BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77400.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476904 jgi|Araly1|476904|fgenesh2_kg.2__2034__AT1G77400.1 1424 0.0
> Ahg476904 jgi|Araly1|476904|fgenesh2_kg.2__2034__AT1G77400.1
Length=989
Score = 1424 bits (771), Expect = 0.0
Identities = 922/990 (93%), Gaps = 29/990 (3%)
Strand=Plus/Plus
Query 9 CTAAAGTCAtctctcttctatctatctctctgtctcttctTGAGAGCTAAAAAGAACATC 68
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 1 CTAAAGTCATCTCTCTTCTATCTATCTATCTGTCTCTTCTTGAGAGCTAAAAA-AAAATC 59
Query 69 AAATGGCCATTATCGACGTTGATGATTCATTCAAGAGACCAGGAACTATACCTTTTAGCT 128
||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 AAATGGCCATTGTCCACGTTGATGATTCATTCAAGAGACCTGGAACTATACCTTTTAGCT 119
Query 129 GGGAGATCCGACCCGGTGTACCTAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 188
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 GGGAGATCCGACCCGGTGTACCCAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 179
Query 189 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGTTTTAAACCATTGTCTCACTCTCAGCCGC 248
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 180 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGGTTAAAACCTTTGTCTCACTCTCAGCCGC 239
Query 249 TTCTCCCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAATTCCAAAAGCCGTC 308
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TTCTACCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAACTCCAAAAGCCGTC 299
Query 309 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCACCAC 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCGCCAC 359
Query 369 GAACACCGTCGTCGCTTT-CTGGATTTTACTCTCCGGGACCTTCTTTCCGATCATCGCCG 427
||||||||||||| ||| ||||||| ||||||||||| ||||||||| |||| || |||
Sbjct 360 CAACACCGTCGTCG-TTTGCTGGATTCTACTCTCCGGGTCCTTCTTTCAGATCCTCTCCG 418
Query 428 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGAATCCGAA 487
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 419 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGGATCTGAA 478
Query 488 CCAGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAAGTTT 547
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 CCCGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAGGTTT 538
Query 548 AGGTTGAGGAA-AGTTAAGAGCGGTGGTAGTCGGAG-AAAATCCGGGTCGAGATCGGAGA 605
||||||||||| | | |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 539 AGGTTGAGGAAGAAT-AAGAGCGGTGGTAGTCGGAGGAAAA-CCGGGTCGAGATCGGAGA 596
Query 606 ATGATTATTATTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCAAGCCGTAGAT 665
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 597 ATGATTATTACTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCTAGCCGGAGAT 656
Query 666 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTTTCTTCTCTCCGATTCTCGCCAC 725
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 657 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTCTCTTCCCTCCGATTCTCGCCAC 716
Query 726 GATTCGCCAACGAAGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTTTCAATGAA 785
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 717 GAATCGCCAACGAGGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTT-----G-- 769
Query 786 ATGGCTCGCGATCGGTTCTTTAGCCATCCGAACCAACGGAAGCCTCTTGAATCGCGCAAA 845
| ||||||||||||||||||||||||||||| | | | ||||||||||| ||||
Sbjct 770 --G-CTCGCGATCGGTTCTTTAGCCATCCGAAC-A--G----CTTCTTGAATCGCTCAAA 819
Query 846 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGATTTTTCAAAAGTTTAGGGTCCTATATC 905
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 820 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGAGTTTTCAAAAGTTTAGGGTCCTATATC 879
Query 906 TAATGTGCTTTAGAGTTTTCACATCTGTGTAATATAAATTTGTGGATCTGTGGATGTCTA 965
|||||| ||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||
Sbjct 880 TAATGTCCTT-AGAGTTTTCACATCTTTGTAGTATAA-TTTGTGGAA-TGTGGATGTCTA 936
Query 966 AAGACAATTCAC-ATTTTGAA-TTTTGAAG 993
|||||||| ||| |||||||| |||| |||
Sbjct 937 AAGACAATCCACCATTTTGAAGTTTTAAAG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5