BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77610.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497286 jgi|Araly1|497286|fgenesh2_kg.142__1__AT1G77610.1 2390 0.0
Ahg476925 jgi|Araly1|476925|fgenesh2_kg.2__2055__AT1G77610.1 2366 0.0
Ahg313079 jgi|Araly1|313079|fgenesh1_pm.C_scaffold_1001859 1127 0.0
> Ahg497286 jgi|Araly1|497286|fgenesh2_kg.142__1__AT1G77610.1
Length=1568
Score = 2390 bits (1294), Expect = 0.0
Identities = 1492/1582 (94%), Gaps = 35/1582 (2%)
Strand=Plus/Plus
Query 17 AAAGAGTgagagagagagagTCATAGACAGGAGACGTTTGAGATTGATGAACAGCGAATT 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 AAAGAGTGAGAGAGAGAGAGTCATAGA-GGGAGACGTTTGAGATTGATGAACAGAGAATT 59
Query 77 CGAAACAAATCACATGGAAGAAGAGCTCTCTTTC-GCTACCGTTACCTTCTCCACTTTTC 135
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 60 CGAAACAAATCACATGGAAGAAGAGCTCTC-TTCTGCTACCGTTACCTTCTTCACTTTTC 118
Query 136 TCCTTCATTAGGGTTTTCTCTCTTATTTAGCTGCGCAG----CTCTCTCTCTTTC--T-T 188
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |
Sbjct 119 TCCTTCATTAGGGTTTTCTCTC-TATTTAGCTGCGCAGCTCTCTCTCTCTCTTTCTTTCT 177
Query 189 -A-CG---GATTCAC-T-TCTTAAAACTCGTTAATTTCTTGTGGGTTTTTGTCTCTTTTG 241
| || |||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 CACCGATTCATTCACTTCTCTTAAAACTCGTTAATTTCTTCTGGGTTTTTGTCTCTTTTG 237
Query 242 CGATCTGATTCCGAAAGTTGAGTGAGAGTGAGAGAATCATGGAGGAAGGAAGTATGTTCA 301
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 238 CGATCTGATTCCGAAAGTTGAGT--GA--GAGAGAATCATGGAGGAAGGAAGTATGTTCA 293
Query 302 GATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACA 361
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 294 GATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTAATCATCATGAACA 353
Query 362 AATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGTGTTCACTTCA 421
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 354 AATGGATATTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGTTCACTTCA 413
Query 422 TATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGATTG 481
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 414 TATGTTCATCGATTGGAGCTTACATCGTCATCAAAGTTCTTAAGCTTAAACCATTGATTG 473
Query 482 TTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTATCA 541
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTGTTGAACCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTATCA 533
Query 542 ACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTA 601
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 534 ACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATGCAGACGATTA 593
Query 602 AGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGAGGAAATACTTTG 661
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 594 AATCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTTGTATGGAGGAAATACTTTG 653
Query 662 ACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTGTGA 721
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 654 ACTGGCGTATTTGGGCGTCTCTCGTGCCCATTGTTGGTGGAATTCTTCTGACATCTGTGA 713
Query 722 CTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGATGTTTAGCTACTT 781
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 714 CTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATGTTTAGCTACTT 773
Query 782 CCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGCATAAACA 841
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 CCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGACAGCATAAACA 833
Query 842 CCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGG 901
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 834 CCGTATACTATATGGCGCCTTTTGCTACCATGATTCTCGGGATACCAGCACTATTACTGG 893
Query 902 AAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCATCA 961
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAGGCAGTGGAATTTTGAGTTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCATCA 953
Query 962 TTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTATGTCATTC 1021
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 TTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTACGTCATTC 1013
Query 1022 ACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGGTTGCAGTGGCTGTAA 1081
|||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1014 ACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGTTGCCGTAGCTGTAT 1073
Query 1082 TGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAA 1141
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 TGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGCTGTTGGATGCGGAA 1133
Query 1142 TTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAACAC 1201
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1134 TTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCGCAGCAAACAC 1193
Query 1202 CGGGAACTCCTAGGACTCCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCACTTGTTA 1261
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1194 CAGGAACTCCTAGGACACCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCTCTTGTTA 1253
Query 1262 ATAATGATAAACTCGAAGGCAAAGTCTGATCTTCTTCATTCCGCAGCTCAGTTTAG---T 1318
||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
Sbjct 1254 ATAATGATAAACTCGAAGGCAAAGTCTGATCTTATCCAATCCGCAGCTCAGTTTAGCACT 1313
Query 1319 -ACT--CACTGGTTCAGGGTGCTGCAGAAGAGAAGCATTGACACAAGGGGTGTTGAATTT 1375
||| |||||| ||||||| |||| ||||||||||||| ||||| | ||||||||||
Sbjct 1314 CACTGTCACTGGATCAGGGTACTGCGGAAGAGAAGCATTCACACA-G---TGTTGAATTT 1369
Query 1376 TTACTAAATATGCATTTTACTCAAAAACCTTAGTAGAGAAAAGTTACAtttttttttttC 1435
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1370 TTACTAAATATGCGTTTTACTCAAAAACCTTAATAGAGAAAAGTTACATTTTTTTTTTTC 1429
Query 1436 GTTTTGATTTGAGCTCGTAGAAGAGATAATGGTTCCTACTACTATTTATATTTCTGTGAA 1495
|||||||||| |||||||||||||||||||||||||||||| | || |||| ||||||||
Sbjct 1430 GTTTTGATTTAAGCTCGTAGAAGAGATAATGGTTCCTACTA-T-TT-ATATCTCTGTGAA 1486
Query 1496 GTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCCGAAGGAGAGAACTACTAC 1555
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1487 GTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCTGAAGGAGAGTACTACTAC 1546
Query 1556 ATTTATTGCTTCTTCTTTTTTG 1577
||| ||||||||||||||||||
Sbjct 1547 ATTAATTGCTTCTTCTTTTTTG 1568
> Ahg476925 jgi|Araly1|476925|fgenesh2_kg.2__2055__AT1G77610.1
Length=1562
Score = 2366 bits (1281), Expect = 0.0
Identities = 1490/1586 (94%), Gaps = 33/1586 (2%)
Strand=Plus/Plus
Query 1 ATAATTTTCATGGCATAAAGAGTgagagagagagagTCATAGACAGGAGACGTTTGAGAT 60
||||||||||||||||||| || |||| ||||||||||| ||| |||||||||||||||
Sbjct 1 ATAATTTTCATGGCATAAAAAGAGAGAAAGAGAGAGTCAAAGA-GGGAGACGTTTGAGAT 59
Query 61 TGATGAACAGCGAATTCGAAACAAATCACATGGAAGAAGAGCTCTCTTTC-GCTACCGTT 119
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 60 TGATGAACAGAGAATTCGAAACAAATCACATGGAAGAAGAGCTCTC-TTCTGCTACCGTT 118
Query 120 ACCTTCTCCACTTTTCTCCTTCATTAGGGTTTTCTCTCTTATTTAGCTGCGCAGCTCTCT 179
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 ACCTTCTTCACTTTTCTCCTTCATTAGGGTTTTCTCTC-TATTTAGCTGCGCAGCTCTCT 177
Query 180 CTCTTTCT-TACGGATTCACTTCTTAAAACTCGTTAATTTCTTGTGGGTTTTTGTCTCTT 238
|||| ||| | | ||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 178 CTCTCTCTCT-CTCTTTCTCATCTTAAAACTCGTTAATTTCTTCTGGGTTTTTGTCTCTT 236
Query 239 TTGCGATCTGATTCCGAAAGTTGAGTGAGAGTGAGAGAATCATGGAGGAAGGAAGTATGT 298
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 237 TTGCGATCTGATTCCGAAAGTTGAGT--GA--GAGAGAATCATGGAGGAAGGAAGTATGT 292
Query 299 TCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGA 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 293 TCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTCATCATCATGA 352
Query 359 ACAAATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGTGTTCACT 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 353 ACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGTTCACT 412
Query 419 TCATATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGA 478
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCATATGTTCATCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGA 472
Query 479 TTGTTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTA 538
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 473 TTGTTGTTGA-CCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTA 531
Query 539 TCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGA 598
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 532 TCAACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATGCAGACGA 591
Query 599 TTAAGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGAGGAAATACT 658
|||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 592 TTAAATCTTTCACTCCAG---CTAC--------TACAGTGGCTAGTATGGAGGAAATACT 640
Query 659 TTGACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTG 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 641 TTGACTGGCGTATTTGGGCGTCTCTCGTGCCCATTGTTGGTGGAATTCTTCTGACCTCTG 700
Query 719 TGACTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGATGTTTAGCTA 778
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 TTACCGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATGTTTAGCTA 760
Query 779 CTTCCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGCATAA 838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 CTTCCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGACAGCATAA 820
Query 839 ACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTAC 898
|||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 821 ACACTGTATACTATATGGCGCCTTTTGCCACCATGATCCTCGGGATACCAGCACTATTAC 880
Query 899 TGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCA 958
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 881 TGGAAGGCAGTGGAATTTTGAGTTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCA 940
Query 959 TCATTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTATGTCA 1018
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 941 TCATTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTACGTCA 1000
Query 1019 TTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGGTTGCAGTGGCTG 1078
||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1001 TTCACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGTTGCCGTAGCTG 1060
Query 1079 TAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCG 1138
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1061 TATTGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGCTGTTGGATGCG 1120
Query 1139 GAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAA 1180
Query 1199 CACCGGGAACTCCTAGGACTCCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCACTTG 1258
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1181 CACCGGGAACTCCTAGGACACCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCTCTTG 1240
Query 1259 TTAATAATGATAAACTCGAAGGCAAAGTCTGATCTTCTTCATTCCGCAGCTCAGTTTAG- 1317
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1241 TTAATAATGATAAACTCGAAGGCAAAGTCTGATCTTATCCAATCCGCAGCTCAGTTTAGC 1300
Query 1318 --T-ACT--CACTGG-TTCAGGGTGCTGCAGAAGAGAAGCATTGACACAAGGGGTGTTGA 1371
| ||| |||||| || ||||| |||| ||||||||||||| ||||||| ||||||||
Sbjct 1301 ACTCACTGTCACTGGGTT-AGGGTACTGCGGAAGAGAAGCATTCACACAAGCGGTGTTGA 1359
Query 1372 ATTTTTACTAAATATGCATTTTACTCAAAAACCTTAGTAGAGAAAAGTTACAtttttttt 1431
||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1360 ATTTTTACTAAATATGCGTTTTACTAAAAAACCTTAATAGAGAAAAGTTACATTTTTTTT 1419
Query 1432 tttCGTTTTGATTTGAGCTCGTAGAAGAGATAATGGTTCCTACTACTATTTATATTTCTG 1491
|||||||||||||||| ||||||||||||||||||||||||||| | || |||| ||||
Sbjct 1420 TTTCGTTTTGATTTGATTTCGTAGAAGAGATAATGGTTCCTACTA-T-TT-ATATCTCTG 1476
Query 1492 TGAAGTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCCGAAGGAGAGAACTA 1551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1477 TGAAGTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCTGAAGGAGAGTACTA 1536
Query 1552 CTACATTTATTGCTTCTTCTTTTTTG 1577
||||||| ||||||||||||||||||
Sbjct 1537 CTACATTAATTGCTTCTTCTTTTTTG 1562
> Ahg313079 jgi|Araly1|313079|fgenesh1_pm.C_scaffold_1001859
Length=1026
Score = 1127 bits (610), Expect = 0.0
Identities = 880/1009 (87%), Gaps = 23/1009 (2%)
Strand=Plus/Plus
Query 292 AGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATC 351
||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| || |||
Sbjct 31 AGTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAATGTTACTGTTATC 90
Query 352 ATCATGAACAAATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGT 411
||||||||||||||||||||||||||||||||||| || |||||| | || |||||||||
Sbjct 91 ATCATGAACAAATGGATCTTTCAGAAACTGGATTTCAAATTTCCATTGTCAGTTTCATGT 150
Query 412 GTTCACTTCATATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTC-AAGCTTAA 470
||||| ||||||||||| ||||||||||||||||| || |||||||| || ||| ||||
Sbjct 151 GTTCATTTCATATGTTCATCGATTGGAGCTTACATTGTGATCAAAGT-CTTGAAGATTAA 209
Query 471 ACCATTGATTGTTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTC-TTTCG 529
||| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 210 ACCTTTGATTGTGGTTGATCCTGAAGATCGTTGGAGGAGGATTTTTCCAATGTCATTT-G 268
Query 530 TGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTA 589
| ||||||||||||||||| ||||| || |||||||| | |||||||| || || ||||
Sbjct 269 TCTTTTGTATCAACATTGTGTTGGGGAACATCAGTCTTAGATACATTCCTGTCTCTTTTA 328
Query 590 TGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGA 649
||||||| || || ||||| ||||| || || ||||| |||||||||||| |||||||||
Sbjct 329 TGCAGACTATCAAATCTTTTACTCCGGCAACAACAGTGGTGTTACAGTGGTTGGTATGGA 388
Query 650 GGAAATACTTTGACTGGCGTATTTGGGCGTC-TCTCGTGCCTATTGTTGGTGGAATTCTT 708
||||||| ||||| ||||||||||||||||| | | |||||||||||||| || ||||||
Sbjct 389 GGAAATATTTTGAATGGCGTATTTGGGCGTCGT-TGGTGCCTATTGTTGGAGGGATTCTT 447
Query 709 CTGACATCTGTGACTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGA 768
||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 448 CTGACTTCTATTACAGAACTTAGCTTTAATGTGTTTGGATTCTGTGCTGCTTTGTTTGGA 507
Query 769 TGTTTAGCTACTTCCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTT 828
||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 508 TGTTTAGCTACCTCTACAAAGACCATTCTTGCGGAATCTCTTCTTCATGGATACAAATTT 567
Query 829 GACAGCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGAT-ACC 887
|||||||||||||| || |||||||||||||||||||| |||||||||||||| || |||
Sbjct 568 GACAGCATAAACACGGTATACTATATGGCGCCTTTTGCGACCATGATTCTCGG-ATTACC 626
Query 888 AGCGTTAT-TACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCC-TGCTCCC 945
||| || | |||| ||||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 627 AGCATT-TCTACTTGAAGGCAATGGAATTTTGAATTGGTTTGAAGCACACCCGT-CTCCA 684
Query 946 TGGTCAGCCCTCATCATTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCC 1005
||||| || ||||||||||| |||| || ||||||||||| |||||||| |||||||||
Sbjct 685 TGGTCGGCTCTCATCATTATTTTCAGCTCGGGTGTTCTAGCTTTCTGTCTTAACTTCTCC 744
Query 1006 ATCTTCTATGTCATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAG 1065
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 745 ATCTTCTATGTCATTCACTCCACAACGGCAGTCACATTCAATGTAGCTGGAAACCTTAAG 804
Query 1066 GTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAAT 1125
|||||||| ||||| |||| |||||| |||||||| ||||| |||||| ||||||
Sbjct 805 GTTGCAGTAGCTGTGTTGGTATCATGGATGATATTCAAAAACCCGATATCACCGATGAAT 864
Query 1126 GCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATG 1185
||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| |||
Sbjct 865 GCTGTTGGATGCGGAATCACACTTGTGGGCTGCACCTTTTATGGTTATGTAAGGCACATG 924
Query 1186 CTTTCACAGCAAACA-CCGGGAACTCCTAGGACTCCTCGTACCCCAAG-AAGCAAGATGG 1243
||||| |||||| || || |||||||| ||||||||||||| |||||| || ||||||||
Sbjct 925 CTTTCTCAGCAA-CAACCAGGAACTCCCAGGACTCCTCGTAACCCAAGGAA-CAAGATGG 982
Query 1244 AATT-ACTTCCACTTGTTAATAATGATAAACTCGA-AGGCAAAGTCTGA 1290
|| | | |||| ||||||||| |||||||| || || ||||| |||
Sbjct 983 AACTGA-TTCCTCTTGTTAAT---GATAAACTAGAGAGT-AAAGTTTGA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5