BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77470.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476911 jgi|Araly1|476911|fgenesh2_kg.2__2041__AT1G77470.1 2145 0.0
> Ahg476911 jgi|Araly1|476911|fgenesh2_kg.2__2041__AT1G77470.1
Length=1415
Score = 2145 bits (1161), Expect = 0.0
Identities = 1321/1399 (94%), Gaps = 7/1399 (1%)
Strand=Plus/Plus
Query 1 AGAAAATGGCGGAAGGAAAGAGCCTTGAGGG-TTTGGCGCCATTACCGGGGAGAGAGTGA 59
||||||||||||||||||| ||| ||||| ||||||||||| | | ||||||||||||
Sbjct 1 AGAAAATGGCGGAAGGAAA-CCCCTAGAGGGTTTTGGCGCCATCAGC-GGGAGAGAGTGA 58
Query 60 AATTAGGGCTGAGCGAGAGAGATTCTGAAATAATTTCTTTTACGGCGGTGAAGATGACTG 119
|||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 59 AATTAGGGCTGAGCGAGATAGATTCTGAAGCAATTTCTTTTACGGCGGCGAAGATGACTG 118
Query 120 AGCTAACGTCGGCGATGGACATTGACGTAGACGAAATTCAGCCTCGCAAGCCGATAAACA 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 AGATAACGTCGGCGATGGACATTGACGTAGACGAAATTCAGCCTCGCAAGCCGATTAACA 178
Query 180 AGGGCAAAGACGTCGTCGGTTTTGGACCTCCGCCGCAGAGTAAGGCGACGCCTTGGGTTG 239
|||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 179 AGGGCAAAGATGTCGCCGGATTTGGTGCTCCGCCGCAGAGTAAGGCGACGCCTTGGGTTG 238
Query 240 AGAAGTATCGACCTCAGTCGCTTGATGACGTGGCTGCACATCGTGACATTATTGATACGA 299
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 239 AGAAGTACCGACCTCAGTCGCTTGATGACGTCGCTGCACATCGTGACATCATTGACACGA 298
Query 300 TTGATAGGCTGACCAATGAGAACAAATTGCCCCATCTTCTGTTGTATGGTCCTCCCGGTA 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TTGATAGGCTGACCAATGAGAACAAATTGCCCCATCTTCTCTTGTATGGTCCTCCCGGTA 358
Query 360 CTGGCAAAACATCCACCATTCTAGCTGTTGCCCGGAAACTATATGGACCAAAGTACCGGA 419
| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 359 CAGGCAAAACATCCACCATTCTAGCCGTCGCCCGGAAACTATATGGACCCAAGTACCGTA 418
Query 420 ATATGATTCTTGAACTGAACGCATCAGACGATAGAGGAATCGATGTTGTAAGGCAGCAGA 479
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 419 ATATGATTCTTGAACTGAACGCATCAGATGATAGAGGAATTGATGTTGTAAGGCAGCAGA 478
Query 480 TTCAAGATTTCGCTAGCACGCAGAGTTTCTCTTTAGGAAAATCTTCGGTGAAGTTGGTTT 539
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TTCAGGATTTCGCTAGCACGCAGAGCTTCTCTTTAGGAAAATCTTCGGTGAAGTTGGTTC 538
Query 540 TGCTAGATGAAGCAGATGCCATGACAAAAGATGCTCAGTTTGCCTTGCGTAGAGTGATTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGCTAGATGAAGCAGATGCCATGACAAAAGATGCTCAGTTTGCCTTGCGTAGAGTGATTG 598
Query 600 AGAAATACACTAAGAGTACTAGGTTTGCGCTCATTGGAAACCATGTCAATAAGATCATCC 659
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGAAATACACAAAGAGTACTAGGTTTGCGCTCATTGGAAACCATGTCAATAAGATCATCC 658
Query 660 CAGCTTTGCAGTCGAGATGTACTCGATTTAGATTTGCCCCTCTTGATGGAGTTCATATGA 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 659 CAGCTTTGCAGTCGAGATGTACTCGATTTAGATTTGCCCCTCTTGATCCTCTTCATGTGA 718
Query 720 GTCAACGTCTTAAACATGTAATAGAAGCTGAAAGGCTTGTTGTAAGTGACTGTGGTTTGG 779
|||||||||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||
Sbjct 719 GTCAACGTCTGAAACATGTAATAGAAGCTGAAGGGCTTGGTGTTAGTGATTGTGGTTTGG 778
Query 780 CAGCTCTTGTACGGCTGAGCAATGGGGACATGAGAAAAGCATTGAACATTTTGCAGTCAA 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 CAGCTCTTGTACGGCTGAGCAATGGAGACATGAGAAAAGCATTGAACATTTTGCAGTCAA 838
Query 840 CGCATATGGCGTCAAAGGAAATTACAGAGGAAGAGTCAAAGCAAATTACAGAGGAAGACG 899
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 839 CGCATATGTCGTCAAAGGAAATTACAGAGAAAGAGTCAAAGAAAATTACAGAGGAAGAGG 898
Query 900 TTTACCTCTGCACCGGAAACCCATTGCCCAAGGACATTGAGCAGATATCTCACTGGCTTC 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 TTTACCTCTGCACCGGAAACCCATTGCCCAAGGACATTCAGCAGATATCTCACTGGCTTC 958
Query 960 TGAATAAACCATTTGATGAGTGCTACAAAGACGTTTCAGAAATCAAGACGAGAAAAGGAC 1019
||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||
Sbjct 959 TGAATAAACCATTTGATGAGTGCTACAAAAACATTTCAGAAATTAAAACGAGAAAAGGAC 1018
Query 1020 TTGCCATTGTTGATATCGTCAAAGAGATTACCTTGTTTATTTTTAAAATCAAGATGCCTT 1079
||||||||||||||||||||| |||| ||||| ||||| |||| ||||||||||||||||
Sbjct 1019 TTGCCATTGTTGATATCGTCAGAGAGGTTACCATGTTTGTTTTAAAAATCAAGATGCCTT 1078
Query 1080 C-CGCTGTCAGAGTTCAACTGATAAACGATTTGGCAGACATTGAGTACAGATTAAGTTTT 1138
| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1079 CACA-TGTCAGAGTTCAACTGATAAACGATTTGGCAGACATCGAGTACAGATTGAGTTTT 1137
Query 1139 GGTTGCAACGACAAACTGCAGCTTGGAGCTATCATTTCTACTTTCACACATGCCCGGTCT 1198
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GGGTGCAACGACAAACTGCAGCTTGGAGCTATCATTTCTACGTTCACACATGCCCGGTCT 1197
Query 1199 ATCATTGTTGGTGCAGCAAAGTAAACCATGTTTTTACCATTTTGGAACCCGCAGTAGCTC 1258
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATCATTGTTGATGCAGCAAAATAAACCATGTTTTTACCATTTTGGAACCCGCAGTAGCTC 1257
Query 1259 GCCACCTTAACAAACCGCTAGAATGTTTTATCTCCGTGATGTTTTCCTGATAGTCTCTGT 1318
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1258 GCCACCTTAACAAACCGCTAGAATATTTTATCTCGGTGATGTTTTCCTGATAGTCTCTGT 1317
Query 1319 ACATTTTGTGGCGTTTGTGACCAATAGGCTTGCTTTTTA-TTTCTTATGAAGAGTTTCAA 1377
||||||| |||||| ||||||||| || ||||||||| | |||| |||||||||||||||
Sbjct 1318 ACATTTTATGGCGTATGTGACCAA-AGCCTTGCTTTTAAATTTCCTATGAAGAGTTTCAA 1376
Query 1378 TGCCACCTTGTTATCCTCT 1396
|||||||||||||||||||
Sbjct 1377 TGCCACCTTGTTATCCTCT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5