BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77330.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476898 jgi|Araly1|476898|fgenesh2_kg.2__2028__AT1G77330.1 1749 0.0
> Ahg476898 jgi|Araly1|476898|fgenesh2_kg.2__2028__AT1G77330.1
Length=1161
Score = 1749 bits (947), Expect = 0.0
Identities = 1108/1182 (94%), Gaps = 26/1182 (2%)
Strand=Plus/Plus
Query 63 tctctctctctctctTTGCGGATCTGAAATGGCGATTCCTGTTATCGATTTCTCCAAACT 122
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTCTCTTTCTCTCTTTGTGGATCTGAAATGGCGATTCCTGTTATCGATTTCTCCAAGCT 60
Query 123 CAATGGTGAAGAAAGAGAGAAGACACTGTCTGAAATCGCTAGAGCTTGCGAAGAGTGGGG 182
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 61 CAATGGTGAAGAAAGGGAGAAGACACTGTCTGAAATAGCTAGAGCTTGTGAAGAATGGGG 120
Query 183 ATTTTTTCAGCTGGTGAACCATGGTATTCCATTGGAGCTTCTAAATAAGGTGAAGAAGCT 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 121 ATTTTTTCAGCTGGTGAACCATGGTATTCCATTGGAGCTTCTGAATAAGGTGAAGAAACT 180
Query 243 GAGCTCAGATTGCTACAAAACAGAGAGAGAAGAAGCATTCAAGACTTCTAATCCCGTGAA 302
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAGCTCAGATTGCTACAAAACAGAGAGAGAAGAAGCATTCAAGACCTCTAATCCCGTGAA 240
Query 303 GTTGCTCAACGAATTGGTTCAAAAGAACTCTGGCGAGAAGCTAGAAAACGTGGACTGGGA 362
||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 241 GTTACTCAACGAATTGGTTCAAAAGAACTCTGGCGAGAAACTCGAAAACGTTGACTGGGA 300
Query 363 AGATGTCTTCACTCTCTTGGACCATAACCAAAACGAATGGCCATCCAACATTAAAGAGAC 422
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AGATGTCTTCACTCTCTTGGACCATAACCAAAACGAATGGCCATCCAACACTAAAGAGAC 360
Query 423 TATGGGAGAATACAGAGAAGAAGTGAGGAAGCTAGCGAGCAAGATGATGGAAGTGATGGA 482
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GATGGGGGAATACAGAGAAGAAGTGAGGAAGCTAGCGAGCAAAATGATGGAAGTGATGGA 420
Query 483 TGAGAATTTGGGTTTGCCTAAAGGTTACATAAAGAAAGCTTTCAATGAAGGAATGGAAGA 542
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 421 TGAGAATTTGGGTTTGCCTAAAGGTTACATTAAGAAAGCTTTTAATGAAGGAATGGAAGA 480
Query 543 TGGAGAAGAGACAGCTTTCTTTGGGACTAAAGTCAGCCATTACCCTCCTTGTCCTCATCC 602
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 481 TGGAGAAGAGACAGCTTTCTTTGGGACTAAAGTCAGCCATTACCCACCTTGCCCTCATCC 540
Query 603 TGAGCTAGTCAATGGCCTTCGAGCTCATACTGATGCAGGAGGTGTCGTTTTGCTT-TTCC 661
||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 541 GGAGCTCGTCAATGGCCTTCGAGCTCATACTGATGCAGGAGGAGTCGTTTTG-TTGTTCC 599
Query 662 AAGACGATGAATATGATGGCCTTCAGGTCTTGAAAGACGGCGAGTGGATCGATGTTCAGC 721
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 600 AAGACGATGAATATGATGGCCTTCAAGTCTTGAAAGGCGGCGAGTGGATCGATGTTCAGC 659
Query 722 CTCTACCTAATGCCATTGTTATCAACACTGGTGATCAGATTGAAGTTCTTAGCAACGGAA 781
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGCTACCTAACGCTATTGTTATCAACACTGGTGATCAGATTGAAGTTCTTAGCAACGGAA 719
Query 782 GGTACAAGAGTGCGTGGCACAGGGTGTTGGCGAGGGAGGAAGGAAACAGAAGGTCTATAG 841
||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 720 GGTACAAAAGCGCGTGGCACAGGGTGTTGGCGAGGGAGGAAGGAAACCGAAGGTCCATAG 779
Query 842 CTTCCTTCTACAATCCGTCGTACAAGGCGGCGATAGGGCCAGCCGCGGTGGCGGAAGAGG 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CTTCCTTCTACAATCCGTCGTACAAGGCGGCGATTGGGCCAGCCGCGGTGGCGGAAGAGG 839
Query 902 AAGGAAGTGAGAAGAAGTATCCAAAGTTTGTGTTTGGAGATTACATGGATGTTTATGCAA 961
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 AAGGAAGTGAGAAGAAGTATCCAAAGTTTGTGTTTGGAGATTACATGGATGTCTATGCAA 899
Query 962 ACCAGAAGTTCATGCCTAAAGAGCCTCGTTTTCTAGCTGTAAAGTCTCTCTAAATGTACT 1021
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 900 ACCAGAAGTTCATGCCTAAGGAGCCTCGTTTTCTAGCTGTAAAGTCTCTCTAAATGT--T 957
Query 1022 ATTTTATTTATTTTTACAGTACTATCACTGTTTTATCTACACCC-A--TTATGTATTTTC 1078
||| | ||||| |||||||||||||||||| ||| | ||||||||||||
Sbjct 958 -TTT-A----------CAGTATTATCACTGTTTTATCTACCCCCCACATTATGTATTTTC 1005
Query 1079 TCTTAAGCTATAAATGCCAAATTATATAGTTAAAAATTTGGCATCTGCTCTCCAGGCTTT 1138
||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1006 TCTTAAGTTATAAATGCCAAATTATATAGTTAAAAATTTGGCATCTGTTCTTCTGGCTTT 1065
Query 1139 AT-AtttttttgtttttttttgttttGCCATGTGATGTATGAATCTTTCTTGTGTGACCT 1197
|| |||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1066 ATGATTT----GTTTTTTTTTGTTTTTCCATGTGATGTATGAATCTTTGTTGTG--ACCT 1119
Query 1198 ATGTTCTTAGTTTTTGAATATAAATGTGTGTGCCTTTTTCTT 1239
|||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1120 ATGTTCTTAGTTTTTGAATACGAATGTGTGTACCTTTTTCTT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5