BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77580.2
Length=2768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476922 jgi|Araly1|476922|fgenesh2_kg.2__2052__AT1G77580.2 3707 0.0
Ahg927190 jgi|Araly1|927190|scaffold_202751.1 163 6e-39
Ahg472419 jgi|Araly1|472419|fgenesh2_kg.1__2373__AT1G21810.1 84.2 5e-15
> Ahg476922 jgi|Araly1|476922|fgenesh2_kg.2__2052__AT1G77580.2
Length=2717
Score = 3707 bits (2007), Expect = 0.0
Identities = 2547/2792 (91%), Gaps = 99/2792 (4%)
Strand=Plus/Plus
Query 1 CAAAAAACAAGATAAAGAGAATtctctcttctctctctctctctctctctcACGCTATAT 60
|||| ||||||||||||||||||||||| ||||||||||||||||||||| || || | |
Sbjct 1 CAAAGAACAAGATAAAGAGAATTCTCTC-TCTCTCTCTCTCTCTCTCTCTAACTCT-T-T 57
Query 61 CTCTGCCTTGTCGCTGTTAATAAATCGTAATAGTGTTTCAGACAGTAGTAGAAGAAGAAG 120
||||||||||||||||||||| ||||||||||||||||||| || | || ||||||||
Sbjct 58 CTCTGCCTTGTCGCTGTTAAT-AATCGTAATAGTGTTTCAG--AG-A-CAGTAGAAGAAG 112
Query 121 AAAGCTTCTTCCTTTTTGCTTGTTTAATCGCTGAtttttttttGTTTCCATTGGGGCATT 180
|||||||||||| ||| || ||| | | | | ||||||||||||||
Sbjct 113 AAAGCTTCTTCC--TTT--TT-TTT--T-G-T-A------------TCCATTGGGGCATT 150
Query 181 TTGGGATCTCAAAGTTCTT--CATACAGTCCCCAAC-CA-AAAGATCCTGAGACTGTTAT 236
|| ||||||| |||||||| || | ||| | | | || ||||| | |||||||||
Sbjct 151 TTCGGATCTCTAAGTTCTTACCA-AAAGT-CTC-TCTCATTCAGATCAT-TGACTGTTAT 206
Query 237 GTGCTGATTGTGATCTTGGAAACTATAAATGGAGAAAAGGAAGAGAGAATCATCTGAGAG 296
||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||||
Sbjct 207 GTGCTGATTGTGATCTTGGAAGCTAGAAATGGAGGAACGGAAGAGAGAATCATCTGAGAG 266
Query 297 AAGCTTTGGTGAATC---AGAGTCTGTGTCTTCACTAT-C-TG-AGAAGGATTCTGAAAT 350
||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||
Sbjct 267 AAGCTTTGGTGAATCAGAAGAGTCTGTGTCTTCACTATCCGAGAAGAAGGATTCTGAAAT 326
Query 351 TCAACCTGAGAGTACAATGGAGTCTC--G-TGATGACGAGAT---ACAATCACCAACGGT 404
|||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||
Sbjct 327 TCAACCTGAGAGTACAATGGAGTCTCATGATGATGATGAGATACAACAATCACCAACGGT 386
Query 405 TTCTTTGGAAGTAGAAACTGAAAAGGAAGAGTTGAAAGATAGCATGAAGACTTTAGCCGA 464
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 387 TTCTTTGGAAGTCGAAACTGAAAATGAAGATTTGAAAGATAGCATGAAGACTTTAACCGA 446
Query 465 GAAACTTTCAGCTGCTCTTGCTAATGTGAGTGCTAAAGATGATCTAGTGAAGCAACATGT 524
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 447 GAAACTTTCAGCTGCTCTTGCTAATGCGAGTGCTAAAGATGATCTGGTGAAGCAACATGT 506
Query 525 CAAAGTCGCTGAAGAAGCTGTCGCTGGGTGGGAGAAAGCTGAAAATGAAGTGGTTGAGTT 584
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CAAAGTCGCAGAAGAAGCTGTCGCTGGGTGGGAGAAAGCTGAAAATGAAGTGGTTGAGTT 566
Query 585 AAAGGAGAAGCTTGAGGCTGCTGATGATAAGAATAGAGTGTTGGAAGATAGAGTAAGCCA 644
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GAAGGAGAAGCTCGAGGCTGCTGATGATAAGAATAGAGTGTTGGAAGATAGAGTAAGCCA 626
Query 645 TCTTGATGGAGCT-TTAAAGGAGTGTGTGAGACAGTTAAGGCAAGCAAGAGATGAACAAG 703
||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 TCTCGATGGAGCTCTT-AAGGAGTGTGTTAGACAGTTAAGGCAAGCAAGAGATGAACAAG 685
Query 704 AACAGAGAATTCAAGATGCTGTGATCGAGAGAACTCAGGAGTTGCAGTCTTCT-AGAACC 762
||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||
Sbjct 686 AACAGAGAATTCAAGATGCCGTGATCGAGAGAACCCAGGAGTTGCAGTCTTCTCA-AACC 744
Query 763 AGCCTTGAGAACCAGATTTTTGAAACTGCAACCAAGTCTGAGGAGCTTAGCCAAATGGCG 822
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGCCTTGAGAACCAGATTCTTGAAACTGCAACCAAGTCTGAGGAGCTTAGCCAAATGGCG 804
Query 823 GAATCTGTGGCGAAAGAAAACGTGATGCTTAGACACGAGCTTCTTGCGCGATGCGAAGAG 882
|| |||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 805 GAGTCTGTGGCTAAGGAAAATGTGATGCTGAGACACGAGCTTCTTGCACGATGCGAAGAG 864
Query 883 CTAGAGATCAGAACTATTGAGAGGGATTTGAGTACCCAAGCAGCTGAAACCGCCAGCAAG 942
|||||||||||||| ||||||||||||||||| || |||||||||||||| || ||||||
Sbjct 865 CTAGAGATCAGAACAATTGAGAGGGATTTGAGCACTCAAGCAGCTGAAACAGCTAGCAAG 924
Query 943 CAGCAGTTAGATAGCATAAAGAAAGTGGCGAAACTTGAGGCTGAGTGCAGGAAGTTTCGG 1002
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 925 CAACAGTTAGATAGCATAAAGAAAGTGGCGAAACTTGAGGCTGAGTGCAGGAAGCTTCGG 984
Query 1003 ATGTTGGCTAAGTCATCAGCTTCGTTTAACGATCATCGATCTACAGATAGTCATTCTGAT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ATGTTGGCTAAGTCATCAGCTTCGTTTAACGATCATCGATCTACAGATAGTCATTCTGAT 1044
Query 1063 GGAGGGGAACGAATGGATGTGAGTTGCTCTGATTCATGGGCATCATCCACATTGATTGAG 1122
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1045 GGAGGGGAACGAATGGATGTGAGTTGCTCTGAGTCATGGGCATCATCCACATTGATTGAA 1104
Query 1123 AAGAGAAGCCTTCAGGGAACTTCCTCTTCCATTGAACTTGATCTCATGGGTGATTTTCTT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 AAGAGAAGCCTTCAGGGAACTTCCTCTTCCATTGAACTTGATCTCATGGGTGATTTTCTT 1164
Query 1183 GAGATGGAACGTCTTGTAGCATTGCCTGAGACGCCAGATGGGAACGGTAAGAGTGGACCT 1242
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1165 GAGATGGAACGTCTTGTAGCATTGCCCGAGACACCAGATGGGAACGGTAAGAGTGGACCT 1224
Query 1243 GAATCAGTTACAGAAGAGGTTGTTGTTCCCTCAGAGAACTCGTTAGCTTCTGAAATAGAA 1302
|||||||||||||| ||| |||||||| |||||||||||||| ||| |||||||||||
Sbjct 1225 GAATCAGTTACAGAGGAGACTGTTGTTCATTCAGAGAACTCGTTGGCTGCTGAAATAGAA 1284
Query 1303 GTACTGACTTCTCGCATTAAGGAACTTGAAGAGAAGTTGGAAAAGTTAGAAGCCGAGAAA 1362
||| |||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1285 GTATTGACTTCTCGAACTAAGGAGCTTGAAGAGAAGTTGGAAAAGTTAGAAGCTGAGAAA 1344
Query 1363 CATGAGCTCGAGAATGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATATAGAGAAC 1422
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1345 CATGAGCTCGAAAAGGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATGTAGAGAAC 1404
Query 1423 TCAGAAGTACTGACTTCTCGAACTAAGGAACTTGAAGAAAAGTTGGAAAAGTTAGAAGCA 1482
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1405 TCAGAAGTACTGACTTCTCGAATTAAGGAACTTGAAGAGAAGTTGGAAAAGTTAGAAGCG 1464
Query 1483 GAGAAAGAGGAGCTC-AAAAGTGAAGTTAAATGTAACAGAGAAAAGGCTGTTGTTCACGT 1541
|||||| | ||||| |||| |||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1465 GAGAAAAATAAGCTCGAAAA-TGAATTTAAAGGTAACAGAGAAGAGGCTGTTGTTCACGT 1523
Query 1542 AGAGAACTCATTGGCTGCTGAAATAGAAGTACTGACTTCTCGAACTAAGGAACTTGAAGA 1601
||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1524 AGAGAACTCGTTGGCTGCTGAAATAGAAGTATTGACTTCTCGAACAAAGGAACTTGAAGA 1583
Query 1602 ACAGTTGGAGAAGTTAGAAGCGGAGAAAGTTGAACTCGAAAGTGAAGTAAAATGTAACAG 1661
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 1584 ACAGTTGGAGAAGTTAGAAGCGGAGAAAGATGAGCTCGAAAGTGAAGTTAAATGTAACAG 1643
Query 1662 AGAAGAGGCTGTTGCTCAAGTAGAGAACTCGTTGGCTACTGAAATAGAAGTATTGACTTG 1721
|||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1644 AGAAGAGGCTGTTGCTCACGTAGAGAACTGGTTGGCTGCTGAAATAGAAGTATTGACTTG 1703
Query 1722 CCGAATCAAGCAACTTGAGGAGAAGTTAGAGAAGTTGGAAGTAGAGAAAGATGAGCTCAA 1781
|||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 1704 CCGAATTAAGCAACTTGAGGAAAAGTTATCGAAGTTGGAAGCAGAGAAAGATGAGCTCAA 1763
Query 1782 AAGTGAAGTTAAATGTAACAGGGAAGTGGAGAGCACATTGAGATTTGAGCTCGAAGCTAT 1841
| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1764 ATGTGAAGTTAGATGTAACAGAGAAGTGGAGAGCACATTGAGATTTGAGCTCGAAGCTAT 1823
Query 1842 TGCTTGTGAAAAAATGGAGCTGGAAAATAAGTTGGAGAAGTTGGAAGTTGAGAAAGCTGA 1901
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1824 TGCTTGTGATAAAATGGAGCTGGAAAATAAGTTGGAGAAGTTGGAGGTTGAGAAAGCTGA 1883
Query 1902 GCTGCAAATATCTTTTGACATAATCAAAGATAAATATGAAGAATCTCAAGTTTGTCTGCA 1961
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1884 GCTGCAAATATCTTTTGACATAATCAAAGATAAGTATAAAGAATCTCAAGTTTGTTTGCA 1943
Query 1962 AGAAATCGAGACGAAGCTGGGGGAGATACAAACGGAGATGA-AACTCGTTAACGAACTAA 2020
|||||| ||||||||| ||| |||||||||||||||||| | || | | |||||||||||
Sbjct 1944 AGAAATTGAGACGAAGTTGGAGGAGATACAAACGGAGATAAGAA-TGGCTAACGAACTAA 2002
Query 2021 AAGCTGAAGTAGAGTCTCAAACCATCGCAATGGAAGCA-GATGCAAAGACTAAATCCGCA 2079
|||| |||||||| ||||||| |||| | ||||||| | || ||||||||||||||| ||
Sbjct 2003 AAGCAGAAGTAGAATCTCAAATCATCTCCATGGAAG-ATGAGGCAAAGACTAAATCCACA 2061
Query 2080 AAGATTGAATCTTTGGAAGAAGACATGAGAAAGGAGAGGTTTGCTTTTGATGAGCTTAGG 2139
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2062 AAGATCAAATCTTTGGAAGAAGAAATGAGAAAGGAGAGGATTGCTTTTGATGAGCTTAGG 2121
Query 2140 AGAAAATGTGAGGCTCTTGAAGAAGAGATCTCTCTCCATAAAGAGAACTCAATCAAGAGT 2199
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 2122 AGAAAATGTGAGGCTCTTGAACAAGAGATATCTCTGCATAAAGAGAACTCAATCAAGAGT 2181
Query 2200 GAAAATAAAGAACCCAAGATCAAACAGGAAGACATAGAAACAGCTGCAGGGAAACTTGCG 2259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 GAAAATAAAGAACCAAAGATCAAACAGGAAGACATAGAAACAGCTGCAGGGAAACTTGCG 2241
Query 2260 AATTGTCAGAAAACAATAGCTTCATTGGGGAAACAG-TTGCAGTCCCTTGCAACACTTGA 2318
||||||||||||||||||||||| ||||| |||||| || || || ||||||||||||||
Sbjct 2242 AATTGTCAGAAAACAATAGCTTCGTTGGGAAAACAGCTT-CAATCTCTTGCAACACTTGA 2300
Query 2319 AGATTTCTTAACCGATACACCGA-TAATTCCAATGGCTGCAAATGGTGTAAGCAGCAGCA 2377
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 2301 AGATTTCTTAACCGATACACCGAGTA-TTCCAATGGCTGCAAATGGTGTAAGCAGCA--A 2357
Query 2378 GCAACTCAGAGAGTTGGAAGGTTCACAAAAACGAAACTTTCATGACAAGAAATCATCCTG 2437
| || ||||||||||| ||||||||| ||||||||||||||| | ||||| || || |
Sbjct 2358 -C--CT-AGAGAGTTGGAGGGTTCACAAGAACGAAACTTTCATGGCGAGAAACCAACCCG 2413
Query 2438 AGTCCATCAAACCAACCAAAGAAACATCTCCATCTTCTTCTTCTTCTACTGCGTCTGCTG 2497
|||| |||||| ||||||| ||||||||||| | ||| |||||||| | ||| ||||||
Sbjct 2414 AGTCAATCAAATCAACCAAGGAAACATCTCCGTGTTCCTCTTCTTC--C-GCGGCTGCTG 2470
Query 2498 CTGTTTCAATGCCAGTTTCAACAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTG 2557
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2471 CTGTTTCAATGCCAGTTTCAACGAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTG 2530
Query 2558 CAACAGTATTCACAAGAAGTAAAGACGGTATCCATCTGGCTATATAACATAACTTTGGCA 2617
||||||||||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct 2531 CAACAGTATTCACAAGAAGTAAAGACGGTATCCATCTAGCAATTTAGCATAACTTTGGCA 2590
Query 2618 GAGTAGGCAGAGAAACTTATCTCTTAGGGTTTAAAAAGGATCCGTTTTTAACA-CCACTT 2676
| || | |||||||| ||||||| ||||| |||||||||| ||||||
Sbjct 2591 G--TA-----------T---CTCTTAGG-TTTAAAA-GGATC-GTTTTTAACAACCACTT 2631
Query 2677 TGTTCCCTTTTCCAGATTTTGAATCCATAGTAGTAGTTTTAAAAGTTAATCTCTAGTGTA 2736
|||||| ||||||||||||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct 2632 TGTTCCTTTTTCCAGATTTTGAATCC-T--TAGTAGTTT-AAAAGATAATCTCTAGTGTA 2687
Query 2737 ATGCAGTGGATGGATATTCCATAAAAGATGTT 2768
|||| || | ||||||||||||||||| |||
Sbjct 2688 ATGC--TGCAGGGATATTCCATAAAAGAAGTT 2717
Score = 399 bits (216), Expect = 4e-110
Identities = 332/385 (86%), Gaps = 19/385 (5%)
Strand=Plus/Plus
Query 1299 AGAAGTACTGACTTCTCGCATTAAGGAACTTGAAGAGAAGTTGGAAAAGTTAGAAGCCGA 1358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1407 AGAAGTACTGACTTCTCGAATTAAGGAACTTGAAGAGAAGTTGGAAAAGTTAGAAGCGGA 1466
Query 1359 GAAACATGAGCTCGAGAATGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATATAGA 1418
|||| || ||||||| |||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 1467 GAAAAATAAGCTCGAAAATGAATTTAAAGGTAACAGAGAAGAGGCTGTTGTTCACGTAGA 1526
Query 1419 GAACTC-----------A----GAAGTACTGACTTCTCGAACTAAGGAACTTGAAGAAAA 1463
|||||| | |||||| ||||||||||||| ||||||||||||||| |
Sbjct 1527 GAACTCGTTGGCTGCTGAAATAGAAGTATTGACTTCTCGAACAAAGGAACTTGAAGAACA 1586
Query 1464 GTTGGAAAAGTTAGAAGCAGAGAAAGAGGAGCTCAAAAGTGAAGTTAAATGTAACAGAGA 1523
|||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1587 GTTGGAGAAGTTAGAAGCGGAGAAAGATGAGCTCGAAAGTGAAGTTAAATGTAACAGAGA 1646
Query 1524 AAAGGCTGTTGTTCACGTAGAGAACTCATTGGCTGCTGAAATAGAAGTACTGACTT-CTC 1582
| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||| | |
Sbjct 1647 AGAGGCTGTTGCTCACGTAGAGAACTGGTTGGCTGCTGAAATAGAAGTATTGACTTGC-C 1705
Query 1583 GAACTAAGGAACTTGAAGAACAGTTGGAGAAGTTAGAAGCGGAGAAAGTTGAACTCGAAA 1642
||| |||| ||||||| ||| |||| |||||| ||||| ||||||| ||| ||| |||
Sbjct 1706 GAATTAAGCAACTTGAGGAAAAGTTATCGAAGTTGGAAGCAGAGAAAGATGAGCTC-AAA 1764
Query 1643 -GTGAAGTAAAATGTAACAGAGAAG 1666
||||||| | ||||||||||||||
Sbjct 1765 TGTGAAGTTAGATGTAACAGAGAAG 1789
Score = 243 bits (131), Expect = 7e-63
Identities = 241/290 (83%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 1254 AGAAGAGGTTGTTGTTC-CCTCAGAGAACTCGTTAGCTTCTGAAATAGAAGTACTGACTT 1312
|||||||| |||||||| | | |||||||||||| ||| |||||||||||||| ||||||
Sbjct 1503 AGAAGAGGCTGTTGTTCACGT-AGAGAACTCGTTGGCTGCTGAAATAGAAGTATTGACTT 1561
Query 1313 CTCGCATTAAGGAACTTGAAGAGA-AGTTGGAAAAGTTAGAAGCCGAGAAACATGAGCTC 1371
|||| | |||||||||||||| | ||||||| ||||||||||| |||||| ||||||||
Sbjct 1562 CTCGAACAAAGGAACTTGAAGA-ACAGTTGGAGAAGTTAGAAGCGGAGAAAGATGAGCTC 1620
Query 1372 GAGAA-TGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATATAGAGAACT------C 1424
|| || |||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 1621 GA-AAGTGAAGTTAAATGTAACAGAGAAGAGGCTGTTGCTCACGTAGAGAACTGGTTGGC 1679
Query 1425 -----A----GAAGTACTGACTT-CTCGAACTAAGGAACTTGAAGAAAAGTTGGAAAAGT 1474
| |||||| |||||| | |||| |||| ||||||| |||||||| ||||
Sbjct 1680 TGCTGAAATAGAAGTATTGACTTGC-CGAATTAAGCAACTTGAGGAAAAGTTATCGAAGT 1738
Query 1475 TAGAAGCAGAGAAAGAGGAGCTCAAAAGTGAAGTTAAATGTAACAGAGAA 1524
| |||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1739 TGGAAGCAGAGAAAGATGAGCTCAAATGTGAAGTTAGATGTAACAGAGAA 1788
> Ahg927190 jgi|Araly1|927190|scaffold_202751.1
Length=411
Score = 163 bits (88), Expect = 6e-39
Identities = 116/129 (90%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 1142 CTTCCTCTTCCATTGAACTTGATCTCATGGGTGATTTTCTTGAGATGGAACGTCTTGTAG 1201
|||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCCATTGAAATTGA-CTCATGGATGATTTTCTTGAGATGGAACGTCTTGTAG 59
Query 1202 CATTGCCTGAGACGCC-AGATGGGAACGGTAAGAGTGGACCTGAATCAGTTACAGAAGAG 1260
|||| || ||||| || |||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 60 CATTTCCCGAGAC-CCTAGATGGGAGCGGTAAGAGTGGACCTGAATCTGTAACAGGAGAG 118
Query 1261 GTTGTTGTT 1269
| |||||||
Sbjct 119 GCTGTTGTT 127
Score = 110 bits (59), Expect = 8e-23
Identities = 146/184 (79%), Gaps = 21/184 (11%)
Strand=Plus/Plus
Query 1359 GAAACATGAGCTCGAGAA-TGAAGTTAAATGTAACAGAGAAGAGGCTGTTGTTCATAT-A 1416
|||| | |||||||| || ||||||||||||||||||||||||||||| | |||| || |
Sbjct 133 GAAAGAGGAGCTCGA-AAGTGAAGTTAAATGTAACAGAGAAGAGGCTGGTATTCAGATCA 191
Query 1417 GAGAACTC-----------A-G-A-A-GTACTGACTT-CTCGAACTAAGGAACTTGAAGA 1460
| ||||| | | | | ||| |||||| | |||| |||| |||||||||
Sbjct 192 AA-AACTCGTTGGCTGCTGAAGTAGAAGTATTGACTTGC-CGAATTAAGCAACTTGAAGT 249
Query 1461 AAAGTTGGAAAAGTTAGAAGCAGAGAAAGAGGAGCTCAAAAGTGAAGTTAAATGTAACAG 1520
||||| || ||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 250 GAAGTTAGAGAAGTTGGAAGCAGAGAAAGATGAGCTCAAAAGGGAAGTAAAATGTAACAG 309
Query 1521 AGAA 1524
||||
Sbjct 310 AGAA 313
> Ahg472419 jgi|Araly1|472419|fgenesh2_kg.1__2373__AT1G21810.1
Length=2015
Score = 84.2 bits (45), Expect = 5e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 2519 CAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCAACAGTATTCACAAGAAGTA 2578
|||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 1796 CAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCCACGGTTTTCACTCGAAGTA 1855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104443451790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5