BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77650.1

Length=1152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323833 jgi|Araly1|323833|fgenesh1_pm.C_scaffold_5001377           318    5e-86


> Ahg323833 jgi|Araly1|323833|fgenesh1_pm.C_scaffold_5001377
Length=1005

 Score =  318 bits (172),  Expect = 5e-86
 Identities = 352/434 (81%), Gaps = 32/434 (7%)
 Strand=Plus/Plus

Query  726   GATTGCTGATTCAGTTATCC-TTTCAAG-TTTCAGAGTAGATAGGCTTTCTTTGTTTCGT  783
             ||||| ||| |||| || || |||| || |||||||| |||||||||||||||| ||  |
Sbjct  597   GATTGATGACTCAG-TAGCCTTTTC-AGCTTTCAGAGGAGATAGGCTTTCTTTG-TT--T  651

Query  784   CAACAACGCCTTGAAGA-TAAAAAATATGAGATGGAGGTTTGGGTCACAAACAAGGTGAC  842
             || |||| | ||| |||  ||| ||   ||||| ||||| |||||||| |||||||||||
Sbjct  652   CATCAACTCTTTGGAGACGAAACAA-GGGAGATTGAGGTGTGGGTCACGAACAAGGTGAC  710

Query  843   TGATGAGGTTGTCTCATGGACTAAGTATTTTAATGTGACTCACCACCCTGATCTCCCCAT  902
             ||||| ||||||| ||| || |||||||||||||||| ||   |  ||||||||||| ||
Sbjct  711   TGATGGGGTTGTCACATTGAGTAAGTATTTTAATGTGGCT---CGTCCTGATCTCCCTAT  767

Query  903   CTTAAATCCCTATCTCTTCACATACATGCGTGTTCCTACATTCTTCATCCACGAGACCAA  962
             ||||||| ||  ||  ||    |  ||||||||||| || |||||||||||| |||||||
Sbjct  768   CTTAAAT-CC--TC-ATT----T-TATGCGTGTTCCGACTTTCTTCATCCACAAGACCAA  818

Query  963   TTCTATCATGTTATGGTGCGATAAAGCTGCT-GGAAAGGGTTTTGCTTGTACGAGCTTTT  1021
             |||||||||||||||||||||||||| || | ||| |||||| ||||||||| ||||| |
Sbjct  819   TTCTATCATGTTATGGTGCGATAAAGTTG-TAGGAGAGGGTTATGCTTGTACCAGCTTGT  877

Query  1022  ACGAAATTGGTGATCAGGGTGAGGTCAAACATCAACTTGAGACAAGAAAACGTTTTAGAG  1081
             |||||||||||   | ||||||| ||||| | ||| |||||||| || ||| |||||| |
Sbjct  878   ACGAAATTGGT---CGGGGTGAGATCAAAAAACAAGTTGAGACAGGACAACCTTTTAGCG  934

Query  1082  CT-AACGGTGAACGTAACTC-TTGTGTT-TCCAGCTGTGTTTACGTTCCAAGTCTGGTTC  1138
              | || | |||||||||| | || |||| |  |||| |||||||||||||||||||||||
Sbjct  935   GTGAA-GATGAACGTAAC-CATTTTGTTATA-AGCTTTGTTTACGTTCCAAGTCTGGTTC  991

Query  1139  CCATTCCAGAGTAA  1152
             |  ||||||| |||
Sbjct  992   CGGTTCCAGAATAA  1005



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42964527459


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5