BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77730.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476936 jgi|Araly1|476936|fgenesh2_kg.2__2066__AT1G77730.1 1133 0.0
> Ahg476936 jgi|Araly1|476936|fgenesh2_kg.2__2066__AT1G77730.1
Length=783
Score = 1133 bits (613), Expect = 0.0
Identities = 726/780 (93%), Gaps = 10/780 (1%)
Strand=Plus/Plus
Query 7 TCTCCACTCGCCGCAAAATCAAACCTAACCACGACTCGATCGGCTTCGTTAAACATTCCA 66
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||| | ||
Sbjct 10 TCTCCACTCGCCGCGAAATCTAACCTAACCACGACTCGATCCGCTTCGTTAAACCTCCCT 69
Query 67 CATTCGACACGTACCAATCACAACCACGATCTCCGGTATAGTCTTTCCGCTGGTCCTCGT 126
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 70 CATTCGACACGTACCAATCACAACCACGATCTCCGGTATAGTCACTCCGCTGGTCCTCGT 129
Query 127 ACGAACGAAGATCGACCAGCTTCTGGGAACGGCGTCGCCGGAATCCTCTATAAATGGGTA 186
|| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 130 ACAAACGAAGATCGACCACCGTCTGGGAACGGCGTCGCCGGAATCCTCTACAAATGGGTA 189
Query 187 AACTACGGCCAAGGATGGAAACGACGGTGGTTCGTACTCCAGGACGGTGTTTTGTCGTAT 246
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 190 AACTACGGCCAAGGATGGAAACGACGGTGGTTCGTTCTCCAGGACGGTGTTTTCTCGTAT 249
Query 247 TATAGAATCCATGGTCCCGATAAAATATCTCTCTCCGTTGAGATGGATCGGAGATCTAAA 306
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 250 TATAGAATCCATGGTCCCGATAAAATATCTCTCTCCGTTGAAATGGACCGGAGATCTAAA 309
Query 307 CTGATCGGCGGCGAATCTTTACGGTTTATTTGCCGACATAGCAAACGCGGTGATGTTCAT 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TTGATCGGCGGCGAATCTTTACGGTTTATTTGCCGACATAGCAAACGCGGTGATGTTCAT 369
Query 367 AGCCCCGGGAAACCTCTCGGCCAAATTCACCTCAAGGTTTCATCGATTGGACAAAGCATA 426
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 370 AGCCCCGGGAAACCTCTCGGCCAAATTCACCTCAAGGTCTCATCGATTGGACAAAGCATA 429
Query 427 TCAGATGGCAAGAGATTCACTGTATTCACGGGCACGAAGAGTCTGCATTTACGAGCAGCA 486
||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 430 TCAGACGGGAAGAGATTTACAGTATTCACTGGCACGAAGAGTCTGCATTTACGCGCAGCA 489
Query 487 ACGAGCGAGGATCGTGCCTCTTGGATCGAAGCATTGAAAGCTGTTAAAGAAACGTTTCCA 546
||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 490 ACGAGCGAGGATCGTATCGCTTGGATCGAAGCTTTGAAAGCTGTTAAAGACACGTTTCCT 549
Query 547 AGAATGTCAAACGAAGAACTAATGGCATCGACGACTAATGTCTCAGTCTCGACCGATAAG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AGAATGTCAAACGAAGAACTAATGGCATCGACGACTAATGTCTCAGTCTCGACCGATAAG 609
Query 607 CTAAGGCAGAGATTAATGGAAGAAGAGGT-AGATGAGACAATCATCAAAGATTGCGAAGA 665
||||| |||||||||||| |||||||||| | ||||||||| ||||||||||||||||||
Sbjct 610 CTAAGACAGAGATTAATGAAAGAAGAGGTTA-ATGAGACAACCATCAAAGATTGCGAAGA 668
Query 666 CATAATGAAGAACAATTTC-TTAGCA-TTGCATGATGAGGTTATGTCT-CTAAAACGGTA 722
||||||||||||||||||| || || ||||||||||||||||||| | || |||| |||
Sbjct 669 CATAATGAAGAACAATTTCGTT--CAATTGCATGATGAGGTTATGT-TGCTCAAACAGTA 725
Query 723 CCAATATCATCTTATAGATTCTCTCAAGAACGTCAGTAACTCACCTATAAGACCCAGTAA 782
|||| ||||||| ||||||||||||| ||||| | | | |||| | ||||||||| |||
Sbjct 726 CCAACATCATCTCGTAGATTCTCTCAACAACGTTAATGAGTCAC-T-TAAGACCCACTAA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5