BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77520.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476917 jgi|Araly1|476917|fgenesh2_kg.2__2047__AT1G77520.1 1792 0.0
Ahg476918 jgi|Araly1|476918|fgenesh2_kg.2__2048__AT1G77530.1 1332 0.0
Ahg353659 jgi|Araly1|353659|fgenesh1_pg.C_scaffold_7000832 676 0.0
> Ahg476917 jgi|Araly1|476917|fgenesh2_kg.2__2047__AT1G77520.1
Length=1220
Score = 1792 bits (970), Expect = 0.0
Identities = 1142/1225 (93%), Gaps = 11/1225 (1%)
Strand=Plus/Plus
Query 99 ATGGCACTAACTCTCCATGTTGAAACCACATTAATTTCTTATAACCAACAACAATAATGA 158
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 ATGGCACTAACTCTGAATGTTGAAACCACATTACCTTCTTATAACCATCAACAATAATGA 60
Query 159 CAAACCATCTTCAAGATCCCTT-ACCTACTTACCCAAAACCGGTTTTAACCAAAGAAGAA 217
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 CAAACCATCTTCAAGATTCCTTAACC-ACTTACCCAAAACCGGTTTTAACCAAAGAAGAA 119
Query 218 CAAGAAGTGGACGAGAAAATGGTAAGCTTGCAAGCAGAGAGTATCGTGAACACCGTGGCT 277
|||||| | |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 120 CAAGAAATCGACGAGAAAATGGTGAGTTTGCAAGCTGAGAGTATCGTGAACACCGTGGCC 179
Query 278 TTCCCTATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCTGCTGCA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TTCCCTATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCCGCTGCA 239
Query 338 GGAAACGACACGTGGCTCTCACCGTGTGAGATAGCGTGTAGTCTCCCAACCAAACCCACC 397
||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 240 GGAAACGGTACGTGGCTCTCACCGTATGAGATAGCGCGTAGTCTCCCAACCAAACCCACC 299
Query 398 AACCCGGAGGCGCCGGTGTTGCTTGACCGGATGCTGAGCTTACTTGTCAGCCACTCGATC 457
|||||||||||||||||||| || |||||| || || ||||||| |||||||||||||||
Sbjct 300 AACCCGGAGGCGCCGGTGTTACTGGACCGGTTGTTGCGCTTACTCGTCAGCCACTCGATC 359
Query 458 TTGAAGTGCCGTATGATTGAAACCGGAGAGAACGGTCGAACCGGAAAGATCGAGAGGGTA 517
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 TTGAAGTGCCGTATGATTGAAACCGGAGAGAACGGTCAAACCGGAAAGATCGAGAGGGTA 419
Query 518 TATGCAGCCGAACCGGTTTGCAAGTATTTTTTGAGAGATAGTGATGGTA-CAGGATCTCT 576
||||||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 420 TATGCAGTCGAACCGGTTTGCAAGTATTTTTTGAGAGATAGTGATGG-ATCGGGATCTCT 478
Query 577 CGTGCCTCTGTTCATGTTGCTCCATACCCAAGTGTTTTTCAAGACTTGGACAAATCTTAA 636
|||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 479 CGTGTCTCTGTTCATGTTGCTCCATACCGAAGTATTTTTCAAGACTTGGACAAATCTTAA 538
Query 637 AGATGTGATACTAGAAGGAAGAGATGCATTCAACTCTGCCCACGGCATGAAAATCTTCGA 696
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 AGATGTGATACTAGAAGGAAGAGATGCATTCAACTCTGCCCACGGCATGAAAATTTTCGA 598
Query 697 ATACATAAATTCGGATCAACCATTTGCTGAGTTGTTTAATCGTGCAATGTCGGAACCTTC 756
|||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 599 ATACATTAATTCGGATGAACAATTCGCTGAGTTGTTTAATCGTGCAATGTCGGAACCTTC 658
Query 757 CACCATGATCATGAAGAAGGTTCTAGA-CGTATATAGAGGATTTGAAGATGTTAACACTT 815
||||||||||||||||||||||||||| | |||| |||||||| |||||||| |||||||
Sbjct 659 CACCATGATCATGAAGAAGGTTCTAGAAC-TATACAGAGGATTCGAAGATGTAAACACTT 717
Query 816 TGGTGGATGTTGGAGGAGGAAATGGCACTGTTTTAGGTTTAGTCACTTCTAAGTATCCTC 875
|||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 718 TGGTGGATGTTGGAGGAGGAAATGGCACCGTTTTAGGTCTAGTCACTTCCAAGTATCCTC 777
Query 876 ATATCAAAGGTGTTAATTTCGACTTAGCTCAAGTTTTAACCCAAGCTCCTTTTTATCCAG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 ATATCAAAGGTGTTAATTTCGACTTAGCTCAAGTTTTAACCCAAGCTCCTTTTTATCAAG 837
Query 936 GAGTCGAGCATGTATCTGGAGACATGTTTGTAGAAGTTCCAAAGGGAGATGCCGTCTTTA 995
|||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 838 GAGTCGAGCATGTACCTGGAGACATGTTTATAGAAGTTCCAAAGGGAGATGCTGTCTTTA 897
Query 996 TGAAATGGATACTACATGATTGGGGAGACGAGGATTGTATAAAGATTCTGAAA-AATTGT 1054
||||||||||||| ||||||||| ||||| |||||||||||||||| ||| ||||||
Sbjct 898 TGAAATGGATACTGCATGATTGGACCGACGAACATTGTATAAAGATTCT-AAAGAATTGT 956
Query 1055 TGGAAAAGTCTACCGGAAAAAGGGAA-GATTATTATTGTAGAGTTTGTTACACCAAAGGA 1113
||| |||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||
Sbjct 957 TGGGAAAGTCTACCTGAAAAAGGGAAAG-TTATCATTGTAGAGTTGGTTACACCAAAGGA 1015
Query 1114 ACCAAAGGGTGGTGACTTATCTTCTAACACTGTCTTTGCCATGGACTTGTTGATGTTAAC 1173
||||| | ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1016 ACCAATGAGTGGTGACTTATCCTCTAACACTGTGTTTGCCATGGATTTGTTGATGTTAAC 1075
Query 1174 CCAATGCTCTGGTGGTAAAGAGAGATCTCTTTCACAGTTCGAGAATTTGGCGTTTGCGTC 1233
|||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 1076 ACAATGCTCGGGTGGTAAAGAGCGATCTCTTTCGCAGTTCGAGAATTTAGCGTTTGCGTC 1135
Query 1234 AGGTTTTCTTCGATGTGAAATCATTTGTCTTGCTTATTCGTATTCTGTTATCGAATTCCA 1293
|| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1136 TGGCTTTGATCGATGTGAAATCATATGTCTTGCCTATTCGTATTCTGTTATCGAATTTCA 1195
Query 1294 CAAATAA-ATTTGGAATTTAAGAAA 1317
||||||| |||||||||||| ||||
Sbjct 1196 CAAATAAGATTTGGAATTTACGAAA 1220
> Ahg476918 jgi|Araly1|476918|fgenesh2_kg.2__2048__AT1G77530.1
Length=1267
Score = 1332 bits (721), Expect = 0.0
Identities = 1016/1159 (88%), Gaps = 17/1159 (1%)
Strand=Plus/Plus
Query 160 AAACCATCTTCAAGATCCCTT-ACCTACTTACCCAAAACCGGTTTTAACCAAAGAAGAAC 218
||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 6 AAAGCATCTTCAAGAGCCCTTAACC-ACTTACCCAAAACCGGTTTTAACCAAAGAAGAGC 64
Query 219 AAGAAGTGGACGAGAAAATGGTAAGCTTGCAAGCAGAGAGTATCGTGAACACCGTGGCTT 278
||||| | || ||||||||||| ||||||||||| ||||||||||| ||| | |||||||
Sbjct 65 AAGAAATCGAGGAGAAAATGGTGAGCTTGCAAGCGGAGAGTATCGTCAACTCTGTGGCTT 124
Query 279 TCCCTATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCTGCTGCAG 338
|||| |||||||||||||||||||| |||||||| ||||| || || ||||||||| | |
Sbjct 125 TCCCCATGGTTCTCAAAGCCGCCTTGGAGCTTGGAGTCATTGATACGATCGCTGCTACTG 184
Query 339 GAAACGACACGTGGCTCTCACCGTGTGAGATAGC-GTGTAGTCTCCCAACCAAACCCACC 397
| |||| ||||||||||||||||| ||||||||| || |||||||||||| ||||||||
Sbjct 185 GCAACGGCACGTGGCTCTCACCGTCTGAGATAGCGGT-TAGTCTCCCAACGAAACCCACT 243
Query 398 AACCCGGAGGCGCCGGTGTTGCTTGACCGGATGCTGAGCTTACTTGTCAGCCACTCGATC 457
|| |||||||||||||| || || |||||||||||| | |||||||||||||||||||||
Sbjct 244 AATCCGGAGGCGCCGGTATTACTGGACCGGATGCTGCGATTACTTGTCAGCCACTCGATC 303
Query 458 TTGAAGTGCCGTATGATTGAAACCGGAGAGAACGGTCGAACCGGAAAGATCGAGAGGGTA 517
|||||||||||| |||||||||| |||| || |||| ||||||||||||||||||||||
Sbjct 304 TTGAAGTGCCGTCTGATTGAAACAAGAGAAAATGGTCAAACCGGAAAGATCGAGAGGGTA 363
Query 518 TATGCAGCCGAACCGGTTTGCAAGTATTTT-TTGAGAGATAGTGATGG-TACAGGATCTC 575
|||||||| |||||| ||||||||| |||| |||| ||||||||| || | | || ||||
Sbjct 364 TATGCAGCTGAACCGATTTGCAAGT-TTTTCTTGAAAGATAGTGACGGCT-CCGGTTCTC 421
Query 576 TCGT-GCCTCTGTTCATGTTGCTCCATACCCAAGTGTTTTTCAAGACTTGGACAAATCTT 634
|| | | || || || |||||||||||| |||||| || |||| ||||||||||||||
Sbjct 422 TC-TCGTCTTTGCTCTTGTTGCTCCATAGCCAAGTCATTCTCAAAACTTGGACAAATCTC 480
Query 635 AAAGATGTGATACTAGAAGGAAGAGATGCATTCAACTCTGCCCACGGCATGAAAATCTTC 694
|| ||||||||| ||||||||||||||||||||| ||||||||||| ||||| | | |||
Sbjct 481 AAGGATGTGATATTAGAAGGAAGAGATGCATTCAGCTCTGCCCACGACATGAGACTTTTC 540
Query 695 GAATACATAAATTCGGATCAACCA-TTTGCTGAGTTGTTTAATCGTGCAATGTCGGAACC 753
|||||||| | ||| ||| || || || |||||||||||| | || || ||||||||| |
Sbjct 541 GAATACATTAGTTCTGATGAA-CAGTTCGCTGAGTTGTTTCACCGGGCCATGTCGGAATC 599
Query 754 TTCCACCATGATCATGAAGAAGGTTCTAGACGTATATAGAGGATTTGAAGATGTTAACAC 813
|||||| ||| ||||||| || |||||| | ||||| |||||||||||||||||||||||
Sbjct 600 TTCCACTATGGTCATGAAAAAAGTTCTACAAGTATACAGAGGATTTGAAGATGTTAACAC 659
Query 814 TTTGGTGGATGTTGGAGGAGGAAATGGCACTGTTTTAGGTTTAGTCACTTCTAAGTATCC 873
|||||||||||| ||||||||| ||| || | |||||| |||||||||| ||||||||
Sbjct 660 TTTGGTGGATGTCGGAGGAGGATTTGGAACCATATTAGGTCTAGTCACTTCCAAGTATCC 719
Query 874 TCATATCAAAGGTGTTAATTTCGACTTAGCTCAAGTTTTAACCCAAGCTCCTTTTTATCC 933
||||||||||||||||||||||||||||||||| || ||||| || |||||||||| |||
Sbjct 720 TCATATCAAAGGTGTTAATTTCGACTTAGCTCAGGTCTTAACTCATGCTCCTTTTTCTCC 779
Query 934 AGGAGTCGAGCATGTATCTGGAGACATGTTTGTAGAAGTTCCAAAGGGAGATGCCGTCTT 993
|||||| |||||||| || |||||||||||| | ||||||||||||||||||||| ||||
Sbjct 780 AGGAGTTGAGCATGTCTCCGGAGACATGTTTATTGAAGTTCCAAAGGGAGATGCCATCTT 839
Query 994 TATGAAATGGATACTACATGATTGGGGAGACGAGGATTGTATAAAGATTCTGAAAAATTG 1053
||||||||||||||||||||||||||| || ||| |||||||||||||| | ||||||||
Sbjct 840 TATGAAATGGATACTACATGATTGGGGGGATGAGCATTGTATAAAGATTTTAAAAAATTG 899
Query 1054 TTGGAAAAGTCTACCGGAAAAAGGGAAGATT-ATTATTGTAGAGTTTG-TTACACCAAAG 1111
||||||||||||||| |||||||| || | | || ||||||||| | | ||||||||| |
Sbjct 900 TTGGAAAAGTCTACCTGAAAAAGGTAA-AGTGATCATTGTAGAGAT-GATTACACCAATG 957
Query 1112 GAACCAAAGGGTGGTGACTTATCTTCTAACACTGTCTTTGCCATGGACTTGTTGATGTTA 1171
||||||||| | |||||| || ||||||||||| || | |||||||||||||||||||
Sbjct 958 GAACCAAAGCCTAATGACTTTTCCTCTAACACTGTGTTGGGCATGGACTTGTTGATGTTA 1017
Query 1172 ACCCAATGCTCTGGTGGTAAAGAGAGATCTCTTTCACAGTTCGAGAATTTGGCGTTTGCG 1231
|| |||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1018 ACACAATGCTCCGGCGGTAAAGAGCGATCTCTTTCGCAGTTCGAGAATTTGGCGTTTGCG 1077
Query 1232 TCAGGTTTTCTTCGATGTGAAATCATTTGTCTTGCTTATTCGTATTCTGTTATCGAATTC 1291
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1078 TCAGGCTTTCTTCGATGTGAAATCATATGTCTTGCTTATTCATATTCTGTTATCGAATTC 1137
Query 1292 CACAAATAA-ATTTGGAAT 1309
|| | |||| |||||||||
Sbjct 1138 CATAGATAAGATTTGGAAT 1156
> Ahg353659 jgi|Araly1|353659|fgenesh1_pg.C_scaffold_7000832
Length=1020
Score = 676 bits (366), Expect = 0.0
Identities = 830/1046 (79%), Gaps = 63/1046 (6%)
Strand=Plus/Plus
Query 284 ATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCTGCTGCAGGAAAC 343
|||||| ||||||| ||||| |||||||||||| ||||||| || || ||| | ||
Sbjct 1 ATGGTTTTCAAAGCTGCCTTGGAGCTTGGCGTCCTCGACACGAT---TGTTGCCGTTGAC 57
Query 344 GAC-ACG--TGGCTCTCACCGT-GTGAGATAGCGTGTAGTCTCCCAACCAAACCCACCAA 399
||| || |||||||| | | | |||||||| | | ||||||| ||||||||||||||
Sbjct 58 GACGGCGTATGGCTCTCGTCTTCG-GAGATAGCTTTTGGTCTCCCTACCAAACCCACCAA 116
Query 400 CCCGGAGGCGCCGGTGTTGCTTGACCGGATGCTGA-GCTTACTTGTCAGCCACTCGATCT 458
||| |||||||| | ||||| ||||| ||| | | | ||||| ||||||||||||||||
Sbjct 117 CCCAGAGGCGCCAATTTTGCTAGACCGTATG-TTACGGTTACTCGTCAGCCACTCGATCT 175
Query 459 TGAAGTGCCGTATGA-TTGAAACCGGAGAGAACGGTCGAACCGGAAAGATCGAGAGGGTA 517
|||| || ||||| | ||||||||||||| |||| || ||||||||||| | | ||||||
Sbjct 176 TGAAATGTCGTAT-AGTTGAAACCGGAGAAAACGATCTAACCGGAAAGACCCAAAGGGTA 234
Query 518 TATGCAGCCGAACCGGTTTGCAAGTATTTT-TTGAGA--GATAGTG--ATGGTACAGGAT 572
||||||||||||||||||||||||| |||| || | | | | ||| | | | |||| |
Sbjct 235 TATGCAGCCGAACCGGTTTGCAAGT-TTTTCTTAA-ACCG-TGGTGTCAAG-T-CAGGTT 289
Query 573 CTCTC--GTGCCTCTGTTCATGTTGCTCCATACCCAAGTGTTTTTCAAGACTTGGACAAA 630
||||| || || || |||||||||||||| | |||||| |||||||| ||||||||| |
Sbjct 290 CTCTCACGT-CC-CTATTCATGTTGCTCCAAAGCCAAGTCTTTTTCAAAACTTGGACACA 347
Query 631 TCTTAAAGATGTGATACTAGAAG--GAAGA-GATGCATTCAACTCTGCCCACGGCATGAA 687
||| || ||||||||| || ||| ||| | |||||||||| ||||||||| | |||||
Sbjct 348 TCTGAAGGATGTGATATTACAAGAAGAAAAAGATGCATTCAGCTCTGCCCATGACATGAG 407
Query 688 AATCTTCGAATACATAAA-TTCGGATC-AACCATTTGCTGAGT-TGTTTAATC-GTGCAA 743
| ||||||||||||| || ||| | ||| ||| |||| || |||| || | | ||||
Sbjct 408 ACTCTTCGAATACATTGGGTT-GGA-CGAACAATTCGCTG-GTATGTTAAACCAG-GCAA 463
Query 744 TGTCGGAACCTTCCACCATGATCATGAAGAAGGTTCTAGACGTATATAGAGGATTTGAAG 803
|||| ||| |||| |||||||||||||||||| || | || || || | |||||| |||
Sbjct 464 TGTCAGAATCTTCTACCATGATCATGAAGAAGATTTTCGAAGTTTACAAAGGATTCAAAG 523
Query 804 ATGTTAACACTTTGGTGGATGTTGGAGGAGGAAATGGCACTGTTTTAGGT-TTAGTCACT 862
|||| || ||||| || ||| |||| |||||| |||||| || || | || ||||||
Sbjct 524 ATGTAAATACTTTAGTTGATATTGGGGGAGGACTTGGCACCATTCTAAATCTT-GTCACT 582
Query 863 TCTAAGTATCCTCATATCAAAGGTGTTAATTTCGA-CTTAGCTCAAGTT-TTAACCCAA- 919
|| ||||||||||| || || ||| | |||||||| || ||| || | | ||| | ||
Sbjct 583 TCCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCT-AGC-CACGGTATTAGCT-AAT 639
Query 920 GCTCCTTTTTATCCAGGAGTCGAGCATGTATCTGGAGACATGTTTGTAGAAGTTCCAAAG 979
||||| |||||| ||||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 640 GCTCCATTTTATTCAGGAGTGGAGCATGTATCGGGAGATATGTTTATAGAAGTTCCAAAA 699
Query 980 GGAGATGCCGTCTTTATGAAATGGATACTACATGATTGGGGA-GACGAGGATTGTATAAA 1038
|||||||| |||| |||||||||||| ||||||| ||| | ||||| |||||| ||||
Sbjct 700 GGAGATGCAATCTTCATGAAATGGATATTACATGACTGGA-ACGACGAAGATTGTGTAAA 758
Query 1039 GATTCTGAAAAATTGTTGGAAAAGTCTACCGGAAAAAGGGAAGATT-ATTATTGTAGAGT 1097
|||||| ||||| |||||||| ||||| |||||||| ||||| | | || || || || |
Sbjct 759 GATTCTAAAAAACTGTTGGAAGAGTCTTCCGGAAAA-GGGAAAAGTGATAATAGTTGA-T 816
Query 1098 TTG-TTACACCAA-AGGAACCAAAGGGTGGTGAC-TTATCTTCTAACA-CTGTCTTTGCC 1153
|| |||||||| || |||||||| ||| ||| || ||| |||||| | |||||||
Sbjct 817 ATGGTTACACCATCAG-AACCAAAGAGTGACGACCTTTTCT-CTAACATC-GTCTTTGGT 873
Query 1154 ATGGACTTGTTGATGTTAACCCAATGCTCTGGTGGTAAAGAGA-GATCTCTTTCACAGTT 1212
|||||| ||||| |||| || ||||| || |||||||||| || | ||| |||| |||||
Sbjct 874 ATGGACATGTTGGTGTTGACACAATGTTCGGGTGGTAAAGTGAAG-TCTTTTTCTCAGTT 932
Query 1213 CGA-GAATTTGGCGTTTGCGTCAGGTTTTCTTCGATGTGAAATCATTTG-TCTTGCTTAT 1270
|| | ||| || | ||| || || |||||| ||||||||||| | | ||||||||||
Sbjct 933 TGAAGC-TTTAGCCTCTGCTTCGGGGTTTCTTAAATGTGAAATCAGT-GCTCTTGCTTAT 990
Query 1271 TCGTATTCTGTTATCGAATTCCACAA 1296
| |||| |||||||||| |||||||
Sbjct 991 ACATATTATGTTATCGAAATCCACAA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5