BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77405.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927143 jgi|Araly1|927143|scaffold_202704.1 2169 0.0
> Ahg927143 jgi|Araly1|927143|scaffold_202704.1
Length=1421
Score = 2169 bits (1174), Expect = 0.0
Identities = 1313/1381 (95%), Gaps = 5/1381 (0%)
Strand=Plus/Plus
Query 1 ATGAAACCGTCGCAACCGCTATGTAACCGCATTGTTGATCAGCTTATTACTGCCATGATT 60
||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||
Sbjct 22 ATGAAACCGTCGCAACCGCTATGTAACCGCATTATTGATCAGCTTATTGCCGCAATGATC 81
Query 61 CAGAACCGTCCATTCGACGCCGTTCTCGCTTCTTCAACGGTGGCGAAACCATGGACTCAG 120
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 82 CAGAACCGTCCATTCGACGCCGTTCTCGCTTCTTCAACGGTCGCGAATCCATGGACTCAG 141
Query 121 CAGCTCGTCTCCGATGTCCTCCATTCTATCCCCAGATTCTTCTTTATCTCCCCACGATCC 180
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 142 CAGCTCGTCTCCGATGTCCTCCGCTCTATCCCCAGATTCTTCTTCATTTCCCCACGATCC 201
Query 181 ATCGGTCGGCAAAAGGGTTTTCGTCACCGTTCACCGTTAAAGCAGAGAAACCTCAGTGAT 240
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 202 ATCGGTCGGCAAAAGGGTTTTCGTCACCGGTCGCCGTTAAAGCAGAGAAACCTCAGTGAT 261
Query 241 GAATCACAACGACGTCGTTCTGAAGTTCTAGTTCTAGGTCCCGGTGCGTATATGGATCCT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 262 GAATCACAACGACGTCGTTCTGAAGTCCTAGTTCTAGGTCCCGGTGCGTATATAGATCCT 321
Query 301 AAGAAAGTCTCTATCGGGTTGCAGAAAGCATTGGAGTTCTTCTTTTGGATCGAAACCCAC 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 AAGAAAGTCTCTCTCGGGTTGCAGAAAGCATTGGAGTTCTTCTTTTGGATCGAGACCCAT 381
Query 361 TTCGGGTTTGATCATAATGAGATCACTTGCAGAGATATGGCTTGTCTATTGGCCAAAGGC 420
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTCGGATTTGGTCATAATGAGATCACTTGCAGAGATATGGCTTGTCTATTGGCCAAAGGC 441
Query 421 AATGACTTTAAGGGTCTCTGGGATTTTCTCCGGCAAGTCTCTAGAAGAGAGAACGGTAAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 442 AATGACTTTAAGGGTCTCTGGGATTTTCTCCGGCAAGTCTCTAGAAGAGAGAACGGCAAA 501
Query 481 AATGTGGTCACAACAGCGTCTATAACCTGTTTGATGAAATGCCTAGGAGAAGAAGGTTTT 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 AATGTGGTCACAACAGCGTCTATAACGTGTTTGATGAAATGCCTAGGAGAAGAAGGTTTT 561
Query 541 GTGAAAGAGGCATTAGCTACATTTTATAGGATGAAGGAATATCACTGCAAACCTGATGTT 600
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 562 GTTAAAGAGGCATTAGCTACTTTTTATAGGATGAAGGAATATCACTGCAAACCTGATGTT 621
Query 601 TATGCTTACAATACAATTATCAATGCCCTTTGCCGTGTGGGGAATTTTAAAAAAGCTCGG 660
|||||||||||||||||||||||||| || ||||| ||||||||||| |||||||| |
Sbjct 622 TATGCTTACAATACAATTATCAATGCTCTCTGCCGAGTGGGGAATTTCAAAAAAGCGAGA 681
Query 661 TTTCTATTGGATCAGATGCAATTACCGGGTTTTCGGTACCCACCGGATACCTATACTTAC 720
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 682 TTTCTGTTGGATCAGATGCAATTACCCGGTTTTCGATACCCACCGGATACCTATACTTAC 741
Query 721 ACCATTTTGATTAGCTCCTACTGTAGATATGGGATGCAAACCGGATGCAGAAAGGCGATA 780
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 742 ACCATTTTAATTAGCTCGTATTGTAGATATGGGATGCAAACCGGATGCAGAAAGGCCATA 801
Query 781 AGGAGGAGAATGTGGGAGGCTAATCGAATGTTTAGGGAAATGCTGTTCAGAGGGTTTGTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AGGAGGAGAATGTGGGAGGCTAATCGAATGTTTAGGGAAATGCTGTTCAGAGGGTTTGTA 861
Query 841 CCCGATGTGGTGACTTATAATTGCTTGATCGATGGATGTTGCAAAACGAATCGGATTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CCCGATGTGGTGACTTATAATTGCTTGATCGATGGATGTTGCAAAACGAATCGGATTGGT 921
Query 901 CGGGCTCTGGAGCTGTTTGAAGATATGAAGACAAAAGGGTGTGTACCGAACCAAGTGACT 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 922 CGGGCTCTTGAGCTGTTTGAAGATATGAAGACAAAAGGGTGTGTACCGAACCAGGTGACT 981
Query 961 TATAATTCTTTCATAAGGTATTATAGTGTTACTAATGAGATAGAAGGTGCAATAGAGATG 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 982 TATAATTCTTTCATAAGGTATTATAGTGTTACCAATGAGATAGAAGGTGCAATCGAGATG 1041
Query 1021 ATGAGGACAATGAAGAAGTTGGGTCATGGTGTACCTGGTTCGAGCACGTACACGCCGCTA 1080
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1042 ATGAGGACAATGAAGAAGATGGGTCATGGTGTACCTGGTTCAAGCACGTACACACCGCTA 1101
Query 1081 ATACACGCTCTTGTTGAGACCAGGAGAGCGGCTGAGGCTAGGGATTTGGTGGTGGAGATG 1140
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1102 ATACACGCTCTTGTTGAGACCAGAAGAGCGGCTGAGGCTCGGGATTTGGTGGTGGAGATG 1161
Query 1141 GTGGAGGCTGGGTTGGTTCCGAGAGAGTATACATATAAGTTGGTGTGTGATGCTCTGAGC 1200
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1162 GTGGATGCTGGGTTGGTTCCGAGAGAGTATACATATAAGTTGGTGTGGGATGCTCTGAGC 1221
Query 1201 TCAGAAGGACTGGCAAGCACACTTGATGAAGAGCTGCATAAGAGAATGAGGGAAGGAATA 1260
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TCAGAAGGAATGGCGGGTACACTTGATGAAGAGCTGCATAAGAGAATGAGGGAAGGAATA 1281
Query 1261 CAACAGAGATATAGCA-GAGTCATGAAGATCAAACCGACCATGGCTCGAAAAGAGGTTGT 1319
||||||||||||| || |||||||||||||||||||| |||||||||||| || |||||
Sbjct 1282 CAACAGAGATATA-CAAGAGTCATGAAGATCAAACCGGTCATGGCTCGAAAGGACGTTGT 1340
Query 1320 TCGAAAAT---ATTTTCACAAGATTGACGGGAATCAAAATTTTGCAATGGAGGAAATCTG 1376
| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1341 CCAAAAATCGGATTTTCACGAGATTGACATGAATCAAAATTATGCAATGGAGGAAATCTG 1400
Query 1377 A 1377
|
Sbjct 1401 A 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5