BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77540.1
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339915 jgi|Araly1|339915|fgenesh1_pg.C_scaffold_2002014 505 1e-142
> Ahg339915 jgi|Araly1|339915|fgenesh1_pg.C_scaffold_2002014
Length=312
Score = 505 bits (273), Expect = 1e-142
Identities = 299/312 (96%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 64 ATGGCGACAGAGCCACCAAAGATAGTGTGGAACGAAGGCAAAAGGCGATTCGAGACGGAG 123
|||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGCGACCGAGCCACCGAAGATAGTGTGGAACGAAGGGAAACGGCGATTCGAGACGGAG 60
Query 124 GATCACGAAGCTTTCATAGAATACAAGATGAGAAACAACGGTAAAGTGATGGATCTGGTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATCACGAAGCTTTCATAGAATACAAGATGAGAAACAACGGTAAAGTGATGGATCTGGTT 120
Query 184 CATACTTACGTTCCTTCATTCAAACGAGGATTAGGTTTAGCTTCTCATCTCTGCGTCGCC 243
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATACTTACGTTCCTTCCTCCAAACGAGGATTAGGTTTAGCTTCTCATCTCTGCGTCGCC 180
Query 244 GCTTTCGAACACGCCTCTTCTCACTCCATCTCCATCATCCCTTCTTGCTCCTACGTTTCG 303
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 181 GCTTTCGAACACGCCTCTTCTCACTCCATCTCCGTCATCCCTTCCTGCTCCTATGTTTCG 240
Query 304 GATACGTTTCTTCCTCGAAACCCATCATGGAAGCCTCTGATTCATTCAGAGGTATTCAAG 363
|| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 241 GAAACGTTTCTTCCTCGAAACCCGTCATGGAAGCCTCTGGTTCATTCAGAGGTATTCAAG 300
Query 364 TCTAGCATTTGA 375
|||||||| |||
Sbjct 301 TCTAGCATCTGA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18581771843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5