BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77390.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476903 jgi|Araly1|476903|fgenesh2_kg.2__2033__AT1G77390.1 2074 0.0
> Ahg476903 jgi|Araly1|476903|fgenesh2_kg.2__2033__AT1G77390.1
Length=1428
Score = 2074 bits (1123), Expect = 0.0
Identities = 1326/1422 (93%), Gaps = 22/1422 (2%)
Strand=Plus/Plus
Query 64 tctcactctcGCAGAAGAGAAACCCTAAATCTCACCGGAAAACGAGAACGCCGAGCCTGA 123
|||| |||| |||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 16 TCTCTCTCT-GCAGAACAGAAACCCTAAATCTCACCGGAAAACGATAACGCCGAGCC-G- 72
Query 124 GATATTTTCGATTGCTTCATCAACAATGTCTTCTTCGTC--GA--G-A-AATCTATCTCA 177
|| | |||| ||| |||| |||||||||||||||||||| | | | || ||| ||||
Sbjct 73 GAGA-TTTCCATTTCTTCTTCAACAATGTCTTCTTCGTCTTCATCGAAGAACCTACCTCA 131
Query 178 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 191
Query 238 AAACCGTCGTGCTCCCCTCGGCGACATCACAAATCAGAAGAATGGATCTAGAAATCCTTC 297
||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct 192 AAACCGTCGTGTTCCTCTCGGCGACATCACAAATCAGAAGACTGGATCAAGAAATTCTTC 251
Query 298 ACCGTCGTCTACTCTGGTGAATTGTTCAAATAAGATCGGCCAATCTAAGAAAGCACCAAA 357
|||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||
Sbjct 252 TTCGTCGTCTACTCTGGTTCATTGTTCGAATAAGATCTCCCAATCGAAGAAAGCATCAAA 311
Query 358 ACCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTCCGGTTTACCTCCCAAGCC 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 312 GCCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTGCGGTTTACCTCCCAAGTC 371
Query 418 AAATGCGAAATCAAACATAATCGTTCCTTACGAAGACACCGAATTG-CTCCAAAGCGATG 476
||||||||| |||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 372 AAATGCGAATTCAAACATAATCGTTCCTTACGAAGACACCGAATTGCCT-CAAATCGATG 430
Query 477 ATAGTCTTCTATGTTCTTCACCTGCATTATCCT-TGGATGCCTCTCCTACTCAATCTGAC 535
|||||||||||| ||| ||||||| ||||| || | ||||||||||||||||| || |||
Sbjct 431 ATAGTCTTCTATCTTCATCACCTGGATTAT-CTGTTGATGCCTCTCCTACTCACTCAGAC 489
Query 536 CCGTCAATTTCCACTCATGACTCTTTGACGAACCACGTTGTAGATTACATGGTCGAGAGC 595
|||||||||||||||||||||||| | | || |||| ||||||| ||||||||||||||
Sbjct 490 CCGTCAATTTCCACTCATGACTCTCTCAAGAGCCACATTGTAGAACACATGGTCGAGAGC 549
Query 596 ACTACtgatgatggaaatgatgatgatgatgatgaGATTGTTAACATTGATAGTGACTTG 655
| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 550 AGTACTGATGATGG--A--A--ATGATGATGATGAGATTGTTAACATTGATAGTGACTTG 603
Query 656 ATGGATCCACAGCTTTGTGCTTCTTTTGCTTGTGATATCTACGAGCATTTGCGTGTATCT 715
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 604 ATGGATCCACAGCTTTGTGCTTCCTTTGCTTGTGATATCTACGAGCATTTGCGTGCATCT 663
Query 716 GAGGTGAACAAAAGACCGGCTCTAGATTACATGGAAAGAACTCAGTCAAGCATCAATGCT 775
||||| || ||||||||||| ||||||||||||||||||| ||||| || ||||||||||
Sbjct 664 GAGGTAAAGAAAAGACCGGCCCTAGATTACATGGAAAGAATTCAGTTAAACATCAATGCT 723
Query 776 AGCATGCGTTCTATACTGATTGACTGGCTTGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 835
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 724 AGCATGCGTTCTATACTCATTGACTGGCTCGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 783
Query 836 CCCGAGACGTTGTATTTGGCAGTAAACTACGTTGATCGGTATCTTACAGGAAATGCAATC 895
||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||
Sbjct 784 CCCGAGACGTTGTATTTGGCAGTGAACTATGTAGATCGGTATCTTACGGGCAATGCAATT 843
Query 896 AACAAGCAAAATCTGCAGCTACTTGGTGTTACCTGCATGATGATAGCAGCAAAATATGAA 955
|||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 844 AACAAGCAAAATCTGCAGTTACTTGGTGTTGCCTGCATGATGATCGCAGCAAAATATGAA 903
Query 956 GAAGTGTGTGTGCCGCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 1015
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GAAGTGTGTGTGCCCCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 963
Query 1016 AATGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1075
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AACGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1023
Query 1076 CCAACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1135
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CCGACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1083
Query 1136 CCATCACTGCTGTCTGAGTGTCTGGCCTGCTATCTCACCGAATTATCGCTGTTAGATTAC 1195
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 CCATCACTGCTGTCTGAATGTCTGGCCTGCTATCTCACTGAATTATCGCTGTTAGATTAC 1143
Query 1196 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1203
Query 1256 ACT-CTACACCCTTCAAGAAAACCATGGAATGCTACGCTAGAGCATTACACATCGTACAG 1314
| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1204 A-TACTACACCCTTCAAGAAAACCATGGAACGCTACACTAGAGCATTACACATCGTACAG 1262
Query 1315 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACTCTC 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1263 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACCCTC 1322
Query 1375 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGCAGCAAA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1323 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGTAGCAAA 1382
Query 1435 GAAGCTTTGTCCCACGTCACTACCGCAAGAGCTTTTCCTCTG 1476
||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1383 GAAGCTTTGCCCCACATCACTACCGCAAGAGCTCTTCCTCTG 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5