BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77750.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476938 jgi|Araly1|476938|fgenesh2_kg.2__2068__AT1G77750.1 1024 0.0
Ahg952576 jgi|Araly1|952576|scaffold_8900005.1 364 4e-100
> Ahg476938 jgi|Araly1|476938|fgenesh2_kg.2__2068__AT1G77750.1
Length=671
Score = 1024 bits (554), Expect = 0.0
Identities = 648/690 (94%), Gaps = 19/690 (3%)
Strand=Plus/Plus
Query 1 TTCACCGTCAAATCTCTGAAACTGAGCTTCGACGATGTTGGGTTTACGAAGATCTGCGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCACCGTCAAATCTCTGAAACTGAGCTTCGACGATGTTGGGTTTACGAAGATCTGCGAC 60
Query 61 GACCTTGTTCGACATCAGCCAGTCTCTGCTTCGTAATGTTACGTTTCATGGGTTACGAGT 120
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GACCTTGTTCGATATCAGCCAATCTCTGCTTCGTAATGTTACGTTTCATGGCTTACGAGT 120
Query 121 CCAAGGAATTCGTGTGGGAAACGCAGAGGTTCCAAACAATAAGCCACTCAAAACCGGTCT 180
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CCAAGGAATTCGTGTGGGGAACGCAGAGGTTCCAAACAATATGCCACTCAAAACCGGTCT 180
Query 181 TCAAGAAGTTTATGGAATCGGCCGCCGTAAATCTCACCAGGTTCTCTGTCACCTTGGAAT 240
||||| ||||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 TCAAGCAGTTTATGGGATTGGCCGCCGTAAGTCTCACCAGGTTCTCTGTCATCTTGGAAT 240
Query 241 CACTAACAAACTTGCCAGAGACTTAACTGGAAAAGAACTCATTGATCTCCGTGAAGAAGT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CACTAACAAACTTGCCAGAGACTTAACTGGAAAAGAACTCATTGACCTCCGTGAAGAAGT 300
Query 301 TGGCCAGCACCAGCATGGTGATGAACTGAGGAGGCGTGTTGGATCGGAAATACAGAGACT 360
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 301 TGGCCAGCACCAGCATGGTGATGAATTGAGGAGGCGTGTTGGATCAGAAATACAGAGACT 360
Query 361 GGTCGAAGTAGATTGCTACAGAGGTAGTAGACATAGACATGGATTGCCTTGCAGAGGACA 420
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GGTCGAAGTAGACTGCTACAGAGGTAGTAGACATAGACATGGAATGCCTTGCAGAGGACA 420
Query 421 AAGAACCAGTACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCAGGAAAGAA 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAACCAAAACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCAGGAAAGAA 480
Query 481 GAAAGCCCCTCGCAAGTAAACCTGTCTTTCTATCTATTCTCTGGGATTCATAAGTTGTAA 540
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 481 GAAAGCTCCTCGCAAGTAAACCTGTCTTTCAATCTATTTTCTGGGATTCATAAGTTGTAA 540
Query 541 TCCATGTCTTATTGTTTACAGACATGGCTTTGTGTTATTTTTGGGATGAAACTGATCAAA 600
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TCCATGTCTCATTGTTTACAGACATGGCTTTGTGTTACTTTTGGGATGAAACTGATCAAA 600
Query 601 TAAGTAAAACATGATTTGTCCAGTCtttttttGTCATTGCCATTGCCATTGCCATTGCAG 660
||||||||| | | | | |||||| ||||||| |||||||||||| | | |
Sbjct 601 TAAGTAAAA---G-T----C---T-TTTTTT-GTCATTGTCATTGCCATTGC-A--G--G 642
Query 661 AGGAAGAAGAATGCTTCAAAACTGTTCTGC 690
|||||||||||||||||||||||||||||
Sbjct 643 -GGAAGAAGAATGCTTCAAAACTGTTCTGC 671
> Ahg952576 jgi|Araly1|952576|scaffold_8900005.1
Length=226
Score = 364 bits (197), Expect = 4e-100
Identities = 218/228 (96%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 293 GAAGAAGTTGGCCAGCACCAGCATGGTGATGAACTGAGGAGGCGTGTTGGATCGGAAATA 352
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 GAAGAAGTTGGCCAGCACCAGCATGGTGATGAA-T-TGGAGGCGTGTTGGATCGGAAATA 58
Query 353 CAGAGACTGGTCGAAGTAGATTGCTACAGAGGTAGTAGACATAGACATGGATTGCCTTGC 412
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 59 CAGAGACTGGTCGAAGTAGACTGCTACAGAGGTAGTAGACATAGACATGGAATGCCTTGC 118
Query 413 AGAGGACAAAGAACCAGTACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCA 472
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAGGACAAAGAACCAAAACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCA 178
Query 473 GGAAAGAAGAAAGCCCCTCGCAAGTAAACCTGTCTTTCTATCTATTCT 520
|||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 179 GGAAAGAAGAAAGCTCCTCGCAAGTAAACCTGTCTTTCAATCCATTCT 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5