BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77440.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927146 jgi|Araly1|927146|scaffold_202707.1 1103 0.0
Ahg912012 jgi|Araly1|912012|Al_scaffold_0001_2266 678 0.0
> Ahg927146 jgi|Araly1|927146|scaffold_202707.1
Length=655
Score = 1103 bits (597), Expect = 0.0
Identities = 633/651 (97%), Gaps = 0/651 (0%)
Strand=Plus/Plus
Query 84 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AAACCCTAATTTTCCGATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGT 64
Query 144 AGGGAAGAATTGCTTCGCTATAGCTAGTGATCGGAGGCTTGGTGTGCAATTACAAACCAT 203
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 65 AGGGAAGAACTGCTTCGCTATAGCCAGTGATCGGAGGCTTGGTGTACAATTACAAACCAT 124
Query 204 TGCTACCGATTTTCAGAGAATATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 263
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 125 CGCTACCGATTTTCAGAGAATCTCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGG 184
Query 264 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCGTATTTCGTCATAAGTTATATCA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCGTATTTCGTCATAAGTTATATCA 244
Query 324 GCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCT 383
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 245 GCTTAGGGAAGAAAGAGACATGAAGCCAGAAACTTTCGCTAGTCTTGTATCTGCCATTCT 304
Query 384 TTATGAGAAAAGATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGA 443
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 305 TTATGAGAAAAGATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGACTGGGAGATGA 364
Query 444 TAACAAACCCTTCATTTGCACTATGGATTCTATTGGAGCCAAGGAGTTAGCTAAAGATTT 503
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 TAACAAACCCTTCATTTGCACTATGGATTCGATTGGAGCCAAGGAGTTAGCTAAAGATTT 424
Query 504 TGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACC 563
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 TGTTGTCTCTGGAACTGCTTCAGAATCACTATATGGTGCCTGTGAAGCCATGTTCAAACC 484
Query 564 AGATATGGAAGCTGAGGAACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGA 623
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 485 AGATATGGAAGCTGAGGAATTGTTTGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGA 544
Query 624 CCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTAACACCAAAGGAGGTGAA 683
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 545 CCGCGATTGTCTTAGTGGGTGGGGAGGTCATGTCTACGTTGTAACACCAAATGAGGTCAA 604
Query 684 GGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCT 734
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCT 655
> Ahg912012 jgi|Araly1|912012|Al_scaffold_0001_2266
Length=615
Score = 678 bits (367), Expect = 0.0
Identities = 533/614 (87%), Gaps = 8/614 (1%)
Strand=Plus/Plus
Query 105 GATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGTAGGGAAGAATTGCTTCGCTAT 164
||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||| ||
Sbjct 6 GATCTTCGAGTACAATGGAAGTGCCGTTGTTGCTATGGTAGGTAAGAACTGTTTCGCCAT 65
Query 165 AGCTAGTGATCGGAGGCTTGGTGTGCAATTACAAACCATTGCTACCGATTTTCAGAGAAT 224
|| ||||||||||| || ||||| || |||| || || || || ||||| ||||||||
Sbjct 66 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACTATCGCCACTGATTTCCAGAGAAT 125
Query 225 ATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGAC 284
|| ||||||||||||| | |||||||||| ||||| |||||||| |||||||| || ||
Sbjct 126 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCTACCGATGTTCAAAC 185
Query 285 ATTGTACCAGCGAC-TCGTATTTCGTCATAAG-TTATATCAGCTTAGGGAAGAAAGAGAC 342
| |||||||||| | | || |||||||||||| || || |||||| | ||||| ||||||
Sbjct 186 ACTGTACCAGCG-CTTGGTGTTTCGTCATAAGCTT-TACCAGCTTCGTGAAGAGAGAGAC 243
Query 343 ATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGATTTGGC 402
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 244 ATGAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCTATTCTTTACGAGAAGAGATTTGGT 303
Query 403 CCATT-CTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAACAAACCCTTCATTTG 461
|| || ||| |||||||||||||||||||| |||||||||||| |||| || ||||||||
Sbjct 304 CC-TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTG 362
Query 462 CACTATGGATTCTATTGGAGCCAAGGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGC 521
||| ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 363 CACGATGGACTCTATTGGAGCCAAAGAGTTGGCTAAAGATTTTGTTGTATCTGGAACTGC 422
Query 522 TTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGGAAGCTGAGGA 581
||||||||| || ||||| |||||||| || |||| ||| ||||||||||||||||||||
Sbjct 423 TTCAGAATCACTCTATGGAGCCTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGA 482
Query 582 ACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGACCGCGATTGTCTTAGTGG 641
| | ||||||||||| || |||||||||||||| || |||||||| |||||||| |||||
Sbjct 483 ATTGTTCGAGACAATATCGCAAGCACTTCTCTCGTCGGTTGACCGTGATTGTCTGAGTGG 542
Query 642 GTGGGGAGGACATGTCTACGTTGTAACACCAA-AGGAGGTGAAGGAGAGAATCCTGAAGG 700
||||||||||| |||||| |||||||||||| || || | |||||||| ||||| ||||
Sbjct 543 TTGGGGAGGACACGTCTACATTGTAACACCAACAG-AGATTAAGGAGAGGATCCTAAAGG 601
Query 701 GAAGGATGGATTGA 714
||||||||||||||
Sbjct 602 GAAGGATGGATTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5