BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77630.1
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708 2034 0.0
Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2 785 0.0
> Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708
Length=1278
Score = 2034 bits (1101), Expect = 0.0
Identities = 1221/1280 (95%), Gaps = 4/1280 (0%)
Strand=Plus/Plus
Query 270 ATGAAGAATCCAGAAAAACCCTTACTTCTGTTTCTAATTTTAGCTTCAAGCTTAGCATCA 329
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAACCCAGAAAAACCCTTATTTCTGTTTCTAATTTTAGCTTCAAGCTTAGCATCA 60
Query 330 ATGGCGACTGCAAAATCCACAATAGAGCCTTGCTCCAGTAAAGACACTTGTAACTCATTG 389
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 ATGGCGACTGCGAAATCCACAATAGAGCCTTGCTCCACTAAAGACACTTGTAACTCATTG 120
Query 390 CTAGGCTACACTCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTCTCTCTTCCAAGTA 449
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTAGGCTACACGCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTCTCTCTTCCAAGTA 180
Query 450 GACCCAGTTTCAATGCTTTTGTCTAACTCCATTGATATCTCTTACCCAGACGTCGAGAAC 509
|||||||| || |||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GACCCAGTCTCGATGCTTCTCTCTAACTCCATTGACATCTCTTACCCAGACGTCGAGAAC 240
Query 510 CATGTCCTTCCCGCTAAGCTCTTCCTCAAGATCCCAATCACTTGCTCCTGTGTCGACGGA 569
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CATGTCCTTCCCGCTAAGCTCTTCCTCAAAATCCCAATCACTTGCTCCTGTGTCGACGGA 300
Query 570 A-TCAGAAAATCCCTCTCGACTCATTACAAGACTCGTACTTCTGACACACTAGGATCGAT 628
| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 301 ATTC-GAAAATCCCTCTCGACCCATTACAAGACTCGTACTTCCGACACGCTAGGATCGAT 359
Query 629 TGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCAGGTCGCGAATTCAGA 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCAGGTCGCGAATTCGGA 419
Query 689 GACTGACCTTTCGGTTCTCGATGTAGGTACAAAGCTTGTGATTCCATTGCCTTGCGCTTG 748
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 AACTGACCTCTCGGTTCTCGATGTAGGTACAAGGCTTGTGATTCCATTGCCTTGCGCTTG 479
Query 749 CTTCAATGGTACCGATGAATCTCTTCCGGCGCTTTATCTATCTTACGTTGTGAGAGGAAT 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 CTTCAATGGTACCGATGAATCTCTTCCGGCGCTTTATCTATCTTACGTTGTGAGGGGAAT 539
Query 809 CGACACTATGGCTGGAATCGCAAAGAGATTCTCGACCTCTGTTACTGATTTAACAAACGT 868
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 540 CGACACAATGGCTGGAATCGCAAAGAGATTCTCGACCACTGTTACGGATTTAACAAATGT 599
Query 869 GAATGCTATGGGAGCTCCTGATATCAATCCTGGTGATATCCTCGCTGTCCCATTGCTAGC 928
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GAATGCGATGGGAGCTCCTGATATCAATCCTGGTGATATCCTCGCTGTCCCATTGCTTGC 659
Query 929 TTGTAGTTCAAATTTCCCCAAATACGCTACGGATTACGGATTAATCATTCCAAATGGAAG 988
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 TTGTAGTTCAAATTTCCCCAAATACGCTACGGATTACGGATTGATCATTCCAAACGGAAG 719
Query 989 CTATGCTCTCACTGCAGGCCACTGTGTACAATGCAGCTGTGTTCTCGGAAGCCGAAGTAT 1048
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CTATGCTCTCACCGCAGGCCACTGTGTACAATGCAGCTGTGTTCTCGGAAGCCGCAGTAT 779
Query 1049 GTATTGTGAGCCTGCTTCTATATCAGTCTCTTGTTCCAGTATGAGATGTAGAAACAGCAA 1108
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 780 GTATTGTGAGCCTGCTTCTTTAGCAGTCTCTTGTTCCAGTATGCGATGTAGAAACAGCAA 839
Query 1109 CTTCATGCTTGGTAACATTACTTCGCAGCAGAGTAGCTCCGGTTGTAAACTTACTACTTG 1168
||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CTTCATGCTCGGGAACATCACTTCGCAGCAGAGTAGCTCGGGTTGTAAACTTACTACTTG 899
Query 1169 TAGTTACAACGGTTTCGCTAGCGGCACTATCTTGACCACGTTGTCCATGTCTCTTCAACC 1228
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TAGTTACAACGGTTTCGCTAGCGGCACTATCTTGACCACGTTATCCATGTCTCTTCAACC 959
Query 1229 TCGATGCCCTGGACCGCAACAATTAGCACCGCTTATAGCCCCGCCTGATAATGTTCCAAA 1288
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TCGATGCCCTGGACCGCAACAATTAGCACCGCTTATAGCCCCGCCTGATACTGTTCCAAA 1019
Query 1289 GGAACTGATGTATCTACCTTCACCTTCACCTTCGCCATCACCAGAGTTTGATGATATTGC 1348
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 GGAACTGATGTATCTACCTTCACCTTCACCTTCGCCTTCACCAGAGTTTGATGATATTGT 1079
Query 1349 TGGTGGAGGATCATCTATAGCCGCAGTCCCCGCGGCTTCACCT-GGAGGAGCTACGGTTT 1407
||||||||||||||| |||||||||||||||||||||||||| || ||| | |||||||
Sbjct 1080 TGGTGGAGGATCATCCATAGCCGCAGTCCCCGCGGCTTCACCCAGG-GGACCCACGGTTT 1138
Query 1408 CTTCAAGCAATTCAATCCCGGGTAATCCAGCTAATGGTCCAGGCGGAAGTATTTCTATAG 1467
||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1139 CTTCAAGCAGTTCAATACCGGGCAATCCAGCTAATGGTCCAGGCGGGAGTATTTCTATAG 1198
Query 1468 CTTCTTGTCCATTGAGCTATTACTCATTCATTGCGTTACTCATCCCCATTGGTTCTTGCT 1527
||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 1199 CTTCTTGCCCATTGAGCTATTACTCATTCATTGCGTTTCTCATCTCCATTGCTTCTTGCT 1258
Query 1528 TTTTTGTTTTCTAAGTTTGA 1547
||||||||||| |||||||
Sbjct 1259 CTTTTGTTTTCTTAGTTTGA 1278
> Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2
Length=1495
Score = 785 bits (425), Expect = 0.0
Identities = 875/1085 (81%), Gaps = 59/1085 (5%)
Strand=Plus/Plus
Query 268 AAATGAAGAATCCAGAAAAA-CC--C-T-TACTTC-T-GT-T-TCTAATTTTAGCTTCAA 318
||||||| || ||||||||| || | | | |||| | || | ||||||| ||||||| |
Sbjct 124 AAATGAAAAACCCAGAAAAACCCATCTTCTTCTTCTTCGTCTCTCTAATTCTAGCTTCGA 183
Query 319 GCT-TAG-CATCAATGGCGACTGCAAAATCCACAATAGAGCCTTGCTCCAGTAAAGACAC 376
|| | | | || | || || || ||||| ||||| ||||||||||| || || |||||
Sbjct 184 -CTCTCGTCTTC-ACAGCTACAGCGAAATCAACAATCGAGCCTTGCTCAAGCAACGACAC 241
Query 377 TTGTAACTCATTGCTAGGCTACACTCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTC 436
||| ||||| || || |||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 242 TTGCAACTCTTTACTCGGCTACACGCTCTACACCGACCTCAAAGTCTCAGAAGTCGCATC 301
Query 437 TCTCTTCCAAGTAGACCCAGTTTCAATGCTTTT-GTCTAACTCCATTGATATCTCTTACC 495
||||||||||||||||||| | ||| | ||||| | ||||| |||| |||||||||||||
Sbjct 302 TCTCTTCCAAGTAGACCCAATCTCAGTCCTTTTAG-CTAACGCCATCGATATCTCTTACC 360
Query 496 CAGACGTCGAGAACCATGTCCTTCCCGCTAAGCTCTTCCTCAAGATCCCAATCACTTGCT 555
|||||||||| |||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 361 CAGACGTCGAAAACCATATCCTTCCTTCAAAGCTCTTCCTCAAAATCCCAATCACTTGCT 420
Query 556 CCTGTGTCGACGGAATCAGAAAATCCCTCTCGACTCATTACAAGACTCGTA-CTTCTGAC 614
|||| |||||||||||||| ||||| |||| || |||||||| || || | |||| |||
Sbjct 421 CCTGCGTCGACGGAATCAGGAAATCTGTCTCTACCCATTACAAAACCCG-ACCTTCCGAC 479
Query 615 ACA-CTAGGATCGATTGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCA 673
| | ||||||||||||||||||||||||||||| ||| |||||||| | |||||||| ||
Sbjct 480 A-ATCTAGGATCGATTGCTGACTCTGTTTACGGAGGTTTGGTCTCTGCTGAGCAGATCCA 538
Query 674 GGTCGCGAATTCAGAGACTGACCTTTCGGTT-CTCGATGTAGGTACAAAG-CTTGTGATT 731
|| || || || | || ||||| ||| || || ||||| || || | | ||||| ||
Sbjct 539 GGAAGCTAACTCGGTGAATGACCCGTCG-TTGCTTGATGTTGGGACGA-GTCTTGTTATC 596
Query 732 CCATTGCCTTGCGCTTGCTTCAATGGTACCGATGAATCTCTT--CCGGCGCTTTATCTAT 789
|| |||||||||||||| |||||||| ||||| ||| |||| |||||| ||||| | |
Sbjct 597 CCCTTGCCTTGCGCTTGTTTCAATGGCACCGAC-AAT-TCTTTGCCGGCGGTTTATTTGT 654
Query 790 CTTACGTTGTGAGAGGA-ATCGACACTAT-GG-CTGGAATCGCAAAGAGAT-TCTCGACC 845
| || || || || ||| || || || || || | ||||| || | ||| | | |||||
Sbjct 655 CGTATGTGGTTAG-GGAGATTGATAC-ATTGGTC-GGAATTGCGAGGAGGTAT-TCGAC- 709
Query 846 T-CTGTTACTGATTTAACAAACGTGAATGCTATGGGAGCTCCTGATATCAATCCTGGTGA 904
| || |||||||||| | || |||||||||||||||||||||||| | | | |||| ||
Sbjct 710 TACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGGAGA 769
Query 905 TATCCTCGCTGTCCCATTG-CTAGCTTGTAG-TTCAAATTTCCCCAAATACGC-TACGGA 961
||| |||||||| || ||| | ||| ||| | |||||| ||||||| ||| || | ||||
Sbjct 770 TATTCTCGCTGTTCCTTTGTC-AGCCTGT-GCTTCAAAGTTCCCCAGATATGCAT-CGGA 826
Query 962 TTACGGATTAATCATTCCAAATGGAAGCTATGCTCTCA-CTGCAGGCCACTGTGTACAAT 1020
|| |||||| || |||||||||| ||||| ||| | | ||||||| || ||||| ||||
Sbjct 827 TTTCGGATTGATTGTTCCAAATGGTAGCTACGCTTT-AGCTGCAGGTCATTGTGTGCAAT 885
Query 1021 GCAGCTGTGTTCTCGGAAGCCG-AAGTATGTATTGTGAGCCTGCTTCTATATCAGTCTCT 1079
||||||||| || || ||||| || | |||||||||||||||||||| || | ||||||
Sbjct 886 GCAGCTGTGCGCTTGGGAGCCGCAATT-TGTATTGTGAGCCTGCTTCTCTAGCCGTCTCT 944
Query 1080 TGTTCCAGTATG-AGATGTAGAAACAGCAACTTCATGCTTGGTAACATTACT-TCGCAGC 1137
||||| |||||| || ||||||||||||||| ||||||| |||||||| || | |||||
Sbjct 945 TGTTCAAGTATGCAG-TGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGT-GCAGC 1002
Query 1138 AGAGTAGCTCCGGTTGTAAACTTACTACTTGT-AGTTACAACGGT-TTCGCTAGCGGCAC 1195
|||||||| | || ||||| |||| || ||| | |||||| ||| || || | ||||||
Sbjct 1003 AGAGTAGCGCTGGCTGTAATGTTACAACCTGTGA-TTACAATGGTATT-GCCAACGGCAC 1060
Query 1196 TATCTTGACCACGTTGTCCATGTCTCTTCAACCTCGATG-CCCTGGACCGCAACAATTAG 1254
||||||||||| | || ||| |||||||||||| ||||| ||| ||||| |||||||| |
Sbjct 1061 TATCTTGACCATGCTGACCAGGTCTCTTCAACCCCGATGTCCC-GGACCTCAACAATTTG 1119
Query 1255 CACCGCTTATAGCCCCGCCTGATAATGTTCCAAAGGAACTGATGTAT-CTACCTTCACCT 1313
| |||||| |||| || || |||| |||||| ||||| | |||||| | ||| |||||
Sbjct 1120 CGCCGCTTCTAGCTCCACCGGATACTGTTCCTAAGGATGTAATGTATGC-ACCAGCACCT 1178
Query 1314 TCACC 1318
|||||
Sbjct 1179 TCACC 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5