BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77720.1
Length=2753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476935 jgi|Araly1|476935|fgenesh2_kg.2__2065__AT1G77720.1 3557 0.0
Ahg924580 jgi|Araly1|924580|scaffold_200141.1 206 9e-52
Ahg924579 jgi|Araly1|924579|scaffold_200140.1 121 4e-26
> Ahg476935 jgi|Araly1|476935|fgenesh2_kg.2__2065__AT1G77720.1
Length=2572
Score = 3557 bits (1926), Expect = 0.0
Identities = 2393/2602 (92%), Gaps = 97/2602 (4%)
Strand=Plus/Plus
Query 149 TGGTTTCTCGTTTCTGAAAATCTACGGTGTAGTAAGTCGGAGATGCAGTTGAGATTTAGC 208
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TGGTTTCTCGTTTCGGAAAATCTACGGTGTAGCAAGTCGGAGATGCAGTTGAGATTTAGC 60
Query 209 AATGGACAGGGAGGATAACCTTCCGGTTCAACCGGATAAACCTCCGAAGAGTCTGGTTCG 268
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATGGACAGGGAGGCTAACCTTCCGGTTCAACCGGATAAACCTCCGAAGAGTCTGGTTCG 120
Query 269 TCCCATTTTAAACCTGGAAACAACTTCGTCTTCTTCATCCTCTTCCTCCTCCTCACCGGA 328
|||||| |||||||||||||| ||||||||||| | | | | ||||||| | | || ||
Sbjct 121 TCCCATCTTAAACCTGGAAACTACTTCGTCTTC-T--T-C-C-TCCTCCT-CGC-CC-GA 171
Query 329 ACTTCTACGGCATTTGCAAGCCGCTTTCAAACGCCATCGCCCACTCAGTAAAATGCAGAC 388
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACTTCTACGGCACTTGCAAGCCGCTTTCAAACGCCATCGCCCACTCAGTAAAATGCAGAC 231
Query 389 GACCAGTATCGGGCCTCGACGAAGTGTTGCTCCACAAAGACAAGCTTCAAGAAATACACG 448
||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 232 GACCACTATCGGGCCTCGACGGAGTGTTGCTCCACAACGACAAGCTTCAAGAAATACACG 291
Query 449 ATTGGTTACAGCTGAAGGGCAGAGATCTCAGGATGTTGTTACGCTGAGTCAGAGTCTTGC 508
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 292 TTTGGTTACAGCTGAAGGGCAGAGATCTCAGGATGTTGTTACGCTCAGTCAGAGTCTTGC 351
Query 509 TGCCAATACTTTGACACAGGATACTACTAACAACTTAGCCATCACTTCTGTTGCTGGAGA 568
||| |||||||||||||||||||| | | ||||||||||| | |||||||||||||||
Sbjct 352 TGCTAATACTTTGACACAGGATAC-A--AGCAACTTAGCCA-C--TTCTGTTGCTGGAGA 405
Query 569 ATCT---GCG--T-C--CA-TTACGCAACCTACAGTTTCAG-AGC----A-T--T-T--- 607
|||| | | | | || |||||| |||| ||||||||| | | | | | |
Sbjct 406 ATCTATTGAGAATGCGTCAATTACGCCACCTTCAGTTTCAGGAACTGTTAATAATATGTT 465
Query 608 ----CA-A-T--C--C--ATCAGATAGACAGATGGATTTTGGAAAATCTGCTGTTACTAG 655
|| | | | | |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 466 TGGTCAGAATTTCAACCCATCAGACAGACAGATGGATTTTGGAAAATCTGCTGTTGCTAG 525
Query 656 TCTAGAAAGCAATCT-G-----G-AT----G--T--------CCAGAGAAAGTCCCAATC 694
||||| ||||||||| | | || | | ||||||||||| ||||||
Sbjct 526 TCTAGGAAGCAATCTTGATATTGGATCTCAGAATGAAAATGACCAGAGAAAGTTCCAATC 585
Query 695 TCTCATTGG---CAC----A--TCTCAAGATATGGAATGGGATGCAACAAATCAGGCTGA 745
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 586 TCTCATTGGTAGCACCCTCACATCTCAAGATATGGAATGGGATGCAACAAATCAGGCTGA 645
Query 746 AGCATCACATCTTGATGCTTGTATTGGATCAAAACATCAGAATCTCCCATCTGTTGATTC 805
|||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 646 AGCATCACATCTTGGTGCTTGTATCGGATCAAAACGTCAGAATCTCCAATCTGTTGATTC 705
Query 806 TGAGGTCAGTTTAAAATCTGAATACAAGGATTCATCTTCACTGGCAAAGATCCAGGGTCA 865
|||| ||||||| |||||||||||||||| |||||||||| ||||||||| ||| |||||
Sbjct 706 TGAGATCAGTTTGAAATCTGAATACAAGGTTTCATCTTCATTGGCAAAGAACCACGGTCA 765
Query 866 GCTGGGAGAATTTCCCAACTTCTTGAACCAACC-AAGAACTCGGTGTTCGGCTGTGGGGT 924
|||||| ||||||| |||||||||||||||||| || ||||| |||||| ||||||||||
Sbjct 766 GCTGGGTGAATTTCGCAACTTCTTGAACCAACCTAA-AACTCAGTGTTCTGCTGTGGGGT 824
Query 925 CATCATGGGCCACAACTACGCTAATCCATTCATCTTCAGCTCCTATGTTAAATGCTACTA 984
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 825 CATCATGTGCCACAACTACGCTAATCCATTCGTCTTCAGCTCCTATGCTAAATGCTACTA 884
Query 985 CCCATGTCTCTCGTTCTTATGTTGAAGCTGATTCGAATGCAAATCCTCATGCTGTTCAAA 1044
|||| || ||||||||||||| || |||||||||| ||||||||| |||||||||||||
Sbjct 885 CCCACGTTTCTCGTTCTTATGCAGAGGCTGATTCGAGTGCAAATCCCCATGCTGTTCAAA 944
Query 1045 GTCAAGGGAACTTGCCTTCTTGTTGTCCGTCTTCCAAGGTCAGCAACATACTACATCCCA 1104
|||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||
Sbjct 945 GTCAAGGGAACTTGCCTTCTTGTTATCCTTCTTCCAAGGACAGCAACATACTACATACCA 1004
Query 1105 ATAAGGATGCCACTGCGTCTGAGATGCCAGCTTCAACTAATGATCCAGAAGTAAGAGTCA 1164
||||||||||| || | || | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1005 ATAAGGATGCCCCTCCATCAGCGATACCAGCCTCAACTAATGATCCAGAAGTAAGAGTCA 1064
Query 1165 AAGAGACAGATACGTCCAAGCAGCAACAGAT-CACCACAGGACTTGAAGCTCCAGTGGGA 1223
|||||| ||||| |||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 1065 AAGAGAGAGATAAGTCCAAGCAGCAACAG-TGCACCACAGAACTTGAAGCTCCAGTGGGA 1123
Query 1224 TCTTCCATTTATGGGAGCGACGGACAAGCGAATGCTCGTCTGCCCGAGGAGTTGCATACC 1283
||||||| | ||||| | ||||||||||||||||||||||| || || ||||||| ||||
Sbjct 1124 TCTTCCAGTCATGGGGGTGACGGACAAGCGAATGCTCGTCTACCTGATGAGTTGCTTACC 1183
Query 1284 AGTGTTAGCTCACAGCCACAAAAATCAGATAAGCATGAAAAGGTTGCAAGTAGCAAAGGG 1343
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1184 AGTGTTAGCTCACAGCCACAGAAATCAGATAAGCAGGAAAAGGTTGCAAGTAGCAAAGGG 1243
Query 1344 CCATCAGCGCCTCGTAAAAGAAATTATGATCCAGACTTGTTCTTTAAAGTCAATGGGAAG 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CCATCAGCGCCTCGTAAAAGAAATTATGATCCAGACTTGTTCTTTAAAGTCAATGGGAAG 1303
Query 1404 CTGTATCAGAGGCTTGGCAAGATAGGAAGTGGAGGAAGCAGTGAAGTCCACAAGGTTATT 1463
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CTTTATCAGAGGCTTGGCAAGATAGGAAGTGGAGGAAGCAGTGAAGTCCACAAGGTTATT 1363
Query 1464 TCTTCAGATTGTACCATATATGCGCTAAAAAAGATCAAGCTCAAGGGTCGTGACTATGCT 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TCTTCAGATTGTACCATATATGCGCTAAAAAAGATCAAGCTCAAGGGTCGTGACTATGCT 1423
Query 1524 ACAGCATATGGATTTTGCCAGGAAATTGGATATCTaaaaaaaCTGAAAGGGAAAACCAAC 1583
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1424 ACAGCATATGGATTTTGCCAGGAAATTGGATATCTAAAGAAGCTGAAAGGGAAAACCAAC 1483
Query 1584 ATCATTCAGCTTATAGACTATGAGGTCACGGATAAGACTTTACTCCAGGAGGTTTTGAAT 1643
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 ATCATTCAGCTAATAGACTATGAGGTCACGGATAAGACTTTACTCCAGGAGGTTTTGAAT 1543
Query 1644 GGCACAATGAGTAACAAAGATGGAAGAGTTAAGGAAGATGGATTTATATATATGGTACTA 1703
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1544 GGCACAATGAGTAACAAAGATGGAAGAGTTAAGGACGATGGATTTATATATATGGTACTT 1603
Query 1704 GAATATGGAGAAATCGATCTGGCTCACATGTTATCCCAAAAATGGAGGGAAATCGAAGGA 1763
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1604 GAATATGGAGAAATCGATCTGGCACACATGTTATCCCAAAAATGGAGGGAAATTGAAGGA 1663
Query 1764 TCTGACCGGACAATTGATGAAAATTGGCTTCGGTTCTACTGGCAGCAAATACTTCAAGCT 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TCTGACCGGACAATTGATGAAAATTGGCTTCGGTTCTACTGGCAGCAAATACTTCAAGCT 1723
Query 1824 GTGAACACCATACATGAGGAGCGTATTGTGCACTCTGATTTGAAACCTGCAAATTTCCTT 1883
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1724 GTGAACACCATACATGAGGAGCGCATTGTGCACTCTGATTTGAAACCTGCAAATTTCCTT 1783
Query 1884 CTTGTTCGAGGCTTTCTAAAACTTATTGATTTTGGTATCGCTAAGGCCATCAATAGCGAC 1943
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1784 CTTGTTCGAGGCTTTCTAAAACTTATTGATTTTGGAATCGCTAAGGCCATCAATAGCGAT 1843
Query 1944 ACTACAAATATTCAACGAGATTCACAGGTGGGGACTTTGAGTTACATGTCACCAGAAGCA 2003
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1844 ACTACGAATATTCAACGAGATTCACAGGTGGGGACTTTAAGTTACATGTCACCAGAAGCA 1903
Query 2004 TTCATGTGTAACGAAAGCGACGAGAATGGGAACACTATAAAATGTGGAAGACCATCAGAT 2063
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1904 TTCATGTGTAACGAAAGCGACGAGAATGGAAACACTATAAAATGTGGAAGACCATCAGAT 1963
Query 2064 ATTTGGTCACTTGGTTGCATACTATACCAAATGGTATATGGAAGAACACCTTTTGCAGAT 2123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 ATTTGGTCACTTGGTTGCATACTATACCAAATGGTATATGGAAGAACACCTTTTGCAGAT 2023
Query 2124 TATAAGACCTTCTGGGCAAAGTTCAAAGTCATAACTGATCCAAACCACGAGATTACTTAC 2183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2024 TATAAGACCTTCTGGGCAAAGTTCAAAGTCATAACCGATCCAAACCACGAGATTACTTAC 2083
Query 2184 AATCAACTCTCAAACCCATGGCTTATCGACCTAATGAAGAAATGTCTAGCTTGGGACCGT 2243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 AATCAACTCTCAAACCCGTGGCTTATCGACCTAATGAAGAAATGTCTAGCTTGGGACCGT 2143
Query 2244 AACCAAAGATGGAGAATCCCTGAGCTTCTCCAACATCCTTTCCTTGCGCCACCCATCCCA 2303
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2144 AACCAAAGATGGAGAATCCCTGAGCTTCTCCAACATCCTTTCCTTGCTCCGCCCATCCCA 2203
Query 2304 CACGAGCCTCAAGTGAAAACCATTAAA-TTGTTCAGTCTCATAGCTGAATCTTGTGGTAG 2362
| |||||||||||| |||||||||||| || | ||||||||||||||||||||||| | |
Sbjct 2204 CCCGAGCCTCAAGTCAAAACCATTAAACTTCT-CAGTCTCATAGCTGAATCTTGTGTTGG 2262
Query 2363 TGATGACGATAAAGCAAATTCCATGATTTCTCAGCTTGAGCAACTGCTTTCAAATCCTGC 2422
||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 2263 TGATGACGATAAAGCCAATTCCATGATCTCTCAGCTTGAACAACTGCTTACAAATCCTGC 2322
Query 2423 TCCTCTTCCAAGAAATGATGTGTTAGATTCAAGAGATCAAAATCAGCAACTTCTCTCTCG 2482
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2323 TCCTCTTCCAAGAAATGATCACTTAGATTCAAGAGATCAAAATCAGCAACTTCTCTTTCG 2382
Query 2483 AGTTTCAGAACTTTGTATTCAACTCCAGGATCGGTTACAAGGTCTTGAAGGAGAAAATTA 2542
|||||||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 2383 GGTTTCAGAACTTTGTATTCAACTCAAGGATCGGTTATGAGGTCTTGAA--AG----T-A 2435
Query 2543 GTAAGCAGTGCTGATATGATTCTACGGCTTTTGGATCTTGTAAATTGGTATGTTAATTGT 2602
| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2436 --A-GCAGTACTGATCTGATTTTACGGCTTTTGAATCTTGTAAATTGGTATGTTAATTGT 2492
Query 2603 TAGATTTGGAAA-AACGACGTTTGCTTATAATGTCTTGTTTGATTTCTTGTATTGGAATG 2661
|||||| ||||| || ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2493 TAGATT-GGAAAGAA-GACGTTTGCTTATAATGTCCTGTTTGATTTCTTGTTTTGGAATG 2550
Query 2662 TATCATTTTGGGTGCTCGTCTT 2683
||||||||||||||||||||||
Sbjct 2551 TATCATTTTGGGTGCTCGTCTT 2572
> Ahg924580 jgi|Araly1|924580|scaffold_200141.1
Length=248
Score = 206 bits (111), Expect = 9e-52
Identities = 137/149 (92%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 749 ATCACATCTTGATGCTTGTATTGGATCAAAACATCAGAATCTCCCA-TCTGTTGATTCTG 807
||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 35 ATCACATCTTGGTGCTTGTATTGGATCAAAACGTCAGAATCT-CCAGTCTGTTGATTCTG 93
Query 808 AG-GTCAGTTTAAAATCTGAATACAAGGATTCATCTTCACTGGCAAAGATCCAGGGTCAG 866
|| | ||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 94 AGAG-CAGTTTAAAATCTGAATACAAAGTTTTATCTTCACTGGCAAAGATCCAGGGTCAG 152
Query 867 CTGGGAGAATTTCCCAACTTCTTGAACCA 895
||||||||||||| || |||||||||||
Sbjct 153 CTGGGAGAATTTCACATTTTCTTGAACCA 181
> Ahg924579 jgi|Araly1|924579|scaffold_200140.1
Length=262
Score = 121 bits (65), Expect = 4e-26
Identities = 71/74 (96%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 190 GATGCAGTTGAGATTTAGCAATGGACAGGGAGGATAACCTTCCGGTTCAACCGGATAAAC 249
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 GATGCAGTTGAGATTTAGCCATGGACAGGAAGGCTAACCTTCCGGTTCAACCGGATAAAC 60
Query 250 CTCCGAAGAGTCTG 263
||||||||||||||
Sbjct 61 CTCCGAAGAGTCTG 74
Score = 121 bits (65), Expect = 4e-26
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 418 CTCCACAAAGACAAGCTTCAAGAAATACACGATTGGTTACAGCTGAAGGGCAGAGATCTC 477
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 91 CTCCACAACGACAAGCTTCAAGAAATACACGTTTGGTTACAGCTGAAGGGCAGAGATCTC 150
Query 478 AGGATGTTGTT 488
|||||||||||
Sbjct 151 AGGATGTTGTT 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103872098115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5