BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77510.1
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476916 jgi|Araly1|476916|fgenesh2_kg.2__2046__AT1G77510.1 2555 0.0
Ahg921160 jgi|Araly1|921160|scaffold_102441.1 1345 0.0
> Ahg476916 jgi|Araly1|476916|fgenesh2_kg.2__2046__AT1G77510.1
Length=1749
Score = 2555 bits (1383), Expect = 0.0
Identities = 1618/1724 (94%), Gaps = 45/1724 (3%)
Strand=Plus/Plus
Query 5 AATGCGCTCATAAATATCATCTTCTCTATTgagaagaagaagaagaattcacaagaagaa 64
|||||||| |||||||||||| || || ||| |||||||||||||| ||| |||||
Sbjct 1 AATGCGCTGATAAATATCATC-TC-CT-CTGATAAGAAGAAGAAGAA--CAC---AAGAA 52
Query 65 tattcac--ag--ag---a-agagagagCGATAATAATGGCGTTTAAGGGTTTCGCGTGT 116
||||||| || || | |||||||||||||||||||||| |||||||||||||||||
Sbjct 53 TATTCACAGAGAAAGAAAAGAGAGAGAGCGATAATAATGGCGATTAAGGGTTTCGCGTGT 112
Query 117 TTTTCGATTCTTTTGTTGTTGTCTCTATTCGTTTCCTCTATACGAAGCGAGGAGACGAAG 176
|||||||| ||||| ||||| ||||| |||| |||||| ||| |||||||| ||||||||
Sbjct 113 TTTTCGATCCTTTTATTGTTATCTCTGTTCGCTTCCTCCATAAGAAGCGAGCAGACGAAG 172
Query 177 GAATTTGTCTTGACTCTCGATCACTCTAACTTCACCGAAACCATCTCCAAGCACGATTTC 236
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 173 GAATTTGTCTTGACTCTCGATCACTCTAACTTCACCGAAACCATCACCAAACACGATTTC 232
Query 237 ATCGTCGTCGAGTTCTACGCCCCTTGGTGTGGTCACTGCCAGAAGCTTGCTCCTGAGTAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCGTCGTCGAGTTCTACGCCCCTTGGTGTGGTCACTGCCAGAAGCTTGCTCCTGAGTAC 292
Query 297 GAGAAGGCTGCATCAGAGTTGAGTAGTCATAACCCTCCTCTTGCTCTCGCCAAGATCGAT 356
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 293 GAGAAGGCTGCATCAGAGTTGAGCAGTCATAACCCACCTCTCGCTCTCGCCAAGATTGAT 352
Query 357 GCTAGTGAAGAAGCAAACAAAGAATTTGCTAATGAGTACAAGATTCAGGGTTTCCCCACT 416
|||||| ||||||||||||||| |||||| || || ||||||||||||||||||||||||
Sbjct 353 GCTAGTCAAGAAGCAAACAAAGGATTTGCAAACGAATACAAGATTCAGGGTTTCCCCACT 412
Query 417 CTTAAGATTTTGAGAAATGGAGGGAAGTCGGTTCAAGATTACAACGGACCTCGTGAAGCT 476
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 413 CTTAAGATTTTGAGAAATGGAGGGAAATCAGTTCAAGATTACAACGGACCTCGTGAAGCT 472
Query 477 GAGGGTATTGTCACTTATTTGAAGAAGCAAAGTGGTCCTGCTTCTGTTGAAATTAAGTCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAGGGTATTGTCACTTATTTGAAGAAGCAAAGTGGTCCTGCTTCTGTTGAAATTAAGTCA 532
Query 537 GCTGATTCTGCCACTGAGGTTGTTGGTGAAAAGAATGTTGTTGCTGTTGGAGTGTTCCCT 596
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 533 GCTGATTCTGCCGCTGAGATTGTGGGTGAAAAGAATGTTGTTGCTGTTGGAGTGTTCCCT 592
Query 597 AAATTATCCGGGGATGAGTTTGATTCTTTCATGGCCCTTGCTGAGAAATTGCGTGCTGAC 656
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAATTATCTGGCGAGGAGTTTGATTCTTTCATGGCCCTTGCTGAGAAATTGCGTGCTGAC 652
Query 657 TATGATTTCGCACACACTTTGGATGCTAAGTTTCTTCCTCGTGGAGAGTCTGTGGAAGGA 716
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 653 TATGATTTCGCACACACTTTGGATGCCAAGGTTCTTCCTCGTGGAGAGTCTGTGGAAGGA 712
Query 717 CCTGCAGTGAGGCTGTTCAAGCCTTTTGATGAATTGTTTGTTGACTCCAAGGACTTCAAT 776
|||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 713 CCTGTAGTGAGGCTATTCAAGCCTTTTGATGAGTTGTTTGTTGATTCCAAGGACTTCAAT 772
Query 777 GGGGAAGCTCTAGAGAAATTTGTCAAAGAATCAAGTATCCCACTTGTCACCGTCTTTGAC 836
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 773 GGGGAAGCTCTAGAGAAATTTGTCAAAGAATCAAGTATTCCACTTGTCACCGTCTTTGAC 832
Query 837 AGTGATCCAAACAACCACCCTTATGTTGCCAAATTCTTTGAAAGCCCTGCCACTAAGGCG 896
|||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 833 AGTGATCCAAACAACCACCCATATGTTGTCAAATTCTTTGACAGCCCTGCCACTAAGGCA 892
Query 897 ATGATGTTCGTTAACTTCACTGGAGCAACAGCTGAAGCTCTAAAATCAAAGTACCGTGAA 956
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 893 ATGATGTTCGTTAACTTCACCGGAGCAACAGCTGAATCTCTAAAATCAAAGTACCGTGAA 952
Query 957 GTAGCTACATCCAACAAAGATCAAAGTCTTGCCTTCCTTGTTGGTGATGCAGAGAGCAGC 1016
||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||
Sbjct 953 GTAGCTACATCCAACAAAGGTCAAGGTCTTGCCTTCCTTGTCGGTGATGCTGAGAGCAGC 1012
Query 1017 CAAGGCGCTTTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCCCTCATCATCATCCAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAAGGCGCTTTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCCCTCATCATCATCCAG 1072
Query 1077 ACCCCAGATAACAAGAAGTATTTGAAAGTCAACGTTGAGGTTGACCAGATTGAATCATGG 1136
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1073 ACCCCAGATAACAAGAAGTATTTGAAAGCCAACGTTGAGGTTGACCAGATTGAATCATGG 1132
Query 1137 TTCAAGGACTTCCAGGACGGAAAAGTTGCTGTCCACAAAAAATCCCAACCTATTCCAGCT 1196
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1133 GTCAAGGACTTCCAGGACGGAAAAGTTGCCGCCCACAAAAAATCTCAACCTATTCCAGCT 1192
Query 1197 GAGAACAACGAACCTGTGAAGGTTGTTGTTGCCGAGAGCCTTGACGACATAGTTTTCAAG 1256
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1193 GAGAACAACGAACCTGTGAAGGTTGTTGTTGCCGAGAGCCTTGATGACATAGTTTTCAAG 1252
Query 1257 TCTGGAAAGAATGTCTTGATTGAGTTCTATGCACCATGGTGTGGACATTGTCAAAAACTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TCTGGAAAGAATGTCTTGATTGAGTTCTATGCACCATGGTGTGGACATTGTCAAAAACTT 1312
Query 1317 GCTCCAATCTTGGACGAAGTGGCTTTGTCATTCCAGAACGACCCAAGTGTGATCATAGCA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1313 GCTCCAATCTTGGACGAAGTGGCTTTGTCATTCCAGAACGACCCAAGTGTGATCATTGCA 1372
Query 1377 AAATTGGACGCAACCGCAAATGATATCCCAAGTGATACCTTCGATGTGAAAGGATTCCCG 1436
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1373 AAATTGGACGCAACCGCAAATGATATCCCAAGTGATACCTTTGATGTGAAAGGATTCCCG 1432
Query 1437 ACCATTTACTTCAGGTCAGCGAGCGGAAATGTTGTAGTGTACGAAGGAGACAGGACAAAG 1496
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1433 ACCATTTACTTCAGGTCAGCGAGCGGAAACGTTGTAGTGTACGAAGGAGACAGGACAAAG 1492
Query 1497 GAAGACTTCATAAACTTCGTTGAGAAGAACAGTGAGAAGAAGCCAACTTCTCATGGAGAA 1556
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1493 GAAGACTTCATAAACTTCGTTGAGAAGAACAGTGAGAAGAAGCCAATTTCTCATGGAGAA 1552
Query 1557 GAGTCTACCAAGAGTGAGGAACCTAAGAAGACCGAGGAAACGGCCGCAAAGGACGAGCTG 1616
||||||||||||| | | ||||| | | ||||||||||||||||||||
Sbjct 1553 GAGTCTACCAAGA--------C-T--GAAGA---A--A--CGGCCGCAAAGGACGAGCTG 1594
Query 1617 TAGAAATCTCATGAGTTT-TGTTTCGGAATTT-GAGTAGGAGCGTTTCTCTTCTTCACCA 1674
||||| |||||||||||| | ||||||||||| |||||||||| |||||||||||| |||
Sbjct 1595 TAGAAGTCTCATGAGTTTAT-TTTCGGAATTTTGAGTAGGAGCATTTCTCTTCTTCTCCA 1653
Query 1675 TATCCAACAGAAtcttcttttttcttt-agcagttttacagttt 1717
| | | |||||||||||||||||| | ||||||||||||||
Sbjct 1654 T--C-A---GAATCTTCTTTTTTCTTTTA-CAGTTTTACAGTTT 1690
> Ahg921160 jgi|Araly1|921160|scaffold_102441.1
Length=1551
Score = 1345 bits (728), Expect = 0.0
Identities = 1242/1485 (84%), Gaps = 56/1485 (4%)
Strand=Plus/Plus
Query 72 agagaagagagagCGATAATAATGGCGTTTAAGG-GTTTCGCG-TGTTTTTCGATTCTTT 129
|||||| ||||| || ||||||||| | ||| | |||||| || ||||||| || |
Sbjct 8 AGAGAA-AGAGACCG---ATAATGGCG-ATGAGGCGATTCGCGTTG-TTTTCGA-TC-CT 59
Query 130 TGTTGTTGTC-TCTATTCGTTTCCTCTAT----A-CGAAGCGA-GGAGACGAAGGAATTT 182
|| ||||||| | | |||| ||| ||||| | ||||| || |||||||||||| ||
Sbjct 60 TG-TGTTGTCGT-TGTTCGCTTCTTCTATCAGAAGCGAAGAGACGGAGACGAAGGAGTTC 117
Query 183 GTCTTGA-CTCTCGATCACTCTAACTTCACCGAAACCATCTCCAAGCACGATTTCATCGT 241
|| |||| || | |||||| ||||||||||||| |||||| ||| ||||||||||||||
Sbjct 118 GTGTTGACCT-TGGATCACACTAACTTCACCGATACCATCAACAAACACGATTTCATCGT 176
Query 242 CGTCGAGTTCTACGCCCCTTGGTGTGGTCACTGCCAGAAGCTTGCTCCTGAGTACGAGAA 301
|||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||
Sbjct 177 CGTCGAGTTCTACGCCCCATGGTGTGGACACTGCAAGCAGCTTGCTCCTGAGTACGAGAA 236
Query 302 GGCTGCATCAGAGTTGAGTAGTCATAACCCTCCTCTTGCTCTCGCCAAGATCGATGCTAG 361
|||||| ||||||||||| ||| | |||||| ||| ||| || ||||| ||||| ||
Sbjct 237 GGCTGCGTCAGAGTTGAGCAGTAACGTCCCTCCGGTTGTTCTTGCTAAGATTGATGCAAG 296
Query 362 TGAAGAAGCAAACAAAGAATTTGCTAA-TGAGTACAAGATTCAGGGTTTCCCCACTCTTA 420
||| ||| |||||| ||||||||| || | ||| || ||||||||||||| || | |
Sbjct 297 TGAGGAAACAAACAGAGAATTTGC-AACCCAATACGAGGTTCAGGGTTTCCCAACAATCA 355
Query 421 AGATTTTGAGAAATGGAGG-GAAGTCGGTTCAAGATTACAACGGACCTCGTGAAGCTGAG 479
||||||| ||||| ||||| ||| | || ||||| ||||| |||||||||||||||||
Sbjct 356 AGATTTTCAGAAACGGAGGTAAAG-CTGTACAAGAATACAATGGACCTCGTGAAGCTGAC 414
Query 480 GGTATTGTCACTTATTTGAAGAAGCAAAGTGGTCCTGCTTCTGTTGAAATTAAGTCAGCT 539
|| ||||| ||||| |||||||| |||||||| |||||||| | ||||||||||||||||
Sbjct 415 GGCATTGTTACTTACTTGAAGAAACAAAGTGGACCTGCTTCAGCTGAAATTAAGTCAGCT 474
Query 540 GATTCTGCCACTGAGGTTGTTGGTGAAAAGAATGTTGTTGCT-GTT-GGAGTGTTCCCTA 597
||| ||| ||||||||||||||||| ||||| ||||||| | ||| ||| | |||||||
Sbjct 475 GATGATGCTACTGAGGTTGTTGGTGACAAGAAGGTTGTTG-TGGTTGGGA-TTTTCCCTA 532
Query 598 AATTATCCGGGGATGAGTTTGATTCTTTCATGGCCCTTGCTGAGAAATTGCG-TGCTGA- 655
|| |||| || |||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 533 AACTATCTGGCTCTGAGTTTGATTCTTTCATGGCCATTGCTGAGAAATTGCGCT-CTGAG 591
Query 656 CTATGATTTCGCACACACTTTGGATGCTAAGTTTCTTCCTCGTGGAGAGTC-TGTG-GA- 712
|| |||||||||||||| | ||||||||| ||||||| ||||||||||| | || |
Sbjct 592 TTA-GATTTCGCACACACCTCGGATGCTAAACTTCTTCCCCGTGGAGAGTCATCTGTAAC 650
Query 713 AGGACCTGCAGTGAGGCTGTTCAAGCCTTTTGATGAATTGTTTGTTGACTCCAAGGACTT 772
|||||||| ||| ||||||||||| || ||||||||| ||||||||| |||||||| ||
Sbjct 651 AGGACCTGTAGTCAGGCTGTTCAAACCCTTTGATGAACAGTTTGTTGATTCCAAGGATTT 710
Query 773 CAATGGGGAAGCTCTAGAGAAATTTGTCAAAGAATCAAGTATCCCACTTGTCACCGTCTT 832
| |||| |||||||| |||||||||||||||||||| || || |||||| ||||||||||
Sbjct 711 CGATGGTGAAGCTCTGGAGAAATTTGTCAAAGAATCCAGCATTCCACTTATCACCGTCTT 770
Query 833 TGACAGTGATCCAAACAACCACCCTTATGTTGCCAAATTCTTTGAAAGCCCTGCCACTAA 892
||||| ||||||||||||||||| |||||| ||| |||||||||||| || || ||
Sbjct 771 TGACAAAGATCCAAACAACCACCCATATGTTATCAAGTTCTTTGAAAGCACTAATACCAA 830
Query 893 GGCGATGATGTTCGTTAACTTCACTGGAGCAA-CAGCTGAAG-CTCTAAAATCAAAGTAC 950
||| ||| ||||| | ||||||||||||| || ||| | || |||| ||||||||||||
Sbjct 831 GGCAATGTTGTTCATGAACTTCACTGGAG-AAGGAGCCG-AGTCTCTTAAATCAAAGTAC 888
Query 951 CGTGAAGTAGCTACATCCAACAA-AGATCAAAGTCTT-GCCTTCCTTGTTGGTGATGCAG 1008
|||||||| |||||||||||||| || || ||||| | ||||||| | |||||||| |
Sbjct 889 CGTGAAGTTGCTACATCCAACAAGGGA-CAGGGTCTTAG-CTTCCTTCTAGGTGATGCTG 946
Query 1009 AGAGCAGCCAAGGCGCTTTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCCCTCATCA 1068
||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 947 AGAACAGCCAAGGTGCATTCCAGTACTTTGGACTCGAAGAGAGCCAAGTTCCTCTCATCA 1006
Query 1069 TCATCCAGACCCCAGATAACAAGAAGTATTTGAAAGTCAAC-GTTGAGGTTGACCAGATT 1127
|||||||||| | || ||||||| || ||||| ||| || |||||||||||||||
Sbjct 1007 TCATCCAGACTGCTGACGACAAGAAATACCTGAAAA-CAAATGTGGAGGTTGACCAGATT 1065
Query 1128 GAATCATGG-TTCAAGGACTTCCAGGACGGAAAAGTTGCTGTCCACAAAAAATCCCAACC 1186
||||||||| || ||||||||| |||| |||||| ||||| |||||||||||| |||||
Sbjct 1066 GAATCATGGGTT-AAGGACTTCAAGGATGGAAAAATTGCTCCCCACAAAAAATCTCAACC 1124
Query 1187 TATTCCAGCTGAGAACAACGAACCTGTGAAGGTTGTTGTTGCCGAGAGCCTTGACGACAT 1246
||| ||||| || |||||||| || ||||||||||||||| | || ||||||||||||||
Sbjct 1125 TATCCCAGCCGAAAACAACGAGCCAGTGAAGGTTGTTGTTTCTGACAGCCTTGACGACAT 1184
Query 1247 AGTTTTCAAGTCTGGAAAGAATGTCTTGATTGAGTTCTATGCACCATGGTGTGGACATTG 1306
|| || || ||||||||||| |||||| |||| |||||||| |||||||||||||| ||
Sbjct 1185 TGTCTTAAACTCTGGAAAGAACGTCTTGCTTGAATTCTATGCTCCATGGTGTGGACACTG 1244
Query 1307 TCAAAAACTTGCTCCAATCTTGGACGAAGTGGCTTTGTCATTCCAGAA-CGACCCAAGTG 1365
||||| ||||||||||||||||||||||| ||| |||| | ||| || |||||||||||
Sbjct 1245 CCAAAAGCTTGCTCCAATCTTGGACGAAGTCGCTGTGTCGTACCA-AAGCGACCCAAGTG 1303
Query 1366 T-GATCATAGCAAAATTGGACGCAACCGCAAATGA-TATCCCAAGTGATACCTTCGATGT 1423
| | ||||||| || | || ||||||||||| || | ||||| |||||||||| |||||
Sbjct 1304 TAG-TCATAGCTAAGCTAGATGCAACCGCAAACGACT-TCCCACGTGATACCTTTGATGT 1361
Query 1424 GAAAGGATTCCCGACCATTTACTTCAG-GTCAGCGAGCGGAAATGTTGTAGTGTACGAAG 1482
||| || ||||||||||||||||||| | |||| |||||||| |||| || |||||||
Sbjct 1362 GAAGGGCTTCCCGACCATTTACTTCAAAG-CAGCAAGCGGAAACATTGTGGTTTACGAAG 1420
Query 1483 GAGACAGGACAAAGGAAGACTTCATAAACTTCGTTGAGAAGAACA 1527
||||||||||||||||||| ||||||| |||| | || |||||||
Sbjct 1421 GAGACAGGACAAAGGAAGATTTCATAAGCTTCATCGACAAGAACA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5