BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77690.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1 1469 0.0
Ahg918699 jgi|Araly1|918699|Al_scaffold_0705_1 931 0.0
Ahg932026 jgi|Araly1|932026|scaffold_400014.1 793 0.0
Ahg486953 jgi|Araly1|486953|fgenesh2_kg.6__87__AT5G01240.1 556 1e-157
> Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1
Length=1669
Score = 1469 bits (795), Expect = 0.0
Identities = 840/862 (97%), Gaps = 1/862 (0%)
Strand=Plus/Plus
Query 8 AGAGAAGAAGAGAAAAATGGCGGCAGAGAAAATAGAGACAGTGGTCGCAGGGAATTACTT 67
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAAGAAGATAAAAATGGCGGCAGAGAAAATAGAGACAGTGGTCGCAGGGAATTACTT 60
Query 68 AGAAATGGAGAGGGAAGAAGAAAACATAAGTGGTAACAAGAAATCTTCAACTAAAACAAA 127
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 61 GGAAATGGAGAGAGAAGAAGAAAACATAAGTGGTAACAATAAATCTTCAGCTAAAACAAA 120
Query 128 ACTCTCTAATTTCTTCTGGCATGGTGGTTCTGTCTACGATGCTTGGTTTAGTTGTGCTTC 187
||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTTCCAACTTCTTCTGGCATGGAGGTTCTGTCTACGATGCTTGGTTTAGTTGTGCTTC 180
Query 188 AAATCAGGTGGCACAAGTTCTGTTGACATTACCATACTCGTTCTCACAACTTGGGATGAT 247
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 181 AAATCAGGTGGCACAAGTTCTGTTGACATTACCGTACTCGTTCTCACAACTTGGGATGGT 240
Query 248 GTCGGGAATTTTGTTTCAACTCTTTTATGGATTAATGGGAAGTTGGACTGCTTATCTCAT 307
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 GTCGGGAATTTTGTTTCAACTCTTTTATGGACTAATGGGAAGTTGGACTGCTTATCTCAT 300
Query 308 TAGTGTTCTTTACGTTGAATATCGAACTCGTAAAGAACGAGAAAAATTCGATTTCCGTAA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGTGTTCTTTACGTTGAATATCGAACTCGTAAAGAACGAGAAAAATTCGATTTCCGTAA 360
Query 368 CCACGTTATTCAGTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCT 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCACGTTATTCAGTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCT 420
Query 428 TGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTG 487
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCCGTTATTCAGCTCATTGCTTG 480
Query 488 TGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACATATT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACATATT 540
Query 548 TGGGGCGTGCTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGGTC 607
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGGGCGTGTTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGGTC 600
Query 608 ATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCT 660
Query 668 TCATGGCCAGGCTGAGGATGTGAAACACTCTGGTCCAACCACAATGGTGCTTTACTTCAC 727
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 TCATGGCCAGGCTGAGGATGTGAAACACTCGGGTCCAACCACAATGGTGCTTTACTTCAC 720
Query 728 CGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATAATGCA 787
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 721 CGGAGCCACCAACATTCTCTATACCTTCGGTGGACACGCCGTCACAGTGGAGATAATGCA 780
Query 788 CGCTATGTGGAAACCGCAAAAGTTCAAGGCGATATATCTA-CTAGCGACCATATATGTAC 846
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 CGCGATGTGGAAACCACAAAAGTTCAAGGCGATATATCTAACTAGCGACCATATATGTAC 840
Query 847 TAACGCTAACGCTACCATCCGC 868
||||||||||||||||||||||
Sbjct 841 TAACGCTAACGCTACCATCCGC 862
Score = 1262 bits (683), Expect = 0.0
Identities = 769/809 (95%), Gaps = 12/809 (1%)
Strand=Plus/Plus
Query 900 CTACTAACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTGGTTTTAGAGATACCGCA 959
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 863 CTACTAACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGTCCGGTTTTAGAGATACCGCA 922
Query 960 GTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCGTCTACACCGTTATAT 1019
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 923 GTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCATCTACACCGTTATAT 982
Query 1020 TTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGCATGTTCAAAAGAGCCATG 1079
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TTTGTGTGGGAAAAATTGATAGGTGTGCATGAGACGAAGAGCATGTTCAAAAGAGCCATG 1042
Query 1080 GCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTTTTTCGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTTTTTCGGA 1102
Query 1140 CCAATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTCTACATCATCCCCGCA 1199
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1103 CCAATCAATTCCGCCGTCGGATCTCTCTTAGTTAGCTTCACTGTATACATCATCCCCGCA 1162
Query 1200 TTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAATGCGGTGGAGAGGCCA 1259
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1163 TTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAACGCGGTGGAGAGACCA 1222
Query 1260 CCGAGAGTGGTAGGAGGATGGATGGGGACTTACTGCATAAACATATTTGTGGTGGTTTGG 1319
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1223 CCGCGAGTGGTGGGAGGATGGATGGGGACTTATTGCATAAACATATTTGTGGTGGTTTGG 1282
Query 1320 GTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTCAACTTTGTTCGCCAG 1379
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1283 GTATTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGTATGGTCAACTTTGTTCGCCAG 1342
Query 1380 ATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCCTCACAAGCCATGATAT 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1343 ATCGACACTTTTGGTCTCTTTACTAAATGCTACCAATGCCCTCCTCACAAGCCATGATAT 1402
Query 1440 ACAAATTTGCCATTCAAGACCTTCTAGAAAGAGAGTTTCATATAAGGGGGTTTTGATTTC 1499
||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 1403 ACAAATTTGCCATTCAAGACCTTCTAGAAAGAGAGTTTCATCTGAGTGGGTTTTGTTTTC 1462
Query 1500 GAGATCTAATATATATAAGTTACTACATCCAAtttttttttAGTATTTATTAAAAATCAC 1559
|| |||||||| |||||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 1463 GAAATCTAATACATATAAGTTATTATATCCA-TTTTTT---AGTATTTATTAAAAATCAC 1518
Query 1560 ATCTCTTTGTAATTGTTTGACGACAATAATCTTTTACCTCGGGTTTGTTT-----AATTT 1614
||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||
Sbjct 1519 ATCTCTTTGTAATTGTTTGACGACAATAATCTTTTACTTCGTTTTTTTTTTTTTTAATTT 1578
Query 1615 GTTATGTTGAGTTATTTTTGGTAAATTGGGtttttttt---GTTCCTTAGTTAAGGTGTG 1671
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1579 GTTATGTTGAGTTGTTTTTGGTAAATTGGGTTTTTTTTTTTGTTCCTTAGTTAAGGTGTG 1638
Query 1672 ATGGCTATCTTAGGCCAACCCTATTATTA 1700
|||||||||||||||||||||||||||||
Sbjct 1639 ATGGCTATCTTAGGCCAACCCTATTATTA 1667
> Ahg918699 jgi|Araly1|918699|Al_scaffold_0705_1
Length=552
Score = 931 bits (504), Expect = 0.0
Identities = 536/552 (97%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 885 GCGTTTGGCGATAAGCTACTAACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTGGT 944
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 1 GCGTTTGGCGATAAGCTACTAACTCATTCCAATGCGCGCTCTCTTCTCCCTAAGTCCGGT 60
Query 945 TTTAGAGATACCGCAGTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCG 1004
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 61 TTTAGAGATACCGCAGTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCA 120
Query 1005 TCTACACCGTTATATTTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGCATG 1064
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTACACCGTTATATTTTGTGTGGGAAAAATTGATAGGTGTGCATGAGACGAAGAGCATG 180
Query 1065 TTCAAAAGAGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCAAAAGAGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATC 240
Query 1125 TTCCCCTTTTTCGGACCAATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTC 1184
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TTCCCCTTTTTCGGACCAATCAATTCCGCCGTCGGATCTCTCTTAGTTAGCTTCACTGTA 300
Query 1185 TACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAAT 1244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAAC 360
Query 1245 GCGGTGGAGAGGCCACCGAGAGTGGTAGGAGGATGGATGGGGACTTACTGCATAAACATA 1304
||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 GCGGTGGAGAGACCACCGCGAGTGGTGGGAGGATGGATGGGGACTTATTGCATAAACATA 420
Query 1305 TTTGTGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTC 1364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TTTGTGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGTATGGTC 480
Query 1365 AACTTTGTTCGCCAGATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCCT 1424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AACTTTGTTCGCCAGATCGACACTTTTGGTCTCTTTACTAAATGCTACCAATGCCCTCCT 540
Query 1425 CACAAGCCATGA 1436
||||||||||||
Sbjct 541 CACAAGCCATGA 552
> Ahg932026 jgi|Araly1|932026|scaffold_400014.1
Length=1492
Score = 793 bits (429), Expect = 0.0
Identities = 1068/1364 (78%), Gaps = 93/1364 (7%)
Strand=Plus/Plus
Query 108 AAATCTTCA-AC-T-AAAACAAAACTCTCT-A-ATTTCTTCTGGCATGGTGGTTCTGTC- 161
||| ||||| || | ||| | || |||||| | || | || ||||||||||| |||| |
Sbjct 90 AAAGCTTCAGACATCAAATCTAAGCTCTCTGACATGT-TT-TGGCATGGTGGCTCTG-CT 146
Query 162 TACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGTGGCACAAGTTCTGTTGACATTACCA 221
|| ||||||||||| || |||||||| ||||||||||||||||| ||||||||| | |||
Sbjct 147 TATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTGTTGACACTGCCA 206
Query 222 TACTCGTTCTCACAACTTGGGATGATGTC-GGGAATTTTGTTTCAACTCTTTTATGG-AT 279
|||||||||||||| || |||||| | || ||| ||| ||||||| ||||| ||||| |
Sbjct 207 TACTCGTTCTCACAGCTGGGGATGCTCTCAGGG-ATTCTGTTTCAGCTCTTCTATGGCA- 264
Query 280 TAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTCTTTACGTTGAATATC-GAACTCGT 338
| | || |||||||||||||| ||||| || ||||||| |||||||| | ||||| |
Sbjct 265 TCTTAGGTAGTTGGACTGCTTACCTCATCAGCATTCTTTATGTTGAATA-CAGAACTAG- 322
Query 339 AAA-GA-ACGAGA-AAAATTCGATTTCCGTAACCACGTTATTCAGTGGTTTGAGG-TGTT 394
||| || | |||| ||| || | ||| | ||||| || |||||||||||||||| | ||
Sbjct 323 AAAGGAGA-GAGAGAAAGTT-AACTTCAGAAACCATGTCATTCAGTGGTTTGAGGTTCTT 380
Query 395 AGATGGATTG-TTGGGGAAACATTGGAGGAACCTTGGATTGATC-TTTAACTGCACTTTT 452
||||||||| || ||||| ||||||||||| |||| || | | ||||||||||| ||
Sbjct 381 -GATGGATTGCTT-GGGAAGCATTGGAGGAATGTTGG-TTTAGCTTTTAACTGCACATTC 437
Query 453 CTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTGTGCTAGCAATATATATTATATTAAT 512
||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| || |||
Sbjct 438 CTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATAAAT 497
Query 513 GACAAAT-TGGACAAGAGGACATGGACATACATATTTGGGGCGTGCTGTGCAACAACTGT 571
|| ||| ||||||||||||||||||||||||||||||| || || |||||||| || ||
Sbjct 498 GA-TAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACAGT 556
Query 572 TTTTATTCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCT-ATGACCA 630
|| ||||||||||||||||| || || || ||||| || || |||||| | |||||||
Sbjct 557 CTTCATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTC-TTGATGACCA 615
Query 631 CTTACACTTCTTGGTATCTCACCATTG-CTTCACTCCTTCATGGCCAGGCT--GAGGATG 687
|||||||| ||||||| |||||||||| || || |||| ||||| |||| | |||| |
Sbjct 616 CTTACACTGCTTGGTACCTCACCATTGCCTCCA-TCCTCCATGGACAGG-TACAAGGA-G 672
Query 688 TGAAACACTCTGGTCCAACCACA-ATGGTGCTT-TACTTCACCGGAGCCACCAACATTCT 745
|||| || || || |||| || | |||| || |||||||| || ||||| ||||||||
Sbjct 673 TGAAGCATTCAGGACCAAGCA-AGCTGGT-TTTATACTTCACAGGGGCCACAAACATTCT 730
Query 746 CTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATAATGCACGCTATGTGGAAACCGCA 805
||||| || ||||| || || || || || ||||||||||| |||||||||||||||||
Sbjct 731 TTACACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCGCA 790
Query 806 AAAGTTCAAGGCGATATATCTAC-TAGCGACCA-TATATGTACTAACGCTAACGCTACCA 863
||||||||| | ||||| || | | || | || | || || || ||||||||||| ||
Sbjct 791 GAAGTTCAAGTCCATATACCT-CTTTGC-AACACTCTACGTGCTGACGCTAACGCTGCCT 848
Query 864 TCCGCGTCTGCGGTTTATTGGGCGTTTGGCGATAAGCTACTAA-CTCATTCCAATGCGCT 922
|| |||||||||||||||||||||||||| ||| ||| |||| | ||||| || || |
Sbjct 849 TCTGCGTCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAAC-CATTCAAACGCATT 907
Query 923 CT-CTCTTCTCCCTAAGACTGGTTTTA--GAGA-TACCGCAGT-GATCCTCATGCTCATT 977
| |||||||||| |||| | ||| | | || | ||||| | | || ||||||||
Sbjct 908 -TGCTCTTCTCCCAAAGAATC-TTT-ACCGTGACTTT-GCAGTTG-TGCTTATGCTCATC 962
Query 978 CATCAATTTATAACGTTCGGATTCGCGT-CTACACCGTTATATTTTGTGTGGGAGAAA-T 1035
||||| || || || || || || || | | || || | || ||||||| |||||| |
Sbjct 963 CATCAGTTCATTACCTTTGGTTTTGCTTGC-ACGCCACTCTACTTTGTGTTGGAGAAGCT 1021
Query 1036 TGATAGGTG-TGCATGAGA-C-GAAGAGCATGT-TCAAAAGAGCCATG--GCTAGA-TTA 1088
| ||||| | |||||||| | |||| ||||| | ||| |||| || || || ||
Sbjct 1022 T-ATAGG-GATGCATGAGTGCCGAAG--CATGTGT-AAACGAGC--TGCCGCGAGGCTT- 1073
Query 1089 CCCGTGGTTGTACCCATATGGTT-CTTAGCCATTATCTTCCCCTTT-TTCGGACCAATCA 1146
|| || ||| ||||||| ||||| ||| || || || || || ||| ||||| || || |
Sbjct 1074 CCTGTTGTTATACCCATTTGGTTTCTT-GCTATCATATTTCC-TTTCTTCGGTCCCATTA 1131
Query 1147 ATTCCGCGGTCGGATCTCT-CTTAGTTAGCTTCACTGTCTACATCATCCCCGCATTGGCT 1205
| || | || |||||||| || || ||||||||||||||||||||||| ||| | |||
Sbjct 1132 ACTCAACTGTTGGATCTCTACTC-GTCAGCTTCACTGTCTACATCATCCCTGCACTAGCT 1190
Query 1206 CATATGCTT-ACCTTT-GCTCCTGCTCCTTCAAGAGAGAATGCGGTGGAG-AGGCCACCG 1262
||||| ||| ||||| |||||| | || || | || ||||| |||||| || || |||
Sbjct 1191 CATAT-CTTCACCTTCCGCTCCTCCGCCG-CACGTGAAAATGCCGTGGAGCAGCCC-CCG 1247
Query 1263 AGAGTGG-TAGGA-GGATGGA-TGGGGACTTACTGCATAAACATATTTGTGGTGGTTTGG 1319
|| || ||||| || |||| ||||| ||| | ||| ||| || | || || |||
Sbjct 1248 AG-GTTTCTAGGACGG-TGGACTGGGG-CTTTCACCATCAACGCCTTCATAGTTGTGTGG 1304
Query 1320 GTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTCAACTTTGTTCGCCAG 1379
|| ||| | ||||| |||||||| || || ||||| |||||| |||| ||||||| |||
Sbjct 1305 GTGTTCATTGTTGGATTCGGGTTCGGTGGTTGGGCTAGTATGATCAATTTTGTTCACCAA 1364
Query 1380 ATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCC 1423
|| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1365 ATTGACACCTTTGGCCTCTTCACCAAATGCTACCAATGCCCTCC 1408
> Ahg486953 jgi|Araly1|486953|fgenesh2_kg.6__87__AT5G01240.1
Length=1767
Score = 556 bits (301), Expect = 1e-157
Identities = 994/1321 (75%), Gaps = 77/1321 (6%)
Strand=Plus/Plus
Query 138 TTCTTCTGGCATGGTGGTTCTGTC-TACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGT 196
||| |||||||||| || || | | | || || |||||||| ||||| |||||||| ||
Sbjct 238 TTCCTCTGGCATGGCGGGTCCG-CTTGGGACGCCTGGTTTAGCTGTGCATCAAATCAAGT 296
Query 197 GGCACAAGTTCTGTTGACATTACCATACTCGTTCTCACAACTTGGG-ATGATGTCGGGAA 255
||||||||| |||||||| | || || |||||||| | | ||||| ||| | || ||||
Sbjct 297 GGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGC-AGTTGGGAATGTTATCAGGAA 355
Query 256 TTTTGTTTCAACTCTTTTATGGATTAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTC 315
| ||| ||||| | || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 356 TATTGCTTCAAATATTCTATGGATTAATGGGATCTTGGACTGCTTATCTCATCAGTGTTC 415
Query 316 TTTACGTTGAATATCGAACTCGTA--AAG-AAC--GA-GAAAAATTCGATTTCCGTAACC 369
||||||| |||||||| | |||| || ||| || | ||| || ||| ||||
Sbjct 416 TTTACGTCGAATATCGTGCCCGTATGGAGAAACAAGAGGCCAAA-TC--CTTCAAAAACC 472
Query 370 ACGTTATTCAGTGGTTTGAGGTG-TTAGATGGATTGTTGGGGAAACATTGG-AGGAACCT 427
|||||||||| |||||||| ||| || ||||| || |||| | ||| | | | |
Sbjct 473 ACGTTATTCAATGGTTTGAAGTGCTT-GATGGGCTGCTGGGTCCGTACTGGAAAGCAGCG 531
Query 428 TGGATTGATC-TTTAACTGCACTTTTCTT-CTCTTTGGATCTGTTATTCAGCTCATTGCT 485
|| | | | ||||| ||||| ||||| | || ||||| || || ||||||||||||
Sbjct 532 GGGCTCG--CATTTAATTGCAC-CTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCT 588
Query 486 TGTGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACATA 545
|||||||||||||||||||| || || || | || ||||||||||||||||| || |||
Sbjct 589 TGTGCTAGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATA 648
Query 546 TTTGGGGCGTGCTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGG 605
||||| || || ||||| || || ||||| || || || ||||||||||| | ||||||
Sbjct 649 TTTGGTGCTTGTTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGG 708
Query 606 TCATTCCTCGGACTCG-CTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACT 664
|| |||||||| || | | |||||||| || || ||||||| |||||||| || || |
Sbjct 709 TCTTTCCTCGGCCTTGGC-ATGACCACCTATACCGCTTGGTACCTCACCATCGCCGCATT 767
Query 665 CCTTCATGGCCAGGCTGAGGATGTGAAACACTCTGGTCCAACCACAA-TGGTGCTT-TAC 722
|| ||||| ||||| |||| ||||| ||| || ||||| || | | | ||| || |||
Sbjct 768 TCTCCATGGTCAGGCGGAGGGTGTGACACATTCCGGTCCGACTA-AGCTTGTG-TTGTAC 825
Query 723 TTCACCGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATA 782
|||||||||||||||||||| ||||| ||||| || || |||||||| || ||||| |||
Sbjct 826 TTCACCGGAGCCACCAACATCCTCTATACCTTCGGCGGACACGCCGTGACTGTGGAAATA 885
Query 783 ATGCACGCTATGTGGAAACCGCAA--AAGTTCAAG-GCGATATATCT--ACTAGCGAC-C 836
||||| || ||||||||||| || ||||| ||| || || || || | | || || |
Sbjct 886 ATGCATGCGATGTGGAAACC--AAGGAAGTTTAAGAGC-ATCTA-CTTGA-TGGCAACTC 940
Query 837 ATATATGTACTA-ACGCTAACGCTACCATCCGCGTCTGCGGTTTATTGGGCGTTT-GGCG 894
| || || || || ||||||| || || || || || || || ||||| ||| ||||
Sbjct 941 -TGTACGT-CTTCACATTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGC-TTTCGGCG 997
Query 895 AT-AAGCTACT-AACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTG-GTTTTAGAG 951
| || || || ||| || || || || ||||||| |||||||| || | |||| | |
Sbjct 998 ACCAA-CTTCTCAAC-CACTCAAACGCTTTCTCTCTCCTCCCTAAAAC-GCGTTTCCGTG 1054
Query 952 ATACCGCAGTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCGTCTACAC 1011
| ||||| || |||||||||||||| ||||| |||||||||||||| || |||| |||||
Sbjct 1055 ACACCGCTGTTATCCTCATGCTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACAC 1114
Query 1012 CGTTATATTTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGC--ATGTTCAA 1069
| || || || || ||||| ||| ||| || |||| | ||||||||| |||| | |
Sbjct 1115 CATTGTACTTCGTATGGGAAAAAGCGATCGGAATGCACCACACGAAGAGCTTATGT-CTA 1173
Query 1070 AAGAGC-CATGGCT-AGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTC 1127
| |||| | ||| | || ||||| ||||| || || |||||||| || ||||| || ||
Sbjct 1174 A-GAGCGC-TGG-TGAGGTTACCAGTGGTGGTTCCGATATGGTTTTTGGCCATCATTTTT 1230
Query 1128 CCCTTTTTCGGACCAATCAATTCCGCGGTCGGATCTCT--CTTAGTTAGCTTCACTGTCT 1185
|| |||||||| ||||| || || || || ||| | || || |||||||||||| ||||
Sbjct 1231 CCGTTTTTCGGGCCAATAAACTCGGCAGTTGGAGC-CTTACT-AGTTAGCTTCACCGTCT 1288
Query 1186 ACATCATCCCCGCATTGGCTCATATGCTTACCTTT-GCTCCTGC-TCCTTCAAGA-GAGA 1242
|||| ||||| || || || || ||||| |||| || || || || | | | | ||
Sbjct 1289 ACATTATCCCTGCCTTAGCCCACATGCTCACCTACCGCACC-GCCTC-TGCCCGCCG-GA 1345
Query 1243 ATGCGGTGGAGAGGCCACCGAGAGTGGTAGG-AGGATGGATGGGGACTT-ACTGCA-TAA 1299
| |||| ||||| |||||| | | || ||| || | || || | | |||
Sbjct 1346 ACGCGGCGGAGAAACCACCGTTCTTTATCCCTAGC-TGGGCCGG-AGTTTAC-GTAATAA 1402
Query 1300 ACATATTTG-TGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGT 1358
|| ||| | ||||||||||| | || | |||||||||||||| |||||||| ||
Sbjct 1403 ACGC-TTTCATAGTGGTTTGGGTCCTAGTTCTCGGGTTCGGGTTTGGCGGATGGGCCAGC 1461
Query 1359 ATGGTCAACTTTGTTC-GCCAGATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATG 1417
||| |||||| | | | || || || ||||||||||||||| |||||||||| |||||
Sbjct 1462 ATGACCAACTTCAT-CAGGCAAATTGATACTTTTGGTCTCTTTGCCAAATGCTATCAATG 1520
Query 1418 C 1418
|
Sbjct 1521 C 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5