BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77600.3
Length=4706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927161 jgi|Araly1|927161|scaffold_202722.1 2846 0.0
Ahg359357 jgi|Araly1|359357|fgenesh1_pg.C_scaffold_142000001 462 9e-129
> Ahg927161 jgi|Araly1|927161|scaffold_202722.1
Length=3941
Score = 2846 bits (1541), Expect = 0.0
Identities = 1761/1868 (94%), Gaps = 12/1868 (1%)
Strand=Plus/Plus
Query 275 AAGTAGCGGTACACCTGAATGGAGAAAACTCCGACGCAGATAGTTTCCGAATTATGTTCT 334
||| ||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 3 AAGAAGCGGTACACCGGAATGGAGAAAACTCCGACGCAGATTGTTTCCGAACTGGGTTCT 62
Query 335 CGGTTGCTACAATTATCTCGTCCCAACAAGGATTCTCTGGTCAAGCTT-CTACGGGAAGT 393
|| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 63 CGTTTGCTTCAATTATCTCGTCCCAACAAGGATTCTCTGGTCAAG-TTACTACGGGAAGT 121
Query 394 TGCTAATACTCTCTCTA-AAATCGACCAGCCTTCAGCTACCAACAAGGAAAAAGGTTTGA 452
||||||||| || || | ||||||||||||||||||| || ||||||||||||||| |||
Sbjct 122 TGCTAATACGCTGTC-ACAAATCGACCAGCCTTCAGCCACAAACAAGGAAAAAGGTCTGA 180
Query 453 AACTGATAGAAGCTGAGTTAAGACCTCTGAAGAAGTCCATTATCAAGCATGCTCTTCTTA 512
||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 181 AACTGTTAGAAGCTGAGTTAAGACCTCTGAAGAAATCCATTATCAAGCATGGTCTTCTTA 240
Query 513 AAAATCGTGATAATGACGTGAGTCTTTTGGTCACTGTCTGTGTCTCCGAGCTTTTCCGGA 572
| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 241 AGAATCGTGATAACGACGTGAGTCTCTTGGTCACTGTTTGTGTCTCCGAGCTTTTCCGGA 300
Query 573 TTTTAGCACCTCATCTACCTTTTGAAGACGAGTATCTCAGGGATATCTTCACTCTCTTTA 632
||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 301 TTTTAGCACCTAATCGACCTTTTGAAGACAAATATCTCAGGGATATCTTCACTCTCTTTC 360
Query 633 TTGCTGAGTTTTCTGAGCTATCTGATACTGTAAGCCCTTATTTCTCTAAGAGGGCGAAAA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCTGAGTTTTCTGAGCTATCTGATACTGTAAGCCCTTATTTCTCTAAGAGGGCGAAAA 420
Query 693 TCTTGGAGACAGTCTCTCGATTGAAATTTTGTCTGCTAATGCTGGACGAGGATTGCCAAG 752
|||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 421 TCTTGGAGACTGTCTCTCGATTGAAATGTTGTCTGCTAATGCTGGACGAGGACTGCCTAG 480
Query 753 ATTTAGTTCACGAGATGTTCAACATGTTTTTCTCTCTTGTTAGAGAGCACCATCAACAAA 812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTAGCTCACGAGATGTTCAACATGTTTTTCTCTCTTGTTAGAGAGCACCATCAACAAA 540
Query 813 GTTTAATTAATCAGAAAAGTATGAAAACGCAGCAGCGAAAGGCTAACACGCAGCAAACAC 872
|||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTTAATTAACCAGAAAAATATTAAAACGCAGCAGCGAAAGGCTAACACGCAGCAAACAC 600
Query 873 AACATAGTTTATTTAACAACAT-TTTAGCTATAATGAGTGATGTTCTGGAGGAAGAGGCA 931
|||| ||||||||||||||||| || | |||||||| |||| |||||||||||||||||
Sbjct 601 AACAAAGTTTATTTAACAACATCTTGA-ATATAATGACTGATATTCTGGAGGAAGAGGCA 659
Query 932 AATTCGTCTTTTGTCGTTGTTATTCTGGAAAATCTTGTGAAGGAAGGAGAGGATACAACT 991
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 660 AATTCGTCTTTTGTCGTTGCTATTCTGGAAAATCTTGTGAAGGAGGGAGAGGATACAACT 719
Query 992 TCTGGAGCTGATAAGCTCGCCAGTTCTCTCATTGAAAGGTGTGCCGACAGGCTCGAGCCG 1051
|||| || |||||||||||||||||||||| |||| ||| |||||||||| ||||||
Sbjct 720 TCTGCTCCTTCTAAGCTCGCCAGTTCTCTCATTCAAAGCTGTACCGACAGGCTGGAGCCG 779
Query 1052 TTAATTTGCAGCTTTTTAACATCATGTTTTATGGAAAAAGATTCCATCCAGACCAATCTC 1111
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 780 TTAATTTGCAGCTTTTTAACATCATGCTTTATGGAGAAAGATTCCATCCAGACCAATCTC 839
Query 1112 AAAGATTCTTATCACGAAATCATATTTAAGATCTCCTTAATTGCTCCCCAGATGCTGCTA 1171
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 AAAGATTCTTATCACGAAATCATATTTAAGATCTCCTTAAATGCTCCCCAGATGCTGCTA 899
Query 1172 GCAGTTATCCCAAAATTGACCCAGGAACTACTGACTGATCAGGTCGATGTGCGAATAAAA 1231
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCAGTAATCCCCAAGTTGACCCAGGAACTACTGACTGATCAGGTCGATGTGCGAATAAAA 959
Query 1232 GCCCTTAACTTAGCTGGAAGGATTTTTGCGCAGCCTAAGCACTGTTTAAGTTCTTACGTA 1291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 GCCCTTAACTTAGCTGGAAGGATTTTTGCGCAGCCTAAGCACTGTTTAAGTTCTTACGGA 1019
Query 1292 GAGACATATCAAGATCTTTATGCAGAGTTCTTGAGAAGATTCTCAGATAAATCTGCAGAA 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGACATATCAAGATCTTTATGCAGAGTTCTTGAGAAGATTCTCAGATAAATCTGCAGAA 1079
Query 1352 GTCAGAATGGCTGCATTGAAATGTGGCAAACAGTGTTACTTCGCGAATCCATCTGGAAAT 1411
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1080 GTCAGAATGGCTGCACTGAAATGTGGCAAACAGTGTTACTTTGCGAATCCGTCTGGAAAT 1139
Query 1412 AAAGCATCTGGAGTTCTCACTGCTATCCAGGAACGCCTATTAGACTTTGATGATAGGGTT 1471
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1140 AAAGCATCTGGAGTTCTCACTGCTATCCAAGAACGCCTATTAGATTTTGATGATAGGGTT 1199
Query 1472 CGAACACAGGCTCTAATTGTTGCTTGTGATATTATGAAGTTTAATATGAAGTATGTTCCT 1531
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 CGAACACAGGCTCTGGTTGTTGCTTGTGATATTATGAAGTTTGATATGAAGTATGTTCCT 1259
Query 1532 TTGAATCTAATTTCTGAAGCCAGTGAGAGGCTTCGGGATAAGAAGATATCTGTTAGGAAG 1591
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTGAATCTGATTTCTGAAGCCAGTGAGAGGCTTCGGGATAAGAAGATATCTGTTAGGAAG 1319
Query 1592 AAGGCTCTGCAGAAGCTGACAGAAGTATATCAAGATTATTGTGACAAGTGTTCAGAAGGA 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGGCTCTGCAGAAGCTGACAGAAGTATATCAAGATTATTGTGACAAGTGTTCAGAAGGA 1379
Query 1652 GACATGACAATTACTGATAATTTCGAGCAAATCCCATGCAAAATCTTGCTACTTTGCTGC 1711
||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 GACATGACAATAAATGATCATTTTGAGCAAATCCCATGCAAAATCTTGCTACTTTGCTGC 1439
Query 1712 GAGAAAAATTGTGAAGAATTCAGGTCCCAAAATTTGGAACTTGTGCTCTCCGATGATCTT 1771
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1440 GATAAAAATTGTGATGAATTCAGGTCTCAAAATTTGGAACTTGTGCTTTCCGATGATCTT 1499
Query 1772 TTTCCTCGCCTTCTTCCCGTTGAAGAGAGGATGCGGCACTGGGTCCAATGCTTTGCCATT 1831
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTCCTCGCCTTCTTCCAGTTGAGGAGAGGATGCGGCACTGGGTCCAATGCTTTGCCATT 1559
Query 1832 ATGAATCATATCCAC-TTGAAGTCACTCAATTCAATTTTATCTCAGAAAAGAAGGTTGCA 1890
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ATGAATCATATCCACATT-AAGTCACTCAATTCAATTTTATCTCAGAAAAGAAGGTTGCA 1618
Query 1891 AAATGAATTGCGGCATTGCCTAACCCTCTGGAGGAAAGCTAAGG-TAGACAATATAGAAG 1949
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1619 AAATGAATTGCGGCAATGCCTAACCCTCTGGAGGAAAGCTAAGGAT-GACAATATAGAGG 1677
Query 1950 AAGCACAAAGAAAGAAAAAGAGCTACTTCGTTAAGCTGTCAGCATGCTTTCCAGATGCTT 2009
||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 1678 AAGTTCAAAGAAAGAAAAAGAGCTACTTTGTAAAGCTTTCAGCTTGCTTTCCAGATGCTT 1737
Query 2010 CTGAGGCAGAAGATCTCTTTGAAAAATTAGACCGAATGAGGGATGCATCAATTTTTGATG 2069
| |||||||||||| ||||| ||||| |||||| |||||||||||||||||||| |||||
Sbjct 1738 CCGAGGCAGAAGATTTCTTTCAAAAACTAGACCAAATGAGGGATGCATCAATTTATGATG 1797
Query 2070 TCTTAACTTTACTGCTGGAGGAACTGTCATCCACAAATGCCCAGATTATTAAAGTGATCA 2129
||||||||||||||||||| ||||||||||||||||| || || |||||||||| || |
Sbjct 1798 TCTTAACTTTACTGCTGGATGAACTGTCATCCACAAAGGCTCAAATTATTAAAGAGA--A 1855
Query 2130 TTTTCTCA 2137
|||||||
Sbjct 1856 GTTTCTCA 1863
Score = 1251 bits (677), Expect = 0.0
Identities = 852/931 (92%), Gaps = 33/931 (4%)
Strand=Plus/Plus
Query 3670 CCAGAATAAGGCTAAGTCTCGTACCCGAAATGCGCTGGAACAGAGTTTCATTGAAAGAAT 3729
||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
Sbjct 3042 CCA-AATAAGGCTAAGTCTCGTACCCAAAATGCTTTGGAACAAAGTTTCATTGAAAGAGT 3100
Query 3730 AGTTCATATATTCCAATCACAGATCTCCATGCATGATCAGAGGTGTCAAAAAGATAGCCT 3789
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 3101 AGTTCATATATTCCAATCACAGATCTCCACGCATGATCAGAGGTGTCATAAAGATAGCCT 3160
Query 3790 AGCAGTTGGTTCGGAAGATAAAGTTTTACCTCCATTATTAGGCAATCAAATCGAAACGTC 3849
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 3161 AGCAGTTGGTTCGCAAGACAAAGTTTTACCTCCATTATCGGGCAATCAAATCGAAACGTC 3220
Query 3850 GATTACTGGTTCAACCGAAGCCAGCCAAAATAACACGAGGTGTAGCAGGAAGCGAACTCA 3909
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 3221 AATTACTGGTTCAACCGAAGCCAGCAAAAACAACACGAGGTGTAGCAGGAAGCGAACTCA 3280
Query 3910 TCTGGGAGAACATATTTCTTGTAACTCCTTATCTTTGAGAACAGTTGAGTCGGAAATTCC 3969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3281 TCTGGGAGAACATATTTCTTGTAACTCCTTATCTTTGAGAACAGTTGAGTCGGAAATTCC 3340
Query 3970 AATAAAGAAGCTAGAAAGACACACTACTTGTGCAAAGGAGAGTGTCAAAGCAAGTGTAAG 4029
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 3341 TATAAAGAAGCTAGAAAGACACAATACTTGTTCAAAGGAGAGTGTCGAAGCAAGTGTAAG 3400
Query 4030 CAATAAAATTACATCTTCCAAACACTCCGGGGTAGTATCTGCTTTAAAAGATATTAGCAA 4089
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 3401 CAATAAAATTACATCTTCCAAACACTCCGGGGTAGTATCTGCTTTAAAGGATATCAGCAA 3460
Query 4090 CCACGGCGAAGCAATCATTGGGCAGCGGATTAAATTACTCTCTCCCACAGATGGATGTTT 4149
||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3461 CCATGGTGAAGCAATCATTGGGAAGCGGATTAAATTACTCTCTCCCACAGATGGATGTTT 3520
Query 4150 CTATCCTGGCACTGTTGAGAAGTTTAATTCTAAAAGCAACTCTCACAAGATTATTTTCGA 4209
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3521 CTATCCGGGCACTGTTGAGAAGTTTAATTCTAAAAGCAACTCTCACAAGATTATTTTCGA 3580
Query 4210 CAATGGGGATGTTGAATTGGTTTGCTTGGATAGCGAGAGCTGGGAGACCCTGAGCCATGA 4269
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3581 CAATGGTGATGTTGAATTGGTTTGCTTGGGTAGCGAGAGCTGGGAGACCCTGAGCCATGA 3640
Query 4270 ATCCATGGGGCAACAGGAACGATTGGGAAAGGAGACAGAATCTTATGGTTCTCGGAATTG 4329
|| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||
Sbjct 3641 ATTCATGGGGCAACAGGAAATATTGGGAAAGGAGACGGAATCTTTTGGTTCTCGGAACTG 3700
Query 4330 CGTCCCTGAAATTAGTCATACGCTTGCAAAGGTT-ACTGCCCAAAAGCAGACAACTACAA 4388
|||||||||||| |||||||| |||||||||| | | |||||||||||||| ||||| ||
Sbjct 3701 CGTCCCTGAAATCAGTCATACACTTGCAAAGGCTGA-TGCCCAAAAGCAGAAAACTAGAA 3759
Query 4389 CAAAGCAGCAGAACAAAAAGGTGCCTGCCAAATTGAATCCTCCAGCTGTGCCATGTTTCA 4448
|||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 3760 CAAAGCAGCAGAACAAAAAGTTGCCTGCCAAATTGAATCCTCCAGCTG--C-A------A 3810
Query 4449 TGATGTCAGCAAAATCGAAAAAAGGAAATTCGGATTCTGGAGAAGGATCAGTTTCAGAAG 4508
| |||| |||| | |||||||| | || |||||||||||||||||||||||
Sbjct 3811 --A-GTCAA-AAAA--G------GGAAATTCAGTTTGTGGAGAAGGATCAGTTTCAGAAG 3858
Query 4509 TGACCGACACAAGTGACAATATTGGAC-CAAGAAGAAGTCGGAGACAGAGAATTTCGTAG 4567
||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||
Sbjct 3859 TGACCGACACAAGTGACAATATTGGACTCA-GAAGAAGTCGGAGACAGAGAACTTCTTA- 3916
Query 4568 GAACATGATCCTGTTTAACGACGGAGTTCCT 4598
| || ||| ||||||||||||| ||||
Sbjct 3917 -A----GA-CCTCTTTAACGACGGAGGTCCT 3941
Score = 948 bits (513), Expect = 0.0
Identities = 561/585 (96%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 2165 GAGAAGTTTCTCAAGATGATTGGTGTTAAACATTCTCTTTTCGAGTTCTTGCGCATACTT 2224
|||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 1851 GAGAAGTTTCTCAACATGTTTGGTGCTAAACATTCTCTTTTCGAGTTCCTGCGCATACTT 1910
Query 2225 TCTACAAAATGTTCGCCTAGTATATTTAGCTCAGAGCATGTTCAGTGTCTTTTGAATCAG 2284
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TCTACAAAATGTTCGCCTAATATATTTAGCTCAGAGCATGTTCAGTGTCTTTTGAATCAG 1970
Query 2285 CTTTGTGGCAGCACCTCTGCCAACACGCAATTGAAGGCTCCTTCCATCAAACTTCTTCTG 2344
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CTTTGTGGCAGCACCTCTGTTAACACGCAATTGAAGGCTCCTTCCATCAAACTTCTTCTG 2030
Query 2345 GTAATTCTCAACATGTTCCCTTCTTACCTGAGAGGTTCGGAAAAGCAGTTTCTGAAGCTG 2404
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2031 GTTATTCTCAACATCTTCCCTTCTTACCTGAGAGGTTCAGAAAAGCAGTTTCTGAAGCTG 2090
Query 2405 CTAGAGGAGAATGATTCAGCTGCTGATGAGCTAATTGTAGTTTTATCAAAGGCAGCTCCT 2464
|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2091 CTAGAGGAGAATTATTCAGCTGCTGACGAGCTAACTGTAGTTTTATCAAAGGCAGCTCCT 2150
Query 2465 TATATTTCTGTCAACTTCGGTGACTATTACCCTGTTCTGGAGAAGGTTTGTCTGGAGGGT 2524
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2151 TATATTTCTGTCAACTTCGGTGACTATTACCCTGTTCTGGAGAAGGTGTGTCTGGAGGGT 2210
Query 2525 ACTCGTTCTCAGACCAAATGTGCGGTTTCTGCCATCAGTTCATTGGCTGGATCATCTGAA 2584
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2211 ACTCGTTCTCAGGCAAAATGTGCGGTTTCTGCCATCGGTTCATTGGCTGGATCATCTGAC 2270
Query 2585 AAATCAGTCTTTTCTGAGTTATGCGAGATGCTCATGGATTCTTTGCTGTGTGGACGGAAC 2644
||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2271 AAATCTGTATTTTCCGAGTTATGCGAGATGCTCATGGATTCTTTGCTGGGTGGACGGAAC 2330
Query 2645 ATTCCAACAACTTTGCAGTCTTTGGCGTGTGTTGGGCAATATTCTGTTTTGGAATATGAC 2704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2331 ATTCCAACAACTTTGCAGTCTTTGGCGTGTGTTGGGCAATATTCTGTTTTGGCATATGAC 2390
Query 2705 AATATATATGAAGATATCACCAGCTACATATACCGGGTTTTTCAA 2749
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2391 AATATATATGAAGATATCACCAGCTACATATACCAGGTTTTTCAA 2435
Score = 536 bits (290), Expect = 5e-151
Identities = 314/326 (96%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 3209 AGATACATCAATGGATTCATCAACAAGGCTACAAGAGAATCTCGGACATGTCGGGATTTA 3268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2718 AGATACATCAATGGATTCATCAACAATGCTACAAGAGAATCTCGGACATGTCGGGATTTA 2777
Query 3269 GATCAAGGGGAATCACTCACTGATAGTCCAGTTTACATGACAGTGTTCCTAATTCATGTT 3328
|||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 2778 GATCAAGGAGAATCACTCACTGATAGTCCAGCTTATATGATAGTGTTCCTAATTCATGTT 2837
Query 3329 CTTGCACATGACCCAGAGTTCCCTTCAGAAGACTGCAGGGACGAGCATATCTATGCTCGC 3388
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2838 CTTGCACATGACCCAGAGTTCCCTTCAGAAGACTGCAGGGACGAGCATGTCTATGCTCGC 2897
Query 3389 TTTTGTGGCCCTCTGTTCTCGGTCTTACAGGTGTTACTTAGTATCAACAATAATGGTTTT 3448
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2898 TTTTGTGGCCCTCTGTTCTCGGTCTTACAGGTGTTTCTTAGTATCAACAATAATGGTTTT 2957
Query 3449 ACCATCAAGGAAACCGCCCCTTTTTTGTTTTGTATCTTCCGTGCAATTAAAAGAGCTGAA 3508
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2958 ACTATCAAGGAAACCGCCCCTTTCTTGTTCTGTATCTTCCGTGCAATTAAAAGAGCTGAG 3017
Query 3509 GATGCAGTTGATTCTCGTAAAACGCC 3534
||||| ||||||||||||||||||||
Sbjct 3018 GATGCTGTTGATTCTCGTAAAACGCC 3043
Score = 274 bits (148), Expect = 4e-72
Identities = 239/277 (86%), Gaps = 29/277 (10%)
Strand=Plus/Plus
Query 2819 ATATATGGGCTCAAAACACTTGTGAAAAGTTTCTTGCCTCGTCATGGTCAAGTCGTAAGG 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2436 ATATATGGGCTCAAAACACTTGTGAAAAGTTTCTTGCCTCGTCATGGTCAAGTCGTAAGG 2495
Query 2879 AAAATTGACGACTTGCTAAACATTTTGAAGAAAACATTAAAAT--C----ACA--A-GG- 2928
||||| || ||||||||||||||||||||||||||| |||||| | ||| | ||
Sbjct 2496 AAAATCGAGGACTTGCTAAACATTTTGAAGAAAACACTAAAATCACAAGGACACGATGGC 2555
Query 2929 A-C--A-CGAT-G-GC--A-----TC---AAA-TCAT-GCGAGGACACAGGAGCTAATGT 2970
| | | | || | || | || ||| | | ||||||||||||| ||||||||
Sbjct 2556 ATCAAATC-ATGGTGCTTATTTGCTCTTGAAATTTGTAGCGAGGACACAGGGGCTAATGT 2614
Query 2971 TAGACTGGCTGCTGCTAAAGCTGTTCTATTGCTTTCAAGGAAATGGGACCTTCATATTTC 3030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615 TAGACTGGCTGCTGCTAAAGCTGTTCTATTGCTTTCAAGGAAATGGGACCTTCATATTTC 2674
Query 3031 TCCTGAAGTTTTCCGTCTTACCATTTTGATGGCAAAG 3067
||||||| ||||| |||| ||||||||||||||||||
Sbjct 2675 TCCTGAAATTTTCGGTCTAACCATTTTGATGGCAAAG 2711
> Ahg359357 jgi|Araly1|359357|fgenesh1_pg.C_scaffold_142000001
Length=327
Score = 462 bits (250), Expect = 9e-129
Identities = 303/328 (92%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 293 ATGGAGAAAACTCCGACGCAGATAGTTTCCGAATTATGTTCTCGGTTGCTACAATTATCT 352
||||||||||||||||||||||| ||||||||| | ||||||| ||||| |||||||||
Sbjct 1 ATGGAGAAAACTCCGACGCAGATTGTTTCCGAACTGGGTTCTCGTTTGCTTCAATTATCT 60
Query 353 CGTCCCAACAAGGATTCTCTGGTCAAGCTT-CTACGGGAAGTTGCTAATACTCTCTCTA- 410
||||||||||||||||||||||||||| || |||||||||||||||||||| || || |
Sbjct 61 CGTCCCAACAAGGATTCTCTGGTCAAG-TTACTACGGGAAGTTGCTAATACGCTGTC-AC 118
Query 411 AAATCGACCAGCCTTCAGCTACCAACAAGGAAAAAGGTTTGAAACTGATAGAAGCTGAGT 470
||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||
Sbjct 119 AAATCGACCAGCCTTCAGCCACAAACAAGGAAAAAGGTCTGAAACTGTTAGAAGCTGAGT 178
Query 471 TAAGACCTCTGAAGAAGTCCATTATCAAGCATGCTCTTCTTAAAAATCGTGATAATGACG 530
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 179 TAAGACCTCTGAAGAAATCCATTATCAAGCATGGTCTTCTTAAAAATCGTGATAACGACG 238
Query 531 TGAGTCTTTTGGTCACTGTCTGTGTCTCCGAGCTTTTCCGGATTTTAGCACCTCATCTAC 590
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 239 TGAGTCTCTTGGTCACTGTTTGTGTCTCCGAGCTTTTCCGGATTTTAGCACCTAATCGAC 298
Query 591 CTTTTGAAGACGAGTATCTCAGGG-ATA 617
||||||||||||| |||||||||| |||
Sbjct 299 CTTTTGAAGACGAATATCTCAGGGTATA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 178071384067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5