BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77670.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339926 jgi|Araly1|339926|fgenesh1_pg.C_scaffold_2002025 1862 0.0
> Ahg339926 jgi|Araly1|339926|fgenesh1_pg.C_scaffold_2002025
Length=1203
Score = 1862 bits (1008), Expect = 0.0
Identities = 1139/1204 (95%), Gaps = 2/1204 (0%)
Strand=Plus/Plus
Query 195 ATGACCACAGTTTCGACTCAGAACGAGTCTACTCAAAAACCCGTCCAGGTGGCGAAGA-G 253
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| | |
Sbjct 1 ATGACCACATTTTCGACTCAGAACGAGTCAACTCAGAAACCCGTCCAGGTGGCGAA-ACG 59
Query 254 ATTAGAGAAGTTCAAGACTACTATTTTCACTCAAATGAGCATATTGGCAGTTAAACATGG 313
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 60 ATTAGAGAAGTTCAAGACTACGATTTTCACTCAAATGAGCATATTGGCTGTTAAACACGG 119
Query 314 AGCGATCAATTTAGGCCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGC 373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCGATCAATTTAGGTCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGC 179
Query 374 TGCGATCCAAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCATTCCTCA 433
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 TGCGATCCTAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCGTTCCTGA 239
Query 434 GCTCAACTCTGCTATAGCTGCGCGGTTTCGTGAAGATACGGGTCTTGTTGTTGATCCTGA 493
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GCTCAATTCTGCTATAGCTGCGCGGTTTCGTGAAGATACGGGTCTTGTTGTTGATCCGGA 299
Query 494 GAAAGAAGTTACTGTTACATCTGGTTGCACAGAAGCCATAGCTGCAGCTATGTTGGGTTT 553
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 300 GAAAGAAGTTACTGTTACGTCTGGCTGCACAGAAGCCATAGCTGCAGCTATGTTGGGATT 359
Query 554 AATAAACCCTGGTGATGAAGTCATTCTCTTTGCACCGTTTTATGATTCCTATGAAGCAAC 613
|||||||||||| || ||||||||||||||||| || || |||||||| |||||||| ||
Sbjct 360 AATAAACCCTGGCGACGAAGTCATTCTCTTTGCGCCATTCTATGATTCTTATGAAGCGAC 419
Query 614 ACTCTCTATGGCTGGTGCTAAAGTAAAAGGAATCACTTTACGTCCACCGGACTTCTCCAT 673
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 420 GCTCTCTATGGCTGGTGCTAAAATAAAAGGTATCACTTTACGTCCACCGGACTTCTCAAT 479
Query 674 CCCTTTGGAAGAGCTTAAAGCTGCGGTAACTAACAAGACTCGAGCCATCCTTATGAACAC 733
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 480 CCCTTTGGATGAGCTCAAAGCTGCGGTAACTAACAAGACCCGAGCCATCCTCATGAACAC 539
Query 734 TCCGCACAACCCGACCGGGAAGATGTTCACTAGGGAGGAGCTTGAAACCATTGCATCTCT 793
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 540 TCCGCACAACCCAACCGGGAAGATGTTCACGAGAGAGGAGCTTGAAACCATTGCATCTCT 599
Query 794 CTGCATTGAAAACGATGTGCTTGTGTTCTCGGATGAAGTATACGATAAGCTTGCGTTTGA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTGCATTGAAAACGATGTGCTTGTGTTCTCGGATGAAGTATACGATAAGCTTGCGTTTGA 659
Query 854 AATGGATCACATTTCTATAGCTTCTCTTCCCGGTATGTATGAAAGAACTGTGACCATGAA 913
||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 660 AATGGATCACATTTCCATAGCTTCCCTTCCCGGTATGTACGAAAGAACCGTGACCATGAA 719
Query 914 TTCCCTGGGAAAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCGCCGCC 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TTCCCTGGGAAAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCACCGCC 779
Query 974 TCATCTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACC 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATCTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACC 839
Query 1034 AGCACAATGGGCAGCCGTTGCAGCTCTCAAGGCACCAGAGTCTTACTTCAAAGAGCTGAA 1093
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AGCACAGTGGGCAGCCGTTGCAGCTCTCAAGGCTCCAGAGTCTTACTTCAAAGAGCTGAA 899
Query 1094 AAGAGATTACAATGTGAAAAAGGAGACTCTGGTTAAGGGTTTGAAGGAAGTCGGATTTAC 1153
|||||||||| | ||||||||||| |||||| ||||||||||| |||||||| ||||
Sbjct 900 AAGAGATTACGCGGCGAAAAAGGAGATTCTGGTGAAGGGTTTGAAAGAAGTCGGGTTTAA 959
Query 1154 AGTGTTCCCATCGAGCGGGACTTACTTTGTGGTTGCTGATCACACTCCATTTGGAATGGA 1213
||||||||| |||||||||||||||||||| ||| |||||||| ||||||||| ||||
Sbjct 960 AGTGTTCCCGTCGAGCGGGACTTACTTTGTAACTGCGGATCACACGCCATTTGGATTGGA 1019
Query 1214 GAACGATGTTGCTTTCTGTGAGTATCTTATTGAAGAAGTTGGGGTCGTTGCGATCCCAAC 1273
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 GAACGATGTCGCCTTCTGTGAGTATCTTATTGAAGAAGTTGGGGTCGTTGCGATCCCGAC 1079
Query 1274 GAGCGTCTTTTATCTGAATCCAGAAGAAGGGAAGAATTTGGTTAGGTTTGCGTTCTGTAA 1333
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 TAGTGTCTTTTATCTGAATCCAGAAGAAGGGAAGAAATTGGTTAGGTTTGCGTTCTGTAA 1139
Query 1334 AGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTTAAGAGAAAAGT 1393
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTAAAGAGAAAAGT 1199
Query 1394 CTGA 1397
||||
Sbjct 1200 CTGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5