BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77340.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476899 jgi|Araly1|476899|fgenesh2_kg.2__2029__AT1G77340.1 595 3e-169
> Ahg476899 jgi|Araly1|476899|fgenesh2_kg.2__2029__AT1G77340.1
Length=1149
Score = 595 bits (322), Expect = 3e-169
Identities = 359/377 (95%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 758 ATGACAATTGTTGTCCTAATGTTCGAACATACACAGTGCTTATAGATGCTTTGTGTGGAT 817
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 578 ATGACAACTGTTGTCCTAATGTTCGTACATACACAGTGCTTATAGATGCTTTGTGTGGAT 637
Query 818 CA-GGACAGAAGTCAGAAGCTATGAATTTGTTTAAGCAGATGTCAGAGAGTGGCATTAAG 876
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 638 CAGGGA-AGAAGTCAGAAGCTCTGAATTTGTTTAAGCAGATGTCAGAGAGTGGCATTAAG 696
Query 877 CCTGATGATTGTATGTATACTGTGCTTATTCAGAGTTTTTGTAGTGGAGATACACTTGAT 936
||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 697 CCTGATGTTTATATGTATACTGTGCTTATTCAGAGCTTTTGTAGTGGAGATACACTCGAT 756
Query 937 GAAGCAAGTGGATTGCTAGAACATATGTTGGAGAATGGGTTGATGCCAAATGTTATTACA 996
||||| ||||| |||||||| |||||||| || |||||||||||||||||| ||||||||
Sbjct 757 GAAGCTAGTGGGTTGCTAGATCATATGTTTGAAAATGGGTTGATGCCAAATTTTATTACA 816
Query 997 TACAATGCATTGATCAAAGGTTTTTGTAAGAAGAATGTGCACAAAGCAATGGGACTGCTT 1056
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 817 TACAATGCATTGATCAAAGGGTTTTGTAAGAAGAATGTGCACAAAGCAATGGGACTGCTT 876
Query 1057 AGTAAGATGCTAGAGCAGAATTTGGTTCCAGACTTGATAACTTATAATACATTGATCGCT 1116
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 877 AGTAAGATGCTAGAGCAAAATTTGGTTCCAGACTTGATAACTTATAATACATTGATTGCT 936
Query 1117 GGACAGTGTAGCTCTGG 1133
|||||||||||||||||
Sbjct 937 GGACAGTGTAGCTCTGG 953
Score = 348 bits (188), Expect = 8e-95
Identities = 242/267 (91%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 333 CTTCGAGATTAAATATAAACTTACTCCTAAATGCTACAATAATCTGTTGAGTTCATTAG- 391
||| ||||||||||| | |||| |||||||||||| |||| ||||||||||||||| |
Sbjct 234 CTTTGAGATTAAATACATGCTTAGTCCTAAATGCTATAATACTCTGTTGAGTTCATT-GT 292
Query 392 CTAGATTTGGATTAGTCGAAGAAATGAAGAGACTTTATACTGAAATGTTGGAGGATTTGG 451
||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||
Sbjct 293 CTAGATTTGGATTAGTCGATGAAATGAAGAGACATTATACAGAAATGTTGGACGATTTGG 352
Query 452 TTTCTCCAGACATATACACGTTTAACACATTGGTTAATGGGTATTGTAAGCTTGGATATG 511
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 353 TTTCTCCAGACATTTACACGTTTAACACATTGGTTAATGGGTATTGTATGCTTGGATATG 412
Query 512 TAGTAGAAGCAAAGCAGTATGTGACTTGGCTTATTCAAGCTGGATGTGA-TCCTGATTAT 570
|||||||||||||||||||||||| | |||||||||| ||||| | ||| ||||||||||
Sbjct 413 TAGTAGAAGCAAAGCAGTATGTGAGTAGGCTTATTCAGGCTGGTT-TGACTCCTGATTAT 471
Query 571 TTCACATATA----CTTCTTTTATTAC 593
|||||||||| |||||||||||||
Sbjct 472 TTCACATATATATACTTCTTTTATTAC 498
Score = 158 bits (85), Expect = 1e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 84 TCATGTCTCTTCTCTGTTTTCACTCAATCTTGATCCTCAGACAGCTCTCAGTTTCTCGGA 143
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 71 TCATGTCTCTTCTCTGTTTTCACTCAATCTTGATCCTCAGACAGCTCTCACTTTCTCCGA 130
Query 144 TTGGATCTCTCGGATACCAAACTTCAAGCACAAC 177
||||||||||||||||||||| ||||||||||||
Sbjct 131 TTGGATCTCTCGGATACCAAAATTCAAGCACAAC 164
Score = 130 bits (70), Expect = 3e-29
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 1208 GAGGAATATCGT-TAAGTGAGAAGATTTGTAATGGTCTTCTTAGATGTTACTACAAGCTG 1266
|||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 953 GAGGAATAAC-TGTAAGTGAGAAGATTTGTAATGGTCTTCTTAGATGTTACTATAAGCTG 1011
Query 1267 CAAAAGTATGAGGAAGCTGCAAA 1289
|||||||||||||||||||||||
Sbjct 1012 CAAAAGTATGAGGAAGCTGCAAA 1034
Score = 117 bits (63), Expect = 2e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 633 GGTTTTTAAGGAGATGACTCAGAACGGTTGCCATAGAAATGAGGTTTCTTACACTCAGCT 692
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 500 GGTTTTTAAGGAGATGTCTCAGAACGGTTGCCATAGAAATGAGGTTTCCTACACTCAACT 559
Query 693 TATATATGGTCT 704
||||||||||||
Sbjct 560 TATATATGGTCT 571
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 30 CAAATTGGCAGAACAATCCATCTCTAAAATC 60
|||||||||||||||||||||||||||||||
Sbjct 42 CAAATTGGCAGAACAATCCATCTCTAAAATC 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5