATGTTTCGGCAAAATCAGCAGTAGTTCGTCAGCAAGTTAACAA 1116
||||||||| | || ||||||| ||| | || ||||||| | |||| ||| |||||
Sbjct 1049 GGAAAATCTCCCACC-AATGTTTTTGCAGAGGCAACAGTAGTCCTTCAGAAAGAAAACAA 1107
Query 1117 TGGCATGCCTGACCTGGAC-ATTGCAACGGAAAGCAAAAC-ATCTATTCAAATATCTaaa 1174
||| |||| | | |||| | | |||||||| |||| | || ||||| |||| ||| ||
Sbjct 1108 TGGTATGCATCAGCTGG-CAAATGCAACGGGAAGC-AGACAATCTAGTCAAGCGTCT-AA 1164
Query 1175 aaaaG-CGGTTCAAATG-GCCGGCCTAAATA-CTCGA-CACTTGAGAAAGCCATCA-GGA 1229
||||| ||||| |||| | | ||||| | ||||| | |||||||||||||| | |||
Sbjct 1165 AAAAGATGGTTCTAATGTG-AAGTCTAAA-ACCTCGATC-CTTGAGAAAGCCATAAGGGA 1221
Query 1230 ATTTGGAGAAGTTGGTCGCTGAATCAAGGCCTCCTGCTGCCACTGAGAATCAAGATGCCG 1289
| ||||||||| |||| || |||||||||||||||||| |||||| |||||||| || |
Sbjct 1222 A-TTGGAGAAGGTGGTTGCGGAATCAAGGCCTCCTGCTATCACTGAAAATCAAGAAGCTG 1280
Query 1290 ATATCTCTTCCCAAGCAGTGAAGAGGGGATTG-CCAGGAGATGTAAAATTGCATCTTGCT 1348
||| ||| ||||| |||||||||||| ||||| ||||| ||||| |||||| | ||||||
Sbjct 1281 ATACCTCATCCCAGGCAGTGAAGAGGAGATTGCCCAGG-GATGTTAAATTGAAACTTGCT 1339
Query 1349 AAAGTTGCTAGAATCGCGTATGCGAGCCAAGGTG-AAATA-TCAGGAGAGTTAATCAATC 1406
||||||||||| || ||| | || |||| ||| | ||| | ||| |||||||||||| |
Sbjct 1340 AAAGTTGCTAGGATTGCGCAGGCAAGCC-AGG-GAAAACATTCAACAGAGTTAATCAACC 1397
Query 1407 GTCTCATGGGCATTGTCGGTCATCTAATACAGATTAGATCACTTAAGAGGAACTTGAAAA 1466
|||| ||| ||||||| ||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 1398 GTCTTATGAGCATTGTTGGTCACCTAATCCAGCTTAGATCACTTAAGAGGAACTTGAAAA 1457
Query 1467 TCATGATTGAT-TCG-ATCGTCACTGCAAATCGAGAAAAAGATACTAGATTTCAGCGGAT 1524
||||||| ||| | | | || ||||| |||||||| |||||||| || |||| ||
Sbjct 1458 TCATGATGGATATGGGAGATTC--TGCAACCCGAGAAAAGGATACTAGGTTCCAGCAAAT 1515
Query 1525 CAAGAGTGAAATAACT-GAGATGTTAAAAAC-ACAAGTTCCACTTG-TGGAATCCCAGGA 1581
||| | |||| | || || ||| ||||| | | ||||| | ||| ||||||| ||||
Sbjct 1516 CAACAATGAAGTT-CTTGATATGATAAAAGCGA-AAGTTTCT-TTGATGGAATCACAGGC 1572
Query 1582 AA-CAAATCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGATCTCTTGGAAAGT 1640
|| |||| || |||| |||||||||||||||||||||||| | | | | ||||
Sbjct 1573 AATCAAACCA-GAAGGTGGAACATCAGACGATTTTCAGGAC-TCAG-TA----GAAAAGC 1625
Query 1641 CACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGAAAAATTGTGTGATCTATATG 1700
|| || ||||||||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct 1626 CATCTTTGAAGAAGTTTGTCATGGATGCAGCATTGGAGGATAAATTGTGTGATCTATATG 1685
Query 1701 ACGTGTTTGTTGAGGGAATGGATGA--AC-ATTCA-GGTTCACAAATCAGAAAGCTTTAT 1756
|| | ||| |||| ||| ||||||| | || || ||| |||||| |||||||| |||
Sbjct 1686 ACATCTTTATTGATGGATTGGATGATGAAGAT-CAAGGTCCACAAAAAAGAAAGCTATAT 1744
Query 1757 -TCAGATCTAGCTCAACTGTGGCCCAATAGTTTAGTTG-ACAATCATGAGATCAGGCGTG 1814
||| |||| ||| |||| ||||| ||||| || | || | ||||||| ||||| ||||
Sbjct 1745 GTCA-ATCTGGCTGAACTCTGGCCAAATAGATT-GATGGATAATCATGGGATCAAACGTG 1802
Query 1815 CCATTTGCCGGGAAAAGGAAAGGCGGAGAGCATTGGAAGGAAACATTGGGAAGGAGATGG 1874
| |||||||||| |||||| || || | ||||||| | |||||| ||| ||| |||||||
Sbjct 1803 CGATTTGCCGGGCAAAGGAGAGACGAAAAGCATTGTATGGAAACCTTGCGAAAGAGATGG 1862
Query 1875 ATC 1877
|||
Sbjct 1863 ATC 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5