BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77380.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476902 jgi|Araly1|476902|fgenesh2_kg.2__2032__AT1G77380.1 2763 0.0
> Ahg476902 jgi|Araly1|476902|fgenesh2_kg.2__2032__AT1G77380.1
Length=1825
Score = 2763 bits (1496), Expect = 0.0
Identities = 1748/1863 (94%), Gaps = 43/1863 (2%)
Strand=Plus/Plus
Query 8 AGACAGTTCTTTAACAAAGTCATTAAACATTTCCCTTACCTTCTAAAGATCAACTCTTTC 67
||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AGACAGTTCTTCAACAAAGGCATTAAACATTTCCCTTACCTTCTAAAGGCCAACTCTTTC 60
Query 68 AAACACTTACTCTGCATGTAACTTCATAGATTGAACGAAGAACCaaaaaaacagagcaaa 127
||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct 61 AAACACTTACTTTGCATGTAACTTC----A-T------------AAAAAAACAGAGCAAA 103
Query 128 acaaacaaaagatggttcaaaaccaccaaacaGTTCTCGCCGTCGATATGCCACAAACCG 187
| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 104 AAAAACAAAAAATGGTTCAACTCCACCAAACAGTTCTCGCCGTCGATATGCCACAAACCG 163
Query 188 GCGGCTCCAAGTACTTGGACGACGACGGGAAAA-ACAAAAGAACTGGGAGTGTTTGGACG 246
||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 164 GCGGCTCTAAGTACTTGGACGACGAC-GGAAAAGTCAAAAGAACTGGGAGTGTTTGGACG 222
Query 247 GCGAGTGCACACATAATAACGGCAGTGATAGGTTCGGGAGTTTTGTCACTAGCGTGGGCT 306
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 223 GCGAGTGCACACATAATAACGGCGGTGATAGGTTCGGGAGTTTTGTCACTGGCGTGGGCT 282
Query 307 ACGGCGCAGCTAGGTTGGCTCGCCGGACCGGTGGTGATGTTGCTCTTCTCTGCCGTCACT 366
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 283 ACGGCGCAGCTAGGTTGGCTAGCCGGACCAGTGGTGATGTTGCTCTTCTCTGCAGTCACT 342
Query 367 TATTTCACTTCTTCTCTTCTTGCTGCTTGTTACCGCTCCGGCGACCCTATCTCCGGCAAG 426
||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 343 TATTTCACTTCTTCTCTTCTTGCGGCATGTTACCGCTCTGGCAACCCTATCTCCGGCAAG 402
Query 427 AGGAACTACACTTATATGGATGCTGTCCGATCAAATCTCGGTGGCGTGAAGGTGACGCTA 486
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 403 AGGAACTACACTTATATGGATGCTGTCCGATCTAATCTCGGTGGCGTGAAGGTGACGCTA 462
Query 487 TGTGGGATTGTTCAGTATCTTAATATCTTTGGTGTTGCTATTGGCTACACAATTGCTTCA 546
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 463 TGTGGGATTGTTCAGTATCTTAATATCTTTGGTGTTGCAATAGGCTACACAATTGCTTCA 522
Query 547 GCTATAAGCATGATGGCAATAAAGAGATCAAACTGTTTCCACAAGAGTGGAGGGAAAGAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GCTATAAGCATGATGGCAATAAAGAGATCAAACTGTTTCCACAAGAGTGGAGGGAAAGAT 582
Query 607 CCATGTCACATGAACAGTAATCCTTACATGATAGCTTTTGGATTAGTCCAGATTCTATTC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CCATGTCACATGAACAGTAATCCTTACATGATAGCTTTTGGATTAGTCCAGATTCTATTC 642
Query 667 TCTCAGATTCCAGATTTTGATCAACTTTGGTGGCTCTCAATCCTCGCCGCCGTTATGTCC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 643 TCTCAGATTCCAGATTTTGATCAACTTTGGTGGCTCTCAATCCTCGCCGCCGTAATGTCC 702
Query 727 TTCACTTATTCCTCAGCCGGTCTCGCCCTCGGCATAGCCCAAGTTGTCGTTAATGGGAAG 786
|||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 703 TTCACTTATTCCTCTGCCGGTCTCGCCCTAGGCATAGCCCAAGTTGTTGTAAATGGGAAG 762
Query 787 GTGAAGGGAAGTCTCACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTGAAGGGAAGTCTCACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGG 822
Query 847 AGGACCTTTCAAGCTCTTGGAGACATTGCTTTTGCTTACTCTTACTCCATTATCCTCATC 906
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 823 AGAACCTTCCAAGCTCTTGGAGACATTGCTTTTGCTTACTCTTACTCCATCATTCTCATC 882
Query 907 GAGATTCAGGACACAGTGAAGTCACCACCATCAGAAGAGAAGACGATGAAGAAGGCAACA 966
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 883 GAGATTCAGGACACAGTGAAGTCACCACCATCAGAAGAAAAAACGATGAAGAAGCCAACA 942
Query 967 CTTGTGAGCGTCAGTGTAACGACTATGTTCTATATGTTGTGTGGATGTATGGGATATGCA 1026
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 943 CTTGTGAGCGTCAGTGTAACGACTATGTTCTACATGTTGTGTGGATGTATGGGTTATGCA 1002
Query 1027 GCCTTTGGAGACTTGTCTCCGGGAAATCTCTTAACCGGTTTCGGGTTTTATAATCCTTAT 1086
|||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1003 GCCTTTGGAGACCTATCTCCGGGAAATCTCTTAACCGGTTTTGGGTTTTATAATCCTTAT 1062
Query 1087 TGGCTTCTTGACATTGCAAATGCAGCCATTGTGATTCACCTTATTGGTGCATACCAAGTC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TGGCTTCTTGACATTGCAAATGCAGCCATTGTGATTCACCTTATTGGTGCATACCAAGTC 1122
Query 1147 TATTGCCAACCTCTGTTTGCTTTCATCGAGAAGCAAGCTTCCATTCAATTCCCTGATAGT 1206
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 TATTGCCAACCTCTGTTTGCTTTCATCGAGAAGCAAGCTTCCATTCGATTCCCTGATAGT 1182
Query 1207 GAGTTCATTGCAAAAGATATCAAAATTCCAATTCCTGGTTTCAAGCCTCTCCGCTTGAAT 1266
||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 1183 GAGTTCATTGCAAGAGATATCAAAATTCCAATTCCAGGTTTCAAGCATCTCCACTTGAAT 1242
Query 1267 GTCTTCAGGTTGATATGGAGGACAGTGTTTGTGATCATAACGACAGTTATCTCAATGCTT 1326
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GTCTTCAGGTTGATATGGGGGACAGTGTTTGTGATCATAACGACAGTTATCTCAATGCTT 1302
Query 1327 CTTCCGTTTTTCAACGACGTTGTGGGTCTGCTCGGGGCACTAGGGTTTTGGCCATTGACG 1386
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1303 CTTCCGTTTTTCAACGACGTTGTGGGTCTGCTCGGGGCACTCGGGTTTTGGCCATTGACA 1362
Query 1387 GTGTATTTTCCAGTGGAAATGTACATCGCGCAGAAGAAGATACCTAGATGGAGCACCAGA 1446
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1363 GTGTATTTTCCAGTGGAAATGTACATTGCGCAGAAGAAGATACCTAGATGGAGCACCAGA 1422
Query 1447 TGGGTTTGCCTTCAAGTCTTCAGCTTAGGGTGTCTAGTAGTTAGCATTGCTGCAGCTGCA 1506
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1423 TGGGTTTGCCTTCAAGTCTTCAGCTCAGGGTGTTTAGTAATTAGCATTGCTGCAGCTGCA 1482
Query 1507 GGGTCCATAGCTGGAGTACTTCTTGATCTAAAGTCCTACAAGCCATTTCGAAGCGAATAC 1566
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GGGTCCATAGCTGGGGTACTTCTTGATCTAAAGTCCTACAAGCCATTTCGAAGCGAATAC 1542
Query 1567 TGATCAACTTGA-A-TAGTAGCCAATTCAAAGCGATGACTAAGTCAGTTTTAAACACAAT 1624
|||||||||||| | | | |||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1543 TGATCAACTTGAGACTT-T-GCCATTTCGAAGCGATGACTGAGTCAGTTTTAAACACAAA 1600
Query 1625 GGATTTATCAAGAACAGTCAAGAGAACCAA-GAACCATGAATTTGGGAATTTTGATCAGC 1683
|| |||||| ||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1601 CAATATATCAAAAACGGTCAAGAGAACCAATGA-CAATGAATTTGGGAATTTTGATCAGC 1659
Query 1684 tttttttt-ATATAGATAGAAGCAATAATGCTGTTAGTTCTTCTCTATAATCTTCTCTGT 1742
|| ||||| ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1660 TTGTTTTTGATATAGATAAAAGCAATAATGCTGTTAGTTCTTCTCT------------GT 1707
Query 1743 ACCCTGAAGGCAAGAATTGTAGTCCTAATGAGTAAATCTTCGATTAATGACAGAGTCATG 1802
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1708 ACCCTGAAGGCAAGAATTGTAGTCCTAATGAGTAAATCTTCGATTAATTT-----TCATG 1762
Query 1803 TGCTGCAACAGAATCATGAACTAGCACCATAATAGTATATTACCATTGTGGTAAAATTTC 1862
|||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 1763 TGCTGCAAAAGAATCATGAACTGGCAGCATAATAGTATATTACCATTGTGGTAAAATTGC 1822
Query 1863 AAT 1865
|||
Sbjct 1823 AAT 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5