BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77370.1

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927139 jgi|Araly1|927139|scaffold_202700.1                        691    0.0  


> Ahg927139 jgi|Araly1|927139|scaffold_202700.1
Length=434

 Score =  691 bits (374),  Expect = 0.0
 Identities = 412/430 (96%), Gaps = 3/430 (1%)
 Strand=Plus/Plus

Query  59   GTGATCGAAACGGCGATGGTTGACCAGAGTCCTCGCCGTGTTGTCGTGGCGGCGCTCCTA  118
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  6    GTGATCGAAACGGCGATGGTTGACCAGAGTCCTCGCCGTGTTGCCGTGGCGGCGCTCCTA  65

Query  119  TTGTTTGTGGTTCTGTGCGATCTTTCGAATTCTGCGGGAGCTGCGAATTCTGTGTCAGCT  178
            ||  | |||||| |  ||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct  66   TTACTAGTGGTTATCAGCGATCTGTCAAATTCTGCGGGAGCTGCGAATTCGGTGTCGGCT  125

Query  179  TTCGTTCAGAACGCCATCTTGTCCAACAAGATTGTCATCTTCTCCAAATCCTACTGCCCG  238
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  126  TTCGTTCAGAACGCCATCTTGTCCAACAAGATCGTCATCTTCTCCAAATCCTACTGCCCG  185

Query  239  TATTGTTTGCGGTCGAAACGTATATTCAGCCAACTTAAGGAAGAGCCATTTGTTGTGGAG  298
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  186  TATTGCTTGCGGTCGAAACGTATCTTCAGCCAACTTAAGGAAGAGCCATTTGTTGTGGAG  245

Query  299  CTTGATCAGAGAGAGGACGGAGATCAAATCCAGTATGAGCTTTTAGAATTCGTTGGTCGT  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  CTTGATCAGAGAGAGGACGGAGATCAAATCCAGTATGAGCTTTTAGAATTCGTTGGTCGT  305

Query  359  CGTACTGTCCCGCAAGTTTTTGTTAACGGCAAGCATATTGGTGGATCAGATGATCTTGGA  418
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  306  CGTACTGTCCCGCAAGTTTTTGTAAACGGCAAGCATATTGGTGGATCAGATGATCTTGGA  365

Query  419  GCTGCTTTGGAGAGTGGTCAGTTGCAAAAGCTTCTTGCTGCAAGTTGA-TATTTGAGGAC  477
            |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct  366  GCTGCTTTGGAGAGTGGTCAGTTGCAAAAGCTTCTTGCTGCAAGTTGACT-TTT-AGGAC  423

Query  478  CTCGAATGTG  487
            ||||||||||
Sbjct  424  CTCGAATGTG  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22683135615


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5