BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77360.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476900 jgi|Araly1|476900|fgenesh2_kg.2__2030__AT1G77360.1 2268 0.0
> Ahg476900 jgi|Araly1|476900|fgenesh2_kg.2__2030__AT1G77360.1
Length=1449
Score = 2268 bits (1228), Expect = 0.0
Identities = 1370/1441 (95%), Gaps = 0/1441 (0%)
Strand=Plus/Plus
Query 114 GATCAGAATTATCAATCGTCAATCCAGATTCTGCTGTAAGAGTTTTCTGTCTGCGAGGCT 173
|||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 9 GATCAGAATTCTCAATCGTCAATCCAGATTGTGTTCTAAGAGTTTTCTGTCTGCGAGGCT 68
Query 174 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCGGATGTGGCGAAGAACATATCTAAAGT 233
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 69 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCAGATGTGGCCAAGAACATATCTAAAGT 128
Query 234 ATTGATGTCTTCTCCGCAATTGGTGCTTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 293
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 129 ATTGATGTCTTCTCCACAACTGGTGATTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 188
Query 294 TTCACAAGAAGTTGTAGAAGATGTTTTAAATAGATTCAGGAATGCTGGTTTGTTGACATA 353
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 189 TTCACCAGAAGTTGTAGAAGATGTTTTATATAGATTCAGGAATGCTGGTTTGTTGGCATA 248
Query 354 CAGGTTCTTCCAATGGTCTGAGAAGCAACGGCATTACGAGCATAGTGTTCGTGCGTACCA 413
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 249 CAGGTTCTTCCAATGGTCTGAGAAGCAACGTCATTACGAGCATAGTGTTCGTGCCTACCA 308
Query 414 CATGATGATTGAGTCTACGGCGAAGATAAGGCAGTACAAGCTCATGTGGGATCTTATCAA 473
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 309 CATGATGATTGAGTCTACGGCAAAGATTAGGCAGTACAAGCTCATGTGGGATCTCATCAA 368
Query 474 TGCAATGAGGAAGAAGAAGATGCTAAATGTAGAGACTTTTTGTATCGTGATGAGGAAGTA 533
|||||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||
Sbjct 369 TGCAATGAGGAAGAAGGAGATGCTAAACGTCGAGACTTTTTGTATCGTAATGAGGAAGTA 428
Query 534 TGCGAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 593
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGCCAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 488
Query 594 TTTGCCGCCGAATCTTGTGGCGTTCAACGGGTTGTTGAGTGCGTTGTGTAAATCCAAGAA 653
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 TTTACCGCCAAATCTTGTGGCGTTCAACGGGTTGCTGAGTGCGTTGTGTAAATCCAAGAA 548
Query 654 TGTGAGGAAAGCACAGGAAGTTTTCGAAAATATGAGGGATCGCTTTACGCCTGACTCCAA 713
|||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| ||
Sbjct 549 TGTGAGGAAATCACAGGAAATTTTCGAGAATATGAGGGATCGGTTTACGCCTGACTCTAA 608
Query 714 AACGTATAGCATATTGCTTGAGGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 773
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 AACCTATAGCATATTGCTTGAAGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 668
Query 774 GGTCTTCCGGGAAATGATTGATGCGGGTTGTCATCCGGATATAGTGACGTATAGTATAAT 833
||| || ||||||||| |||||||||||| || ||||||||||||||| |||||||||||
Sbjct 669 GGTTTTTCGGGAAATGGTTGATGCGGGTTCTCTTCCGGATATAGTGACCTATAGTATAAT 728
Query 834 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 788
Query 894 GGATCCAAGCATTTGCAAGCCGACCACTTTTATCTATAGTGTGCTTGTACATACTTATGG 953
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 GGATCCAAGCATTTGCAAGCCGACAACTTTTATCTATAGTGTGCTTGTACATACTTATGG 848
Query 954 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACTTTCCTCGAGATGGAAAGAAGTGGAAT 1013
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 849 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACGTTCCTCGAGATGGAAAGAAGTGGAAT 908
Query 1014 GAAAGCCGATGTAGCAGTTTTCAATTCATTGATCGGTGCATTTTGCAAAGCAAATAGGAT 1073
||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 909 GAAGGCCGATGTAGCGGTTTTCAATTCATTGATTGGTGCATTTTGCAAAACAAATAGGAT 968
Query 1074 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1028
Query 1134 GTCATGTAACATCATTCTACGCCATCTAATAGAACGAGGGGAGAAAGACGAAGCTTTTGA 1193
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1029 GTCATGTAACATTATTCTACGCCATCTAATAGATCGAGGGGAGAAAGACGAAGCTTATAA 1088
Query 1194 TGTCTTTAGGAAGATGATTAAAGTGTGTGAACCAGATGCAGACACTTACACGATGGTGAT 1253
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||
Sbjct 1089 TGTCTTTAGGAAGATGATTAAAGTGTGCGAACCAGATGCAGACACATACACTATGATGAT 1148
Query 1254 CAAGATGTTTTGTGAAAAGAAAGAGATGGAGACAGCGGATAAAGTGTGGAAATACATGAG 1313
|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1149 AAAGATGTTTTGTGAGAAGAAAGAGATGGAGACCGCGGATAAAGTGTGGAAGTACATGAG 1208
Query 1314 GAAGAAAGGGGTGTTCCCTAGTATGCATACATTCTCGGTTCTTATTAATGGGTTGTGCGA 1373
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1209 GAAGAAAGGGGTGTTCCCTAGTATGCACACATTCTCAGTTCTTATTAATGGGTTGGGCGA 1268
Query 1374 GGAGCGTACCACTCAGAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1433
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GGAGCCTAACACTCAAAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1328
Query 1434 ACCATCGGGTGTAACGTTTGGTAGATTAAGACAGCTGCTTATCAAAGAAGAGAGAGAAGA 1493
||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1329 ACCATCGGGTGCGACATTTGGTAGATTAAGACAGCTGCTTCTCAAAGAAGATAGAGAAGA 1388
Query 1494 TGTGCTCAAGTTCCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCGTTGTGTGATTG 1553
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1389 TGTGCTTAAGTTTCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCTTTGTGTGATTG 1448
Query 1554 A 1554
|
Sbjct 1449 A 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5