BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77360.1 Length=1554 Score E Sequences producing significant alignments: (Bits) Value Ahg476900 jgi|Araly1|476900|fgenesh2_kg.2__2030__AT1G77360.1 2268 0.0 > Ahg476900 jgi|Araly1|476900|fgenesh2_kg.2__2030__AT1G77360.1 Length=1449 Score = 2268 bits (1228), Expect = 0.0 Identities = 1370/1441 (95%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 114 GATCAGAATTATCAATCGTCAATCCAGATTCTGCTGTAAGAGTTTTCTGTCTGCGAGGCT 173 |||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 9 GATCAGAATTCTCAATCGTCAATCCAGATTGTGTTCTAAGAGTTTTCTGTCTGCGAGGCT 68 Query 174 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCGGATGTGGCGAAGAACATATCTAAAGT 233 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 69 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCAGATGTGGCCAAGAACATATCTAAAGT 128 Query 234 ATTGATGTCTTCTCCGCAATTGGTGCTTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 293 ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 129 ATTGATGTCTTCTCCACAACTGGTGATTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 188 Query 294 TTCACAAGAAGTTGTAGAAGATGTTTTAAATAGATTCAGGAATGCTGGTTTGTTGACATA 353 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 189 TTCACCAGAAGTTGTAGAAGATGTTTTATATAGATTCAGGAATGCTGGTTTGTTGGCATA 248 Query 354 CAGGTTCTTCCAATGGTCTGAGAAGCAACGGCATTACGAGCATAGTGTTCGTGCGTACCA 413 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 249 CAGGTTCTTCCAATGGTCTGAGAAGCAACGTCATTACGAGCATAGTGTTCGTGCCTACCA 308 Query 414 CATGATGATTGAGTCTACGGCGAAGATAAGGCAGTACAAGCTCATGTGGGATCTTATCAA 473 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 309 CATGATGATTGAGTCTACGGCAAAGATTAGGCAGTACAAGCTCATGTGGGATCTCATCAA 368 Query 474 TGCAATGAGGAAGAAGAAGATGCTAAATGTAGAGACTTTTTGTATCGTGATGAGGAAGTA 533 |||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| Sbjct 369 TGCAATGAGGAAGAAGGAGATGCTAAACGTCGAGACTTTTTGTATCGTAATGAGGAAGTA 428 Query 534 TGCGAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 593 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 CGCCAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 488 Query 594 TTTGCCGCCGAATCTTGTGGCGTTCAACGGGTTGTTGAGTGCGTTGTGTAAATCCAAGAA 653 ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 489 TTTACCGCCAAATCTTGTGGCGTTCAACGGGTTGCTGAGTGCGTTGTGTAAATCCAAGAA 548 Query 654 TGTGAGGAAAGCACAGGAAGTTTTCGAAAATATGAGGGATCGCTTTACGCCTGACTCCAA 713 |||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| || Sbjct 549 TGTGAGGAAATCACAGGAAATTTTCGAGAATATGAGGGATCGGTTTACGCCTGACTCTAA 608 Query 714 AACGTATAGCATATTGCTTGAGGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 773 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 609 AACCTATAGCATATTGCTTGAAGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 668 Query 774 GGTCTTCCGGGAAATGATTGATGCGGGTTGTCATCCGGATATAGTGACGTATAGTATAAT 833 ||| || ||||||||| |||||||||||| || ||||||||||||||| ||||||||||| Sbjct 669 GGTTTTTCGGGAAATGGTTGATGCGGGTTCTCTTCCGGATATAGTGACCTATAGTATAAT 728 Query 834 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 788 Query 894 GGATCCAAGCATTTGCAAGCCGACCACTTTTATCTATAGTGTGCTTGTACATACTTATGG 953 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 789 GGATCCAAGCATTTGCAAGCCGACAACTTTTATCTATAGTGTGCTTGTACATACTTATGG 848 Query 954 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACTTTCCTCGAGATGGAAAGAAGTGGAAT 1013 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 849 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACGTTCCTCGAGATGGAAAGAAGTGGAAT 908 Query 1014 GAAAGCCGATGTAGCAGTTTTCAATTCATTGATCGGTGCATTTTGCAAAGCAAATAGGAT 1073 ||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 909 GAAGGCCGATGTAGCGGTTTTCAATTCATTGATTGGTGCATTTTGCAAAACAAATAGGAT 968 Query 1074 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1028 Query 1134 GTCATGTAACATCATTCTACGCCATCTAATAGAACGAGGGGAGAAAGACGAAGCTTTTGA 1193 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | | Sbjct 1029 GTCATGTAACATTATTCTACGCCATCTAATAGATCGAGGGGAGAAAGACGAAGCTTATAA 1088 Query 1194 TGTCTTTAGGAAGATGATTAAAGTGTGTGAACCAGATGCAGACACTTACACGATGGTGAT 1253 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| Sbjct 1089 TGTCTTTAGGAAGATGATTAAAGTGTGCGAACCAGATGCAGACACATACACTATGATGAT 1148 Query 1254 CAAGATGTTTTGTGAAAAGAAAGAGATGGAGACAGCGGATAAAGTGTGGAAATACATGAG 1313 |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1149 AAAGATGTTTTGTGAGAAGAAAGAGATGGAGACCGCGGATAAAGTGTGGAAGTACATGAG 1208 Query 1314 GAAGAAAGGGGTGTTCCCTAGTATGCATACATTCTCGGTTCTTATTAATGGGTTGTGCGA 1373 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| Sbjct 1209 GAAGAAAGGGGTGTTCCCTAGTATGCACACATTCTCAGTTCTTATTAATGGGTTGGGCGA 1268 Query 1374 GGAGCGTACCACTCAGAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1433 ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 GGAGCCTAACACTCAAAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1328 Query 1434 ACCATCGGGTGTAACGTTTGGTAGATTAAGACAGCTGCTTATCAAAGAAGAGAGAGAAGA 1493 ||||||||||| || |||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1329 ACCATCGGGTGCGACATTTGGTAGATTAAGACAGCTGCTTCTCAAAGAAGATAGAGAAGA 1388 Query 1494 TGTGCTCAAGTTCCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCGTTGTGTGATTG 1553 |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1389 TGTGCTTAAGTTTCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCTTTGTGTGATTG 1448 Query 1554 A 1554 | Sbjct 1449 A 1449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58201894360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5