BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77640.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476928 jgi|Araly1|476928|fgenesh2_kg.2__2058__AT1G77640.1 713 0.0
> Ahg476928 jgi|Araly1|476928|fgenesh2_kg.2__2058__AT1G77640.1
Length=877
Score = 713 bits (386), Expect = 0.0
Identities = 428/448 (96%), Gaps = 3/448 (1%)
Strand=Plus/Plus
Query 9 CCCAACACTTGTTCAAGCATATCTAAGTCAATAACAACATTACAACATAACATGGTGAAA 68
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1 CCCAACACTTGTTCAAGCATATCCAAGTCAATAACAACATCACCACATAACATGGTGAAA 60
Query 69 CAAGAACTCAAGATCCAAGTTACTActtcctcatcatcactctctcattcttcatcttct 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCT 120
Query 129 tcttcttcttcaACGTCGGCACTACGTCATCAATCTTGTAAGAACAAGATAAAGAAGTAT 188
|||||||| | |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCTTCG--A-CGTCGGGGCTACTTCATCAATCTTGTAAGAACAAGATAAAGAAGTAC 177
Query 189 AAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAA 248
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 AAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAACCAA 237
Query 249 AAGACAAGAATCTGGTTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGAC 308
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 AAGACAAGAATCTGGTTAGGTTCTTACTCTACCGCAGAAGCAGCTGCTAGGGCTTACGAT 297
Query 309 GCTGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAACATCACCACT 368
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCTGCTCTCTTGTGTCTCAAGGGACCTAAAGCTAATCTCAACTTCCCTAACATCACCACT 357
Query 369 ACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAA 428
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 358 ACTTCTCCTTTTCTTATGAACATCGATGAAAAGACCCTTTTGTCCCCCAAATCCATCCAA 417
Query 429 AAGGTCGCCGCTCAAGCCGCTAACTCCT 456
||||||||||||||||||||||||||||
Sbjct 418 AAGGTCGCCGCTCAAGCCGCTAACTCCT 445
Score = 562 bits (304), Expect = 2e-159
Identities = 399/442 (90%), Gaps = 17/442 (4%)
Strand=Plus/Plus
Query 496 ATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCAC 555
||| |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||| |
Sbjct 446 ATGTTCATGATGACGGACTCCATCGCCATCCATCTCCTTCTTCTTCAACTGCATCTTCTC 505
Query 556 CACCAGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTT 615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 506 CACCAGATGATGATCATCATAATGATGATGATGGTGATTTGGTATCGTTGATGGAATCTT 565
Query 616 TCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTG-TATGAATTTGGACAT 674
||||||| ||||| |||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 566 TCGTGGACTACAAGGAACACGTGTCTCTGATGGATCCATCA-TGGTATGAATTTGAACAT 624
Query 675 AATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCA 734
|||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 625 AATGAGATGTTATTCACCAACGGAGCTCCGTTTGATTATTCTCCACAGTTAAATAGCTC- 683
Query 735 GAGGCAACGATGGATGACTTCTACGACGATGTTGATATTCCGCTATGGAGTTTCAGTTAA 794
|| |||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 684 GA--------TGGATGACTTCTACGACGATGTTGATATTCGGCTATGGAGTTTTAGTTGA 735
Query 795 TCCAACGGTCCATATTATTATACTACGAAACACttttaattcacattatttcatttaatt 854
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 736 TCCAACGGTCAATATTATTATACTACGAAACACTTTCAATTCACATTATTTCATTTAATT 795
Query 855 tattctttcaa--tt--c-at-attattcGTCCTTGTTGTTTCGTTATGTATTAAATATA 908
|||||||| || || | || || ||||| | |||||||||| |||||||| |||||||
Sbjct 796 TATTCTTTTAAACTTATCGATTATCATTCGACGTTGTTGTTTCTTTATGTATGAAATATA 855
Query 909 CACACACTAATTTAAGAAGATC 930
||||||||||||||||||||||
Sbjct 856 CACACACTAATTTAAGAAGATC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5