BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77760.1
Length=3034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927178 jgi|Araly1|927178|scaffold_202739.1 4364 0.0
> Ahg927178 jgi|Araly1|927178|scaffold_202739.1
Length=2803
Score = 4364 bits (2363), Expect = 0.0
Identities = 2666/2811 (95%), Gaps = 25/2811 (1%)
Strand=Plus/Plus
Query 59 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTAT------C-C- 110
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTATCCCCGCCTCA 60
Query 111 -CA---CCATGAACGGCGTCGCTCACGCCTTCAAACCTCCTCTCGTTCCTTCTCCTCGCT 166
|| ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct 61 ACACCGCCATGAACGGCGTCGTTCACGCTTTCAAACCTCCTCTCGTTCCTTCTCCCCGCT 120
Query 167 CATTCGACCGCCACCGTCACCAAAACCAAACTCTCGACGTCATCCTCACCGAAACTAAAA 226
|||||||||||||||||||||||||||| ||||||||| || |||||| || ||||
Sbjct 121 CATTCGACCGCCACCGTCACCAAAACCAGTCTCTCGACG---TCGTCACCG-AA--AAAA 174
Query 227 TCGTCAAAGAAACCGAAGTCAT---CACCACCGTCGTAGACAGTTACGACGACTCCTCAA 283
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
Sbjct 175 TCGTCAAAGAAACCGAAGTCATCACCACCACCGTCGCAGACAGTTACGACGACTCTTCCA 234
Query 284 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCTTACTACAAAGAGCTGGTTAAAA 343
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 235 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCATACTACAAAGAGCTGGTTAAAA 294
Query 344 AATCAAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACGGCTGATA 403
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 295 AATCCAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACTGCTGATA 354
Query 404 GTTGGATTCAACGTAACTCATCCATGCTCCGTCTCACCGGAAAACATCCATTCAACGCCG 463
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 355 GTTGGATCCAACGTAACTCCTCCATGATCCGTCTCACCGGAAAACATCCATTCAACGCCG 414
Query 464 AAGCACCTCTTCCTCGTCTTATGCACCATGGATTCATCACTCCAGTTCCACTCCATTACG 523
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 415 AAGCACCTCTCCCTCGTCTTATGCACCATGGATTCATCACTCCAGTCCCACTCCATTACG 474
Query 524 TCCGCAACCACGGTGCAGTTCCCAAAGCGAATTGGTCAGACTGGTCAATCGAAATTACCG 583
||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 475 TCCGCAACCACGGCGCAGTTCCCAAAGCGAATTGGTCCGATTGGTCAATCGAAATCACCG 534
Query 584 GACTCGTTAAACGTCCGGCTAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 643
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GACTCGTCAAACGTCCGGCGAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 594
Query 644 GCGAATTCCCGGTGACACTCGTCTGCGCCGGTAATCGCCGCAAGGAACAGAACATGGTGA 703
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 595 GCGAATTCCCGGTAACACTCGTCTGCGCCGGTAACCGCCGCAAGGAACAGAACATGGTGA 654
Query 704 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGTATCTACTTCTCTATGGAAAGGTA 763
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 655 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGCATCAACTTCTCTCTGGAAAGGTG 714
Query 764 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGAGGCGCGTTAA 823
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGCGGCGCGTTAA 774
Query 824 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCTAAATACGGAACAA 883
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 775 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCGAAATACGGAACAA 834
Query 884 GTATTAAGAAGGAGATGGCGATGGATCCGGCTAGAGATATTATCTTAGCTTATATGCAAA 943
|||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 835 GTATTAAGAAAGAGATGGCTATGGATCCTGCTAGAGATATTATATTAGCTTATATGCAAA 894
Query 944 ACGGCGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCGGGTTTCA 1003
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 895 ACGGTGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCCGGTTTTA 954
Query 1004 TCGGTGGTCGGATGGTTAAATGGTTAAAGAGAATCATCGTCACGCCTCAAGAATCTGACA 1063
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 TCGGTGGCCGGATGGTTAAATGGTTAAAGCGAATCATCGTCACGCCTCAAGAATCTGACA 1014
Query 1064 GTTACTATCACTATAAAGACAATCGAGTCCTTCCTTCTCTCGTTGATGCTGAGCTGGCAA 1123
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 ATTACTATCACTACAAAGACAATCGAGTCCTTCCTTCTCTTGTTGATGCTGAGCTGGCAA 1074
Query 1124 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATATAAACTCGG 1183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATGTAAACTCGG 1134
Query 1184 TGATTACAACACCTGGTCACGCAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TGATTACAACACCTGGTCACGAAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1194
Query 1244 CGTACACATTAAAAGGCTACGCTTATTCTGGAGGAGGTAAGAAGGTAACGAGGGTTGAGG 1303
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1195 CGTACACATTAAAAGGCTACGCTTACTCTGGAGGAGGTAAGAAGGTAACGAGAGTTGAGG 1254
Query 1304 TGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGA 1363
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 TGACTCTAGATGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAAGAGAAACCGA 1314
Query 1364 ACAAGTACGGTAAATTCTGGTGCTGGTGTTTCTGGTCACTTGACGTTGAGGTTCTTGATC 1423
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1315 ACAAGTACGGCAAGTTCTGGTGCTGGTGTTTCTGGTCACTAGACGTTGAGGTTCTTGATC 1374
Query 1424 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTCAATACTCAGCCTG 1483
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1375 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTGAACACCCAGCCTG 1434
Query 1484 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGGACCA 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1435 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGAACCA 1494
Query 1544 ACGTGTGCAAGCCTCATAGAGGAGAGATAGGGATAGTTTTCGAACACCCGACCAGACCCG 1603
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1495 ACGTGTGCAAGCCTAATAGAGGAGAGATAGGGATAGTTTTCGAACATCCGACCCGACCCG 1554
Query 1604 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAGCGTCAGCTTGAGATTTCCTCAGAATCCA 1663
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1555 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAACGTCAGCTTGAGATTTCCTCTGAATCCA 1614
Query 1664 A-CAATACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCGAAGATGTAT 1722
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1615 ACCAA-ACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCAAAGATGTAT 1673
Query 1723 TCAATCTCTGAAGTTAGAAAACACAACACTGCTGACTCTGCATGGATCATCGTCCACGGT 1782
||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1674 TCAATGTCCGAAGTTAGAAAACACAACTCTGCTGACTCTGCATGGATCATCGTCCACGGT 1733
Query 1783 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTG 1842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTC 1793
Query 1843 ATAAACGCAGGTACAGATTGCACCGAAGAGTTTGAAGCCATTCACTCTGACAAAGCCAAG 1902
|| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1794 ATTAACGCAGGAACAGATTGCACCGAAGAGTTTGAAGCTATTCATTCTGACAAAGCCAAG 1853
Query 1903 AAGCTTTTGGAAGATTACCGTATCGGTGAACTCATCACCACTGGCTACGACTCTTCCCCT 1962
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1854 AAGCTTTTAGAAGATTACCGTATCGGTGAACTCATCACTACTGGCTACGACTCTTCCCCT 1913
Query 1963 AACGTCTCAGTTCATGGTGCCTCAAACTTTGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 2022
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1914 AACGTCTCAGTCCATGGTGCCTCAAACTTAGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 1973
Query 2023 ACTCCTCAAAAGAACATTGCTTTGGTCAACCCACGTGAGAAAATCCCGGTTAGGCTCATT 2082
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1974 GCTCCTCAAAAGAACATTGCTTTGGTTAACCCACGTGAGAAAATCCCGGTTAGACTCATC 2033
Query 2083 GAGAAGACTTCGATCTCGCACGACGTTCGTAAGTTCCGATTCGCATTACCA-TCAGAAGA 2141
||||||||||||||||| ||||||||||||| |||| ||||||||||||| | ||||||
Sbjct 2034 GAGAAGACTTCGATCTCTCACGACGTTCGTAGGTTCAGATTCGCATTACCGGT-AGAAGA 2092
Query 2142 TCAACAGCTTGGTTTACCCGTGGGGAAGCACGTTTTCGTTTGCGCCAACATAAACGACAA 2201
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 2093 TCAACAGCTTGGTTTACCTGTGGGGAAGCACGTTTTCGTCTGCGCCAATATAAACGACAA 2152
Query 2202 ACTCTGTCTCAGAGCTTATACTCCCACCAGCGCCATCGACGCGGTTGGTCATATCGACCT 2261
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 2153 ACTCTGTCTCAGAGCTTATACTCCAACTAGCGCCATCGACGCCATTGGTCATATCGACCT 2212
Query 2262 CGTCGTCAAAGTTTACTTCAAAGACGTTCATCCAAGGTTTCCCAATGGTGGACTCATGTC 2321
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2213 AGTCGTCAAAGTTTACTTCAAAGACGTCCATCCAAGGTTTCCCAATGGAGGACTCATGTC 2272
Query 2322 TCAACACTTAGACTCGTTACCAATCGGGTCAATGATAGATATCAAAGGTCCACTAGGGCA 2381
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 2273 ACAACACTTAGACTCGTTACCAATCGGGTCAATGATAGACATCAAAGGTCCATTAGGACA 2332
Query 2382 CATCGAGTACAAAGGCAAAGGCAACTTCCTGGTCAGCGGCAAACCTAAGTTTGCCAAGAA 2441
||||||||||||||| | |||||||||| |||||||||||||||| |||||||| |||||
Sbjct 2333 CATCGAGTACAAAGGTAGAGGCAACTTCTTGGTCAGCGGCAAACCCAAGTTTGCTAAGAA 2392
Query 2442 ACTAGCAATGCTCGCCGGAGGAACAGGCATCACTCCTATCTACCAGATCATTCAATCTAT 2501
|||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2393 ACTAGCCATGCTCGCCGGAGGAACAGGCATTACTCCGATATACCAGATCATTCAATCTAT 2452
Query 2502 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2512
Query 2562 TGACATTCTTGTGAGGGAAGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2621
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 TGACATACTCGTGAGGGAGGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2572
Query 2622 GATTTGGTACGTCGTTGAAATCGCAAAGGAAGGTTGGAGTTACAGTACCGGGTTTATAAC 2681
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 2573 GATTTGGTACGTCGTTGAAATCGCAAAAGAAGGTTGGAACTACAGTACCGGGTTTATTAC 2632
Query 2682 TGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCGCTAGCACTCGC 2741
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2633 CGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCCCTCGCACTCGC 2692
Query 2742 ATGCGGACCACCGCCTATGATTCAGTTTGCGTTGCAGCCAAATCTAGAGAAGATGGGTTA 2801
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2693 ATGCGGACCACCGCCTATGATTCAGTTCGCGTTGCAGCCGAATCTAGAGAAGATGGGTTA 2752
Query 2802 CAACGTGAAGGAGGATCTCTTAATCTTCTAGATTTGCTCAAGTTCTGTGCT 2852
||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 2753 CAACGTGAAGGAGGATCTCTTGATCTTCTAGATTTGCTCAAGTTATATGCT 2803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114575456960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5