BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77420.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476907 jgi|Araly1|476907|fgenesh2_kg.2__2037__AT1G77420.1 2080 0.0
> Ahg476907 jgi|Araly1|476907|fgenesh2_kg.2__2037__AT1G77420.1
Length=1497
Score = 2080 bits (1126), Expect = 0.0
Identities = 1347/1447 (93%), Gaps = 42/1447 (3%)
Strand=Plus/Plus
Query 126 TTGAATCTCCAGAATCCATGGATCGTGCTTTAAC-TCCGCGTTTTGATACTCCAGCTACT 184
|||||||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct 84 TTGAATCTCCAGAATCCATGGATCGTGCTTTAACTTCC-CGTTTTG-------A--TACT 133
Query 185 CTCTCCCCTTTCCGATACCGATATGGGAGCTCTCTGGCCATCACTCGACGATTCGCGCCG 244
|||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 134 CTCTACCCTTTCCGATACCGACATAGGAGCTCTCTGACCATCACTCGACGATTCGCGCCG 193
Query 245 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATT 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATC 253
Query 305 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACTAGCCCGTTCCGCTTTTGTTGAC 364
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 254 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACGAGCCCGTTCCGCATTTGTTGAC 313
Query 365 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGAGTGGGATCAGAACAGAG 424
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 314 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGATTGGAATCAGAACAGAG 373
Query 425 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGATATTTTCTGCAAGAGTTGGTTGCCGAAA 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGAAATTTTCTGCAAGAGTTGGTTGCCGAAA 433
Query 485 TCCGGCGACGAAATCAAAGCTGCTGTATGTTTCTGTCATGGCTATGGAAGCACTTGCACT 544
|||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 434 TCCGGCGAAGAAATCAAAGCTGCGGTGTGTTTCTGTCATGGCTATGGCAGCACTTGCACT 493
Query 545 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGGGTTTATGCTATA 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 494 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGAGTTTATGCTATA 553
Query 605 GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGAC 664
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 554 GACCATCCTGGTTTTGGCCTATCAGATGGTTTACATGGTCACATCCCAAGTTTTGATGAC 613
Query 665 TTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGATCGGAATTGAGAAAT 724
||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 614 TTAGCTGAGAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGACCTGAATTGAGAAAT 673
Query 725 TTGCCCCGGTTTTTGCTGGGACAGTCAATGGGAGGAGCAGTTGCCTTAAAAATTCATCTT 784
|||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 674 TTGCCCCGGTTTCTGCTCGGACAGTCAATGGGAGGAGCAGTTGCCTTGAAAATTCATCTG 733
Query 785 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGTCGCTCCAATGTGTAAGATTTCAGAA 844
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 734 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGCCGCTCCAATGTGTAAGATTTCAGAA 793
Query 845 GATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCC 904
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 794 GATGTAAAACCTCCTCCACTAGTCTTGAAGGCGTTAATCTTGATGTCGACACTATTTCCC 853
Query 905 AAAGCAAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCTGAGTAAA 964
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 854 AAAGCGAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCCGAGTAAA 913
Query 965 AGAAAATTGTGTGAGTACGATGTGATATGCTACGATGATCAAACACGTCTCAAAACTGCT 1024
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 914 AGAAAATTGTGTGAGTACGATGTGATTTGCTACGATGATCAAACACGTCTAAAAACTGCT 973
Query 1025 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCA 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCG 1033
Query 1085 CTGTTGATACTTCATGGAGACACTGATAAAGTCACAGATCCCACTGTGAGTAAATTCCTT 1144
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1034 CTGTTGATACTTCATGGAGACGCTGATAAAGTCACAGATCCCACTGTGAGCAAATTCCTT 1093
Query 1145 CACAAACATGCAGTCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1204
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CACGAGCATGCAATCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1153
Query 1205 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAATGACATCGTTGCTTGG 1264
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1154 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAACGACATAGTTGCTTGG 1213
Query 1265 CTCGATGCCCGCGTTGATCCCAAGTAAAGTGAGATCATCTCTCCACAAACCTATACTTAT 1324
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1214 CTCGATGCCCGCGTTGCTCCCAAGTAAAGTGAGATTATATCTCCACAAACCTATACTCAT 1273
Query 1325 TATTGTCTTCTGAATACTGTCGAGTCTCTGTGATTAAACATCCGGATAAGAAGAAAAAAT 1384
|||||||||||||| | |||||||||||| |||||||| ||| | | |
Sbjct 1274 TATTGTCTTCTGAAAAATGTCGAGTCTCTATGATTAAAGATC----T--G---------T 1318
Query 1385 AGATATGTGGCTTACAATGAATACACAACCTTAGCCGTTG-TT--T--GCTTAGCTAGTG 1439
| | |||||||||||||||||||||| ||| ||| || | ||||||||||||
Sbjct 1319 -G----G---CTTACAATGAATACACAACCTTGGCCCTTGCTTGCTTAGCTTAGCTAGTG 1370
Query 1440 CTTCTAGTGCTACATCAGCCGCATCTTTCGAAGTGTAGTTAGTATTGTTTGGGTGCACAT 1499
| |||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1371 CCTCTAAAGCTACATCAGCCGCATCTTTCAAACTGTAGTTAGTAGTGTTTGGGTGCACAT 1430
Query 1500 AAGTCAGGCTCAGAATCAAATTGATGACTGAT-CTC--ATTTGAACCATATTGCTCTGAC 1556
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct 1431 AAGTCAGGCTCAGAATCAAATTGATGACTGATTCTCTCATTTGAACCATATTGCTCTAAG 1490
Query 1557 AGATCCT 1563
|||||||
Sbjct 1491 AGATCCT 1497
Score = 87.9 bits (47), Expect = 2e-16
Identities = 77/90 (86%), Gaps = 7/90 (8%)
Strand=Plus/Plus
Query 3 TCGATCATCATTCTGGTAGTTGAAAACTTTgtcgtcgtcgtcgtcgtcgtcgtAGCACGT 62
||||| |||||||||||||||||| || | | | | | | | |||||||||||||||
Sbjct 1 TCGATTATCATTCTGGTAGTTGAAGAC--T-T-GAAGAC-T-G-AGTCGTCGTAGCACGT 53
Query 63 GTTGCACGTGAGAAATTTCCCGCACAAAAT 92
||||||||||||||||||||||||||||||
Sbjct 54 GTTGCACGTGAGAAATTTCCCGCACAAAAT 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5