BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77480.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476912 jgi|Araly1|476912|fgenesh2_kg.2__2042__AT1G77480.1 2357 0.0
Ahg942237 jgi|Araly1|942237|scaffold_602781.1 135 8e-31
> Ahg476912 jgi|Araly1|476912|fgenesh2_kg.2__2042__AT1G77480.1
Length=1641
Score = 2357 bits (1276), Expect = 0.0
Identities = 1444/1522 (95%), Gaps = 24/1522 (2%)
Strand=Plus/Plus
Query 90 ATTCTACAAAGAAA-AAG-CCTCCTTTTTGTTGCCCTGTGTCAAAAAAGAAACCTTTTTG 147
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ATTCTACAAAGAAAGGAGCCCTCCTTTTTGTTGCCCTGTGTCAAAAAAGAAACCTTTTT- 132
Query 148 GTGGGATTTGGTTTCGCTTTCTTGGGGGCC-AAAAAGAGGAGATGATGAATCCGAATAAG 206
| ||||||||||||||||||||| |||||| ||||| | | || |||||||||| | ||
Sbjct 133 G-GGGATTTGGTTTCGCTTTCTT-GGGGCCAAAAAAAAAG-GA-GATGAATCCG-A-AA- 185
Query 207 CAGCAAAGAAGAAACCTTTACTTCTTCTTC---GTCTTCGTCTTCTATGTCTTCATCCTC 263
||| | | |||||||||| ||||||||||| ||||||||||||||||| ||| |||||
Sbjct 186 CAGGAGACAAGAAACCTTCACTTCTTCTTCTTAGTCTTCGTCTTCTATGTGTTCGTCCTC 245
Query 264 TGTGCTCGCTTTCAAACCTCTGAAGCTACT---AAAGACTCGTCGGCT---CAAGTGAAG 317
||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||
Sbjct 246 TGTGCTCGCTTTCAACCCTCTGATGCTACTACCAAAGACTCGTCGGCTGGACAAGTGAAG 305
Query 318 TTACAGAATCGTCGACTTAGCTCCACCGTCGTGTTTCCTGTCTCCGGGAATGTGTATCCT 377
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 306 TTACAGAATCGTCGACTTGGCTCCTCCGTCGTGTTTCCTGTCTCCGGGAATGTGTATCCT 365
Query 378 CTTGGGTACTATTATGTGTTGCTTAACATTGGCAACCCACCTAAGCTCTTTGACTTGGAC 437
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 366 CTTGGGTACTATTATGTGTTGCTTAACATCGGCAACCCACCTAAGCTCTTTGACTTGGAC 425
Query 438 ATTGACACTGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCTTGCAACGGTTGCACA 497
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 426 ATTGACACTGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCCTGCAACGGTTGCACA 485
Query 498 AAGCCTCGTGCTAAGCAGTACAAGCCCAATCACAACACTTTGCCTTGTTCACA-CATCTT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 486 AAGCCTCGTGCTAAGCAGTACAAGCCCAATCACAACACTTTGCCTTGTTCACACCA-CTT 544
Query 557 GTGTTCTGGTCTTGACCTTCCCCAGGACAGACCTTGTGCTGACCCTGAGGATCAATGTGA 616
||||||||| || |||||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 545 GTGTTCTGGCCTCGACCTTACCCAAAATAGACCTTGTGATGACCCTGAGGATCAATGTGA 604
Query 617 CTATGAAATCGGATACTCCGATCATGCATCATCTATTGGTGCACTTGTAACTGATGAGGT 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 605 CTATGAAATCGGATACTCCGATCATGCATCATCTATTGGTGCACTTGTAACTGATGAGTT 664
Query 677 TCCTCTAAAACTCGCAAATGGCTCCATTATGAATCTTCGTTTGACATTTGGATGTGGGTA 736
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 665 TCCTCTAAAACTCGCAAATGGCTCCATTATGAATCCTCATTTGACATTTGGATGTGGGTA 724
Query 737 TGATCAGCAGAATCCTGGTCCACATCCTCCTCCTCCAACAGCGGGAATACTTGGCCTTGG 796
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 725 TGATCAGCAGAATCCTGGTCCACACCCTCCTCCTCCAACAGCGGGAATACTTGGCCTTGG 784
Query 797 AAGAGGGAAAGTAGGCCTCTCAACTCAGCTAAAGTCCTTGGGGATAACGAAGAATGTGAT 856
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 AAGAGGGAAAGTAGGCATCTCAACTCAGCTTAAGTCCTTGGGGATAACGAAGAATGTGAT 844
Query 857 TGTGCATTGCTTAAGTCATACTGGTAAAGGCTTTCTCTCTATTGGAGATGAGCTTGTTCC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGTGCATTGCTTAAGTCATACTGGTAAAGGCTTTCTCTCTATTGGAGATGAGCTTGTTCC 904
Query 917 TTCTTCTGGAGTTACATGGACTTCATTGGCTACTAATTCACCTAGTAAAAACTACATGGC 976
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 905 TTCTTCTGGAGTTACATGGAATTCATTGGCTACTAATTCAGCTAGTAAAAACTACATGAC 964
Query 977 TGGACCAGCAGAGCTTCTCTTTAACGACAAGACCACAGGTGTCAAAGGCATTAACGTAGT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGGACCAGCAGAGCTTCTCTTTAACGACAAGACCACAGGTGTCAAAGGCATTAACGTAGT 1024
Query 1037 TTTCGATAGTGGAAGCTCGTACACTTACTTCAATGCAGAAGCATACCAAGCTATTCTCGA 1096
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1025 TTTTGATAGTGGAAGCTCGTACACTTACTTCAACGCCGAAGCATACCAAGCGATTCTCGA 1084
Query 1097 TCTTATAAGAAAAGACTTGAATGGGAAGCCTTTGACGGACACAAAAGATGATAAAAGCTT 1156
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1085 TCTTATAAGAAAAGACTTGAATGGGAAGCCTTTGACGGAGACAAAAGATGATAAAAGCTT 1144
Query 1157 ACCAGTCTGCTGGAAAGGCAAAAAACCTTTGAAATCACTTGATGAGGTTAAGAAATACTT 1216
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1145 ACCGGTCTGCTGGAAAGGTAAAAAACCTTTGAAATCACTTGATGAGGTCAAGAAATACTT 1204
Query 1217 CAAGACGATTACTTTACGATTTGGGAATCAAAAGAATGGTCAGCTATTTCAGGTTCCACC 1276
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1205 CAAGACTATTACTTTACGATTTGGGTATCAAAAGAATGGTCAGCTATTTCAGGTTCCACC 1264
Query 1277 TGAGTCGTATCTCATAATCACCGAAAAAGGAAGA-GTATGTTTGGGTATTCTGAATGGAA 1335
|||||||| |||||| ||||| |||||||||| | |||||||||||||||||||| ||||
Sbjct 1265 TGAGTCGTGTCTCATTATCACTGAAAAAGGAA-ATGTATGTTTGGGTATTCTGAACGGAA 1323
Query 1336 CTGAAATCGGTCTCGAGGGCTACAATATCATTGGAGACATATCTTTCCAAGGGATAATGG 1395
||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTGAAGTCGGGCTCAACAGCTACAATATCATTGGAGACATATCTTTCCAAGGGATAATGG 1383
Query 1396 TGATCTATGACAATGAGAAGCAGAGGATTGGATGGATTTCTTCAGACTGTGACAAACTTC 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TGATCTATGACAATGAGAAGCAGAGGATTGGATGGATTTCTTCAGACTGTGACAAACTTC 1443
Query 1456 CCAATGTGAATCACGACTATGGAGGAGATCTGTCGGAGGAAGCTTATCCAATAGGATTTG 1515
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CCAATGTGAATCACGACTATGAAGGAGATCTGTCGGAGGAAGCTTATCCAATAGGATTTG 1503
Query 1516 GTTTGATAAAAGAGCTTTTCTCAGGAAGTGATTCTTCAAAGAACAAGAACTTGGTCTCAG 1575
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1504 GTTTGATAAAAGAGCTTTTCTCAGGAAGTGATTCTTCTAAGAACAAGAACTTGGTCTCTG 1563
Query 1576 ATGGAGAGCTTTGACACAAGAG 1597
|||||||||||||||||| |||
Sbjct 1564 ATGGAGAGCTTTGACACATGAG 1585
> Ahg942237 jgi|Araly1|942237|scaffold_602781.1
Length=243
Score = 135 bits (73), Expect = 8e-31
Identities = 89/97 (92%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1012 CAGGTGTCAAAGGCATTAACGTAGTTTTCGATAGTGGAAGCTCGTACACTTACTTCAATG 1071
||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 33 CAGGTGTTAGAGGCATTAACTTAGTTTTCTATAGTGGAAGCTCGTACACTTACTTCAATG 92
Query 1072 CAGAAGCATACCAAGCTATTCTCGATCTTATAAGAAA 1108
| ||||||||||||| |||||||||||| |||||||
Sbjct 93 CCGAAGCATACCAAGAGATTCTCGATCTTGTAAGAAA 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5