BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77700.1

Length=1071
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909394 jgi|Araly1|909394|Al_scaffold_0002_2475                   1168    0.0  
  Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1        67.6    2e-10
  Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469          58.4    1e-07
  Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1        54.7    1e-06


> Ahg909394 jgi|Araly1|909394|Al_scaffold_0002_2475
Length=777

 Score = 1168 bits (632),  Expect = 0.0
 Identities = 731/777 (94%), Gaps = 14/777 (2%)
 Strand=Plus/Plus

Query  137  AAGATGCCAATTCGTTTCGGTTTGTCACCAAGGATCTTGTTACTCTTTCTCACCATATTA  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  5    AAGATGCCAATTCGTTTCGGTTTGTCACCAAGGATCTTGTTACTCTTTCTCACGATGTTA  64

Query  197  TCAGGGTTTGGATAACGATTAGAACTCCTGTG----A---A-T-TACTCCACAGGAACAA  247
            ||   ||||||||| |||||||||||| ||||    |   | | || |||||||||||||
Sbjct  65   TC---GTTTGGATACCGATTAGAACTCGTGTGAATTATTTATTATATTCCACAGGAACAA  121

Query  248  AATGGTCAGAATCAGCTCGAGTATTCACGATCATAAACTCATGTGACCAAACGATCTGGC  307
            |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct  122  AATGGTCAGAATCAGCTCGAGTATTCACGATCATTAACTCATGTGATCAAAAGATCTGGC  181

Query  308  CGGCGATAACTCCAGGAGAAAACTTCAACGGAGGAGGATTCGAGCTCAAACCGGGCCAAT  367
            ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  182  CGGCGATAACTCCCGGAGAAAACTTCAACGGTGGAGGATTCGAGCTCAAACCGGGACAAT  241

Query  368  CCATCGTATTCCACGCACCAGTAGGCTGGTCAGGCAGAATTTGGGGACGAACCGGTTGTA  427
            ||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||| || |
Sbjct  242  CCATCGTATTCAACGCACCGGTAGGCTGGTCAGGCCGAATATGGGGACGAACCGGCTGCA  301

Query  428  AATTCGACTCAACCGGAACCGGAACATGCGAAACCGGTTCATGCGGATCAACTCTAAAAT  487
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  302  AATTCGACTCAACCGGAACCGGAACCTGCGAAACCGGTTCATGCGGGTCAACTCTAAAAT  361

Query  488  GTTCAGCCTCCGGAAAACCACCAGCTTCACTAGCTGAATTCACATTAGCCGCA-TTGGAT  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||
Sbjct  362  GTTCAGCCTCCGGAAAACCACCAGCTTCACTAGCTGAATTCACATTAGCC-AAGTTGGAT  420

Query  547  TTCTACGACGTGAGCCTCGTCGACGGATTCAATCTCCCGATGTCGGTGACTCCGATGAAC  606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTCTACGACGTGAGCCTCGTCGACGGATTCAATCTCCCGATGTCGGTGACTCCGATGAAC  480

Query  607  GGAAAAGGAAACTGCAGCGTCGCCGGTTGCGTAGCTGATTTGAGGCCACATTGTCCGCAG  666
            |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  481  GGAATAGGAAACTGCAGCGTCGCCGGCTGCGTAGCTGATTTGAGGCCACATTGTCCACAG  540

Query  667  GAGCTCGCAGTGAAATCAAACGGGAAAGTCATATCGTGTAGGAGTGCTTGTGATGTGTTT  726
            |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  541  GAGCTCGCCGTGAAATCAAACGGGAAAGTGATATCGTGTAGGAGTGCGTGTGATGTGTTT  600

Query  727  GATAGAGATGAGTATTGTTGTAGAGGAGTTTATGGGAACCCAGTTGTGTGTCAACCAACT  786
            |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct  601  GATAGAGATGAGTATTGTTGCAGAGGAGTTTATGGGAATCCAGTGGTGTGTCAACCAACT  660

Query  787  TATTACTCAAAGATCTTTAAACAAGCTTGTCCTACTGCTTATAGTTATGCTTATGATGAT  846
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  661  TATTACTCAAAGATCTTCAAGCAAGCTTGTCCTACTGCTTATAGTTATGCTTATGATGAT  720

Query  847  CCGACCAGTATTATGACTTGCACTGCCTCTGATTACGTCATTTCTTTCTGTTCCTCC  903
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  721  CCGACCAGTATTATGACTTGCACTGCCTCTGATTACGTCATCTCTTTCTGTTCCTCC  777


> Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1
Length=863

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 43/46 (93%), Gaps = 2/46 (4%)
 Strand=Plus/Plus

Query  535  GCC-GCATTGGATTTCTACGACGTGAGCCTCGTCGACGGATTCAAT  579
            ||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  395  GCCGGCA-TGGATTTCTACGACGTGAGCCTCGTCGACGGATACAAT  439


> Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469
Length=738

 Score = 58.4 bits (31),  Expect = 1e-07
 Identities = 36/38 (95%), Gaps = 2/38 (5%)
 Strand=Plus/Plus

Query  543  GGATTTCTACGACGTGAGCCTCGTCGACGGATT-CAAT  579
            |||||||||||||||||||||||||||||| || ||||
Sbjct  363  GGATTTCTACGACGTGAGCCTCGTCGACGG-TTACAAT  399


> Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1
Length=799

 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  544  GATTTCTACGACGTGAGCCTCGTCGACGG  572
            |||||||||||||||||||||||||||||
Sbjct  390  GATTTCTACGACGTGAGCCTCGTCGACGG  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39876571182


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5