BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77350.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316646 jgi|Araly1|316646|fgenesh1_pm.C_scaffold_2001679           621    2e-177


> Ahg316646 jgi|Araly1|316646|fgenesh1_pm.C_scaffold_2001679
Length=369

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 359/370 (97%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  91   ATGGCAGGAGCTGTTGGAACATCAATGTTAGGGTCTCTTATTGTGTTTACAGTGATCCTC  150
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAGGAGCTGTTGGAACATCGATGCTAGGGTCTCTTATTGTGTTTACAGTGATCCTC  60

Query  151  TCGCTTCAGGAAATTTACAGAGGAAAATTAGCTTCTTCAGAGCTGTTCACGATCCTTGGT  210
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   TCGCTTCAAGAAATTTACAGAGGGAAATTAGCTTCTTCAGAGCTGTTCACGATCCTTGGT  120

Query  211  GGATTCACAAGCTCTCTCCTCTTTTTGTTTTCTCTCACTTTCATTGGAAATTTTCAGGAA  270
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GGATTCACAAGCTCTCTCCTCTTTTTGTTTTCTCTCACTTTCATTGGCAATTTTCAGGAA  180

Query  271  TCTTCTGGCATCAAGAGTGGTTGGGGTGCAGTCATTCTTGCAGAAATCATAGCTCTTATC  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  TCTTCTGGCATCAAGAGTGGTTGGGGTGCAGTCATTCTTGCAGAAATCATAGCTCTTATT  240

Query  331  GCTGCTGGCACGGTTCATCGGGTTTGTATCACAACCTGTTTCCTGTTCTCTGCTGGGCTA  390
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  241  GCTGCTAGCACGGTTCATCGGGTTTGTATCACAACCTGTTTCTTGTTCTCTGCTGGGCTA  300

Query  391  TTGTACGAGGTGAACAAGATCTCTGGATACATGCTATCCAAAACCGAGTC-AAAGTCTAA  449
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  301  TTGTACGAGGTGAACAAGATCTCTGGATACATGCTATCCAAAACCGAGTCCAAA-TCTAA  359

Query  450  GAGACACTGA  459
            |||| |||||
Sbjct  360  GAGATACTGA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5