BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77450.1
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927147 jgi|Araly1|927147|scaffold_202708.1 1184 0.0
> Ahg927147 jgi|Araly1|927147|scaffold_202708.1
Length=795
Score = 1184 bits (641), Expect = 0.0
Identities = 750/801 (94%), Gaps = 14/801 (2%)
Strand=Plus/Plus
Query 54 TAAAGGGGAAAATAGGTTAATTATGATGAAATCTGGGGCTGATTTGCAATTTCCACCAGG 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TAAAGGGGAAAATAGGTTAATTATGATGAAATCTGGGGCTGATTTGCAATTTCCACCTGG 60
Query 114 ATTTAGATTTCATCCTACGGATGAGGAGCTAGTCCTCATGTATCTCTGTCGTAAATGCGC 173
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 61 ATTTAGATTTCATCCGACGGATGAAGAGCTCGTCCTCATGTATCTCTGTCGTAAATGCGC 120
Query 174 GTCGCAGCCGATCCCTGCTCCGATTATCACCGAACTCGATTTGTACCGATATGATCCTTG 233
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 121 GTCGCAGCCGATCCCTGCTCCTATCATCACCGAACTCGATTTGTACAGATATGATCCTTG 180
Query 234 GGACCTTCCCGACATGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGAGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGACCTTCCCGACATGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGAGA 240
Query 294 TCGAAAGTATCCAAACGGTTCAAGACCCAACCGTGCAGCTGGTACTGGATATTGGAAAGC 353
|||||| || ||||||||||||||||| ||| | || ||||||||||| |||||||||||
Sbjct 241 TCGAAAATACCCAAACGGTTCAAGACCGAACAGGGCTGCTGGTACTGGGTATTGGAAAGC 300
Query 354 TACCGGAGCTGATAAACCAATAGGTCGTCCTAAACCGGTTGGTATTAAGAAGGCTCTAGT 413
|| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACAGGTGCTGATAAACCGATCGGTCGTCCTAAACCGGTTGGTATTAAGAAGGCTCTAGT 360
Query 414 GTTTTACTCGGGAAAACCTCCAAATGGAGAGAAAACCAATTGGATTATGCACGAATACCG 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTTACTCTGGAAAACCTCCAAATGGAGAGAAAACCAATTGGATTATGCACGAATACCG 420
Query 474 GCTCGCTGACGTTGACCGGTCGGTTCGTAAGAAAAACAGTCTAAGATTGGACGATTGGGT 533
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 421 GCTCGCTGACGTGGACCGGTCGGTTCGCAAGAAAAACAGTCTAAGGTTGGACGATTGGGT 480
Query 534 ATTGTGTCGTATATATAACAAGAAAGGTGTCATCGAGAAGCGAC-GAAGCGATATCGAGG 592
| ||||||||||||||||||||||||||||||||||||||| || || |||| ||
Sbjct 481 ACTGTGTCGTATATATAACAAGAAAGGTGTCATCGAGAAGCAACAGA-GCGA----GA-- 533
Query 593 ACGGGTTAAAGCCTGTGACTGACACGTGTCCACCGGAATCTGTGGCGAGATTGATCTCCG 652
||| ||||| | |||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 534 ACGAGTTAAGGGCTGTGAATGACACGTGTCCACCGGAATCTGTGGAGAGATTGATCGCCG 593
Query 653 GCTCGGAGCAAGCGGTGTCACCGGAATTCACGTGTAGCAACGGTCGGTTGAGTAATGCCC 712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTCGGAGCAAGTGGTGTCACCGGAATTCACGTGTAGCAACGGTCGGTTGAGTAATGCCC 653
Query 713 TTGATTTTCCGTTTAATTACGTAGATGCCATCGCCGATAACGAGATTGTGTCACGGCTAT 772
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 654 TGGATTTTCCGTTTAATTACGTAGATGCCATCGCCGATAACGAGATTGTCTCACGGCTAT 713
Query 773 TGGGCGGGAATCAGATGTGGTCGACGACGCTTG-ATCCACTTGTGGTTAGGCAGGGAACT 831
|| ||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 714 TGAGCGGGAACCAGATGTGGTCGACG----TTGGATCCACTTGTGGTTAGGCAGAGAACT 769
Query 832 TTCTGAGTTGTCACGTGCGAT 852
|||||||| ||||||||||||
Sbjct 770 TTCTGAGT-GTCACGTGCGAT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5