BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77682.1
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316679 jgi|Araly1|316679|fgenesh1_pm.C_scaffold_2001712 427 3e-119
> Ahg316679 jgi|Araly1|316679|fgenesh1_pm.C_scaffold_2001712
Length=303
Score = 427 bits (231), Expect = 3e-119
Identities = 283/307 (92%), Gaps = 8/307 (3%)
Strand=Plus/Plus
Query 47 ATGGCAGCAAATGGACGAGTGATCATAATAGCAATGCTAATGGTGGCTATGGTAATGAAC 106
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCAAATGGAAGAGTGATCATAATAGCACTGCTAATGGTGGCTATGGTAATGAAC 60
Query 107 ATGACATGGTGTGTCAACAGCAAAGGCTTTGTTAACTTAGGAATTAGTCCTGAAGAACTA 166
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 ATGACATGGTGCGTCAACAGCAAAGGCTTTGTAAATTTAGGAATTAGTCCTGAAGAACTA 120
Query 167 CAGAGTTGCATCAAGACTTGTATTCCGGAACAATGCATGCCCGAGGCTAATAATCTGACC 226
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 CAGAGTTGCATCAAGGCTTGTATTCCAGAACAATGCATGCCCGAGGCTAATAATCTAACC 180
Query 227 GTGTGTGAGAAAGCATGTCACAAATATTGCAACCGACCTGCTATGTCGTTCAAGCCCAAC 286
|||||||||||||||||||||||||||||||||||||||||| | || ||| | ||
Sbjct 181 GTGTGTGAGAAAGCATGTCACAAATATTGCAACCGACCTGCT-T-TC----AAGTCTTAC 234
Query 287 TATGTCGTTCCT-GTAGATGGAAATGATGTTGGGTTTATAAAAGCTGCTTTTTGCAAGCT 345
|||||||||||| | |||| |||||| || ||||||||||| | ||||||||||||||||
Sbjct 235 TATGTCGTTCCTCG-AGATCGAAATGGTGGTGGGTTTATAAGATCTGCTTTTTGCAAGCT 293
Query 346 ATGGTGT 352
|||||||
Sbjct 294 ATGGTGT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19268572445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5