BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77650.1 Length=1152 Score E Sequences producing significant alignments: (Bits) Value Ahg323833 jgi|Araly1|323833|fgenesh1_pm.C_scaffold_5001377 318 5e-86 > Ahg323833 jgi|Araly1|323833|fgenesh1_pm.C_scaffold_5001377 Length=1005 Score = 318 bits (172), Expect = 5e-86 Identities = 352/434 (81%), Gaps = 32/434 (7%) Strand=Plus/Plus Query 726 GATTGCTGATTCAGTTATCC-TTTCAAG-TTTCAGAGTAGATAGGCTTTCTTTGTTTCGT 783 ||||| ||| |||| || || |||| || |||||||| |||||||||||||||| || | Sbjct 597 GATTGATGACTCAG-TAGCCTTTTC-AGCTTTCAGAGGAGATAGGCTTTCTTTG-TT--T 651 Query 784 CAACAACGCCTTGAAGA-TAAAAAATATGAGATGGAGGTTTGGGTCACAAACAAGGTGAC 842 || |||| | ||| ||| ||| || ||||| ||||| |||||||| ||||||||||| Sbjct 652 CATCAACTCTTTGGAGACGAAACAA-GGGAGATTGAGGTGTGGGTCACGAACAAGGTGAC 710 Query 843 TGATGAGGTTGTCTCATGGACTAAGTATTTTAATGTGACTCACCACCCTGATCTCCCCAT 902 ||||| ||||||| ||| || |||||||||||||||| || | ||||||||||| || Sbjct 711 TGATGGGGTTGTCACATTGAGTAAGTATTTTAATGTGGCT---CGTCCTGATCTCCCTAT 767 Query 903 CTTAAATCCCTATCTCTTCACATACATGCGTGTTCCTACATTCTTCATCCACGAGACCAA 962 ||||||| || || || | ||||||||||| || |||||||||||| ||||||| Sbjct 768 CTTAAAT-CC--TC-ATT----T-TATGCGTGTTCCGACTTTCTTCATCCACAAGACCAA 818 Query 963 TTCTATCATGTTATGGTGCGATAAAGCTGCT-GGAAAGGGTTTTGCTTGTACGAGCTTTT 1021 |||||||||||||||||||||||||| || | ||| |||||| ||||||||| ||||| | Sbjct 819 TTCTATCATGTTATGGTGCGATAAAGTTG-TAGGAGAGGGTTATGCTTGTACCAGCTTGT 877 Query 1022 ACGAAATTGGTGATCAGGGTGAGGTCAAACATCAACTTGAGACAAGAAAACGTTTTAGAG 1081 ||||||||||| | ||||||| ||||| | ||| |||||||| || ||| |||||| | Sbjct 878 ACGAAATTGGT---CGGGGTGAGATCAAAAAACAAGTTGAGACAGGACAACCTTTTAGCG 934 Query 1082 CT-AACGGTGAACGTAACTC-TTGTGTT-TCCAGCTGTGTTTACGTTCCAAGTCTGGTTC 1138 | || | |||||||||| | || |||| | |||| ||||||||||||||||||||||| Sbjct 935 GTGAA-GATGAACGTAAC-CATTTTGTTATA-AGCTTTGTTTACGTTCCAAGTCTGGTTC 991 Query 1139 CCATTCCAGAGTAA 1152 | ||||||| ||| Sbjct 992 CGGTTCCAGAATAA 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42964527459 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5